1      -     51
UN16952        --> GGATATGAACTGTTAGCACCACCTTGGCAGCAGCAGCGGGAGTTGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- ..........................GCAGCAGCAGCGGGAGTTGCAGAG
FD575488       <-- .................ggcttcgcaGCAGCAGCAGCGGGAGTTGCAGAG
FD966464       <-- ..................................................
FD539979       <-- ..................................................
EV535256       --> GGATATGAACTGTTAGCACCACCTTGGCAGCAGCAGCGGGAGTTGCAGAG
FD969999       --> ......gggttagcAGCACCACCTTGGCAGCAGCAGCGGGAGTTGCAGAG
FD571702       --> .................ggcttcgcaGCAGCAGCAGCGGGAGTTGCAGAG
FD986469       --> .......................................gggcagagtct
FD544347       --> ..................................................

               51     -    101
UN16952        --> TCTGAACTGTTAAAAATGGCGACCATGACTTCTCTTCAGAGCTCGTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- TCTGAACTGTTAAAAATGGCGACAATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575488       <-- TCTGAACTGTTAAAAATGGCGACCATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus sativus cv Early Scarlet Globe
FD966464       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539979       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535256       --> TCTGAACTGTTAAAAATGGCGACAATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969999       --> TCTGAACTGTTAAAAATGGCGACAATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571702       --> TCTGAACTGTTAAAAATGGCGACCATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus sativus cv Early Scarlet Globe
FD986469       --> gaaaaagaaaacAAAATGGCGACCATGACTTCTCTTCAGAGCTCGTTTAC  Raphanus raphanistrum subsp. landra
FD544347       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               101    -    151
UN16952        --> ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD575488       <-- ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD966464       <-- ...TCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD539979       <-- ..................................................
EV535256       --> ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD969999       --> ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD571702       --> ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCC
FD986469       --> ATCTCTTTCGATATCCTCATCCCCTTCCTCCTTCCTCGGCCAGCGTCTCA
FD544347       --> ..................................................

               151    -    201
UN16952        --> TTTCCCCGATTTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCA-AA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- TTTCCCCGATTTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCA-TA-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575488       <-- TTTCCCCGATCTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCAGAAC  Raphanus sativus cv Early Scarlet Globe
FD966464       <-- TTTCCCCAATTTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCG-AA-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539979       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535256       --> TTTCCCCGATTTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCA-TA-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969999       --> TTTCCCCAATTTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCG-GA-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571702       --> TTTCCCCGATCTCCCTCTCCGCCGCTTCTCCGGTCAAGCCCGCCCAGAAC  Raphanus sativus cv Early Scarlet Globe
FD986469       --> TTTCCCCGATTTCCCTCTCCGCCGCTTCTCCGGTCAATCCCGCCCAGAAC  Raphanus raphanistrum subsp. landra
FD544347       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN16952        --> -ACCCATGTCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- -ACCCATGTCTTGTTTTCGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575488       <-- CACCCATGTCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus sativus cv Early Scarlet Globe
FD966464       <-- -ACCCATGCCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539979       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535256       --> -ACCCATGTCTTGTTTTCGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969999       --> -ACCCATGCCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571702       --> CACCCATGTCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus sativus cv Early Scarlet Globe
FD986469       --> CACCCATGTCTTGTTTTTGCAAAGCTTAAGCGTTGGGAACGGAAGAAATG  Raphanus raphanistrum subsp. landra
FD544347       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN16952        --> CAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- CAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD575488       <-- CAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD966464       <-- TAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD539979       <-- ..................................................
EV535256       --> CAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD969999       --> TAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD571702       --> CAAACCAAACAGTCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD986469       --> CAAACCAAACAATCTTCCAATTCTGCACAAAATGCATGTCAAGTTTGGAG
FD544347       --> ..................................................

               301    -    351
UN16952        --> ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGAGAