RadishBase

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Alignment for radish unigene UN16949

               1      -     51
UN16949        --> ACTATATGGAAGGCCGCGAGTAATAAGAGATTGTGATGTGCAGCAATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> ACTATATGGAAGGCCGCGAGTAATAAGAGATTGTGATGTGCAGCAATTTT
EX777397       --> .....................................GTGTAGCAATTTT
FD537590       --> ..........................................GCAATTTT
EX907092       --> ..................................agcaattttaagTTTT
EY918541       --> ..................................................
EW720423       --> ..................................................

               51     -    101
UN16949        --> AACACTAGCAAAATCGTTTTGGTATACAACAAACAAACAAGTCTATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> AACACTAGCAAAATCGTTTTGGTATACAACAAACAAACAAGTCTATGTCA
EX777397       --> AACACTAGCAAAATCGTTTTGGTATACAACAAACAAACAAGTCTATGTCA
FD537590       --> AACACTAGCAAAATCGTTTTGGGATATAACAAACAAACAAGTCTATGTTA
EX907092       --> AACACTAGCAAAATCGTTTTGGTATATAACAAACAAACAAGTCTATGTCA
EY918541       --> ......gGCAAAATCGTTTTGGTATACAACAAACAAACAAGTCTATGTCA
EW720423       --> ..................................................

               101    -    151
UN16949        --> TAT---------TAGA-CTCTC--AACTACACATGACAAAAAGATGGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> TAT---------TAGA-CTCTC--AACTACACATGACAAAAAGATGGGTC
EX777397       --> TAT---------TAGA-CTCTC--AACTACACATGACAAAAAGATGGGTC
FD537590       --> TAT---------TAGA-CTCTCTCAACTACACATGACAAAAAGATGGGTC
EX907092       --> TATGACTCATATTAGACCTCTC--AACTACACATGACAAAAAGATGGGTC
EY918541       --> TAT---------TAGA-CTCTC--AACTACACATGACAAAAAGATGGGTC
EW720423       --> ..................................................

               151    -    201
UN16949        --> ACATGAGGGAGGAAGCAGAAATTGTTTCTTGTTTGGGACCCCTGTTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> ACATGAGGGAGGAAGCAGAAATTGTTTCTTGTTTGGGACCCCTGTTGCAA
EX777397       --> ACATGAGGGAGGAAGCAGAAATTGTTTCTTGTTTGGGACCCCTGTTGCAA
FD537590       --> ACATGAGGGAAGAAGCAGCAATTGTTTCTTGTTTGGGACCCCTGTTGCAA
EX907092       --> ACATGATGGAGGAAGCAGCAACTGTTTCTTGTTTGGGACCCCTGTTGCAA
EY918541       --> ACATGAGGGAGGAAGCAGAAATTGTTTCTTGTTTGGGACCCCTGTTGCAA
EW720423       --> ..................................................

               201    -    251
UN16949        --> AAATGAGACTGCTCAAGCTGTCCACGATACGCTTTCACATGGACTCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> AAATGAGACTGCTCAAGCTGTCCACGATACGCTTTCACATGGACTCTCGA
EX777397       --> AAATGAAACTGCTCAAGCTGTCCACGATACGCTTTCACATGGACTCTCGA
FD537590       --> AAATGAGACTGCTCAAGCTGTCCAGGATACGCTTTCACATGGACTCTCGA
EX907092       --> AAATGAGACTGCTCAAACTGTCAAGGATACGCTTTCACATGGACTCTCGA
EY918541       --> AAATGAGACTGCTCAAGCTGTCCACGATACGCTTTCACATGGACTCTCGA
EW720423       --> ..................................................

               251    -    301
UN16949        --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ..................................................
EX773591       <-- ..................................................
EX890043       <-- ..................................................
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
EX777397       --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
FD537590       --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
EX907092       --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
EY918541       --> GAAAGAGTTCTTCTTTTATTAGCTTAGGCAACTGGGATGTTGGGTTCACC
EW720423       --> ..................................................

               301    -    351
UN16949        --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ...ggTCACAAACGCCTCAGCACGG-CCATCCTACTCAT-GCAGCGTTC-
EX773591       <-- ...............................CTACTCATTGCAGCGTTCC
EX890043       <-- ...................................TCATTGCAGCGTTCC
EV527894       <-- ..................................................
EW716137       <-- ..................................................
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
EX777397       --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
FD537590       --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
EX907092       --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
EY918541       --> AAGGTTCACAAACGCCTCAGCACGGGCCATCCTACTCATTGCAGCGTTCC
EW720423       --> ..................................................

               351    -    401
UN16949        --> ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ACGACACCAAATGGT-CAGAAACGTGTTTATGTAC-TAGCACTCTCGTTC
EX773591       <-- ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTC
EX890043       <-- ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTC
EV527894       <-- .......................................CCCTCTCGTTC
EW716137       <-- .......................................CCCTCTCGTTC
FD560554       <-- ..................................................
EY898834       <-- ..................................................
EY922604       <-- ..................................................
EX749974       <-- ..................................................
FD990074       <-- ..................................................
FD985772       --> ACGACACCAAATGGTTCAAAAACGTGTTTATGTACCTAGCCCTCTCGTTC
EX777397       --> ACGACACCAAATGGTTCAAAAACGTGTTTATGTACCTAGCCCTCTCGTTC
FD537590       --> ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTC
EX907092       --> ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCCCTCTCGTTC
EY918541       --> ACGACACCAAATGGTTCAGAAACGTGTTTATGTACCTAGCACTCTCGTTC
EW720423       --> ..................................................

               401    -    451
UN16949        --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
EX773591       <-- TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
EX890043       <-- TTGTAGTCCAGATAGTAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus sativus var. oleiformis
EV527894       <-- TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus raphanistrum subsp. maritimus
EW716137       <-- TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus sativus var. oleiformis
FD560554       <-- TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus sativus var. oleiformis
EY898834       <-- .....GTCCAGATAATAAGAGTGCCCCCACACATCCAAGCAGATGATTGG  Raphanus raphanistrum subsp. maritimus
EY922604       <-- ...........ATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
EX749974       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD990074       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985772       --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
EX777397       --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
FD537590       --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCAGATGATTGG  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> TTGTAGTCCAGATAATAAGAGTGCTCCCACACATCCAAGCTGATGATTGG  Raphanus raphanistrum subsp. landra
EW720423       --> ..................................................  Raphanus sativus var. oleiformis

               451    -    501
UN16949        --> AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- AATATCATCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
EX773591       <-- AATATCATCCCACACTAGTGGGTTAATGGCGCTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
EX890043       <-- AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTAACCACTT  Raphanus sativus var. oleiformis
EV527894       <-- AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTAACCACTT  Raphanus raphanistrum subsp. maritimus
EW716137       <-- AATATCGTCCCACACTAGTGGGTTAATGGCGTTT--GGTTTTAACCACTT  Raphanus sativus var. oleiformis
FD560554       <-- AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTAACCACTT  Raphanus sativus var. oleiformis
EY898834       <-- AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. maritimus
EY922604       <-- AATATCAT---CCACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
EX749974       <-- ...........ACACTAGTGGGTTAATGGCGTTTGAGGTTTTAACCACTT  Raphanus raphanistrum subsp. maritimus
FD990074       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985772       --> AATATCATCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
EX777397       --> AATATCATCCCACACTAGTGGGTTAATGGCGCTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
FD537590       --> AATATCGTCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> AATATCGTCCCAAACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> AATATCATCCCACACTAGTGGGTTAATGGCGTTTGAGGTTTTGACCACTT  Raphanus raphanistrum subsp. landra
EW720423       --> ......................................TTTTAACCACTT  Raphanus sativus var. oleiformis

               501    -    551
UN16949        --> CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EX773591       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EX890043       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EV527894       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EW716137       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
FD560554       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EY898834       <-- CAAGTCTTCTCTCTTCTCTATTCAAAACAAGCCAGACCCAGCCAGAACCA
EY922604       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EX749974       <-- CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
FD990074       <-- ..................................................
FD985772       --> CAAGTCTTCTCTCTTCCCTCCTCAAAACAAGCCAGACCCAGCCAGAACCA
EX777397       --> CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
FD537590       --> CAAGTCTTCTCTCTTCTCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EX907092       --> CAAGTCTTCTCTCTTCTCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EY918541       --> CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA
EW720423       --> CAAGTCTTCTCTCTTCCCTCTTCAAAACAAGCCAGACCCAGCCAGAACCA

               551    -    601
UN16949        --> AACTGAGTAAGA-GCTGCATTAGTGAACTTCTCTCTGAAATTCGTAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- AACTGAGTAAGA-GCTGCATTAGTAAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
EX773591       <-- AACTGAGTAAGA-GCTGCATTAGTAAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
EX890043       <-- AACTGAGTAAGA-GCAGCATTAGTGAACTTCTCTCTGAAATTGGTAAAGG  Raphanus sativus var. oleiformis
EV527894       <-- AACTGAGTAAGA-GCAGCATTAGTGAACTTCTCTCTGAAATTGGTAAAGG  Raphanus raphanistrum subsp. maritimus
EW716137       <-- AACTGAGTAAGA-GCTGCGTTAGTGAACTTCTCTCTGAAATTCGTAAACG  Raphanus sativus var. oleiformis
FD560554       <-- AACTGAGTAAGA-GCAGCATTAGTGAACTTCTCTCTGAAATTGGTAAAGG  Raphanus sativus var. oleiformis
EY898834       <-- AACTGAGTAAGA-GCTGCGTTAGTGAACTTCTCTCTGAAATTCGTAAATG  Raphanus raphanistrum subsp. maritimus
EY922604       <-- AACTGAGTAAGA-GCTGCATTAGTAAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
EX749974       <-- AACTGAGTAAGA-GCTGCGTTAGTGAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. maritimus
FD990074       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD985772       --> AACTGAGTAAGA-GCTGCATTAGT-AACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
EX777397       --> AACTGAGTAAGA-GCTGCATTAGTAAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
FD537590       --> AACTGAGTAAGA-GCCGCATTAGTGAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> AACTGAGTAAGA-GCTGCGTTAGTGAACTTCTCTCTGAAATTCGTAAACG  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> AACTGAGTAAGA-GCTGCATTAGTAAACTTCTCTCTGAAATTCGTAAACG  Raphanus raphanistrum subsp. landra
EW720423       --> AACTGAGTAAGAAGCTGCGTTAGTGAACTTCTCTCTGAAATTCGTAAACG  Raphanus sativus var. oleiformis

               601    -    651
UN16949        --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EX773591       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EX890043       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EV527894       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EW716137       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
FD560554       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EY898834       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EY922604       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EX749974       <-- ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
FD990074       <-- ......................................TGAGGCATGTCT
FD985772       --> A.................................................
EX777397       --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
FD537590       --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EX907092       --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EY918541       --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT
EW720423       --> ACCCAAAATCTTTCTCAATCTGCTCAAGAACACCCTTTTGAGGCATGTCT

               651    -    701
UN16949        --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
EX773591       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
EX890043       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus sativus var. oleiformis
EV527894       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. maritimus
EW716137       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATA-ACCTG  Raphanus sativus var. oleiformis
FD560554       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus sativus var. oleiformis
EY898834       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. maritimus
EY922604       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
EX749974       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTCATAGACCTG  Raphanus raphanistrum subsp. maritimus
FD990074       <-- CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
FD985772       --> ..................................................  Raphanus raphanistrum subsp. landra
EX777397       --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
FD537590       --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATAGACCTG  Raphanus raphanistrum subsp. landra
EW720423       --> CCACCACCAGGTTGCATCGACTCCCAGAAGAAATCATGGTTATA-ACCTG  Raphanus sativus var. oleiformis

               701    -    751
UN16949        --> CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- GGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. landra
EX773591       <-- GGCAGCGTTGCTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. landra
EX890043       <-- CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus sativus var. oleiformis
EV527894       <-- CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. maritimus
EW716137       <-- CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus sativus var. oleiformis
FD560554       <-- CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus sativus var. oleiformis
EY898834       <-- GGCAGCGTTGTTGAACTCAGGCAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. maritimus
EY922604       <-- GGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. landra
EX749974       <-- CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. maritimus
FD990074       <-- GGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTG-CCT  Raphanus raphanistrum subsp. landra
FD985772       --> ..................................................  Raphanus raphanistrum subsp. landra
EX777397       --> GGCAGCGTTGCTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. landra
FD537590       --> CGCAGCGTTGTTGAAC..................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> CGCAGCGTTGTTGAACTCAGGTAATGGATTGCCGTTGTTGTATGTGGCCT  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> GGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus raphanistrum subsp. landra
EW720423       --> CGCAGCGTTGTTGAACTCAGGTAAAGGATTGCCGTTGTTGTATGTGGCCT  Raphanus sativus var. oleiformis

               751    -    801
UN16949        --> TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EX773591       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EX890043       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EV527894       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EW716137       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
FD560554       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EY898834       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EY922604       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EX749974       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
FD990074       <-- TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
FD985772       --> ..................................................
EX777397       --> TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTT......
FD537590       --> ..................................................
EX907092       --> TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EY918541       --> TGATAAGCTCTTCCATGGTGTATCC-ATAGAGTCTATCGTCTTTCCCTAA
EW720423       --> TGATAAGCTCTTCCATGGTGTATCCCATAGAGTCTATCGTCTTTCCCTAA

               801    -    851
UN16949        --> CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EX773591       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EX890043       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EV527894       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EW716137       <-- CTGTTTATTAAGATTGTCCACATAGCCTCGG-TGGTGTTTACCTCAATGC
FD560554       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EY898834       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EY922604       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EX749974       <-- CTGTTTATTAAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
FD990074       <-- CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
FD985772       --> ..................................................
EX777397       --> ..................................................
FD537590       --> ..................................................
EX907092       --> CTGTTTATTAAGATTGTCCACATAGCCTCGG-TGGTGTTT..........
EY918541       --> CTGTTTATTTAGATTGTCCACATAGCCTCGG-TGGTGTTTACCCCAATGC
EW720423       --> CTGTTTATTAAGATTGTCCACATAGCCTCGGGTGGTGTTTACCTCAATGC

               851    -    901
UN16949        --> ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ACTTCCAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EX773591       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EX890043       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EV527894       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EW716137       <-- AATTCTAGTGTTCTCTGACTCATATACGGTTCCAAAGCATCAAGAGGATA
FD560554       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EY898834       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EY922604       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
EX749974       <-- AATTCTAGTGTTCTCTGACTCATATACGGTTCCAAAGCATCAAGAGGATA
FD990074       <-- ACTTCTAGTGTTCTTTGACTCATATATGGTTCCAAAGCATCAAGAGGATA
FD985772       --> ..................................................
EX777397       --> ..................................................
FD537590       --> ..................................................
EX907092       --> ..................................................
EY918541       --> ACTTCCAGTGTT......................................
EW720423       --> AATTCTAGTGTTCTCTGACTCATATACGGTTCCAAAGCATCAAGAG....

               901    -    951
UN16949        --> AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG  Raphanus raphanistrum subsp. landra
EX773591       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG  Raphanus raphanistrum subsp. landra
EX890043       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCACCTCCTG  Raphanus sativus var. oleiformis
EV527894       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCACCTCCTG  Raphanus raphanistrum subsp. maritimus
EW716137       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCACCTCCTG  Raphanus sativus var. oleiformis
FD560554       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCACCTCCTG  Raphanus sativus var. oleiformis
EY898834       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG  Raphanus raphanistrum subsp. maritimus
EY922604       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG  Raphanus raphanistrum subsp. landra
EX749974       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCACCTCCTG  Raphanus raphanistrum subsp. maritimus
FD990074       <-- AGGAGGGGTCTTCAGACCATAGTAAGCTTCAACCTTTAAACCATCTCCTG  Raphanus raphanistrum subsp. landra
FD985772       --> ..................................................  Raphanus raphanistrum subsp. landra
EX777397       --> ..................................................  Raphanus raphanistrum subsp. landra
FD537590       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720423       --> ..................................................  Raphanus sativus var. oleiformis

               951    -   1001
UN16949        --> ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- ACCGAAGAGAACGTCTTCTCTGCCGCTG---ATTACTCAGAGGGACAAGT  Raphanus raphanistrum subsp. landra
EX773591       <-- ACCGAAGAGAACGTCTTCTCTGC---TGCTGATTACTCAGAGGGACAAGT  Raphanus raphanistrum subsp. landra
EX890043       <-- ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAAGC  Raphanus sativus var. oleiformis
EV527894       <-- ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAAGC  Raphanus raphanistrum subsp. maritimus
EW716137       <-- ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAAGC  Raphanus sativus var. oleiformis
FD560554       <-- ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAAGC  Raphanus sativus var. oleiformis
EY898834       <-- ACCGAAGAGAACGTCTTCTCTGC---TGCTGATTACTCAGAGGGACAAGT  Raphanus raphanistrum subsp. maritimus
EY922604       <-- ACCGAAGAGAACGTCTTCTCTGC---TGCTGATTACTCAGAGGGACAAGT  Raphanus raphanistrum subsp. landra
EX749974       <-- ACCGAAGAGAACGTCTTCTCTGC---TG---ATTACTCAGAGGGACAGGC  Raphanus raphanistrum subsp. maritimus
FD990074       <-- ACCGAAGAGAACGTCTTCTCTGC---TGCTGATTACTCAGAGGGACAAGT  Raphanus raphanistrum subsp. landra
FD985772       --> ..................................................  Raphanus raphanistrum subsp. landra
EX777397       --> ..................................................  Raphanus raphanistrum subsp. landra
FD537590       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX907092       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY918541       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720423       --> ..................................................  Raphanus sativus var. oleiformis

               1001   -   1051
UN16949        --> TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EX773591       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EX890043       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EV527894       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EW716137       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
FD560554       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EY898834       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EY922604       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
EX749974       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
FD990074       <-- TTGGAGGACTTCAAACGAATACTAGAAGAATCTGAAAGAGTACAGAAACT
FD985772       --> ..................................................
EX777397       --> ..................................................
FD537590       --> ..................................................
EX907092       --> ..................................................
EY918541       --> ..................................................
EW720423       --> ..................................................

               1051   -   1101
UN16949        --> GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTcc...............
EX773591       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTcc..............
EX890043       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTA-AAAAAACAGAGAGT
EV527894       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTA-AAAAAACAGAGAGT
EW716137       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGT
FD560554       <-- ..................................................
EY898834       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGT
EY922604       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGT
EX749974       <-- GCTTGTCGTCGTCACAACACAAG...........................
FD990074       <-- GCTTGTCGTCGTCACAACACAAGAAGCCATTGTTAGAGAAAACAGAGAGT
FD985772       --> ..................................................
EX777397       --> ..................................................
FD537590       --> ..................................................
EX907092       --> ..................................................
EY918541       --> ..................................................
EW720423       --> ..................................................

               1101   -   1151
UN16949        --> T-GCTTCTTCACACTCCTGCTTTTTTACAGAAGACAGAGACCTTATCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY922608       <-- .................................................
EX773591       <-- .................................................
EX890043       <-- TTGCTTCTTCACACTCCTGCTTTTTTACACAAGACAGAGACCTTcc...
EV527894       <-- TTGCTTCTTCACACTCCTGCTTTTTTACACAAGACAGAGACCTTcc...
EW716137       <-- Tcc..............................................
FD560554       <-- .................................................
EY898834       <-- T-GCTTCTTCACcc...................................
EY922604       <-- T-GCTTCTTCACACTCCTGCTTTTTTACAGAAGACAGAGACCTTATCCC
EX749974       <-- .................................................
FD990074       <-- T-GCTTCTTCACACTCCTGCTTTTTTACAGAAGACAGAGACCTTccc..
FD985772       --> .................................................
EX777397       --> .................................................
FD537590       --> .................................................
EX907092       --> .................................................
EY918541       --> .................................................
EW720423       --> .................................................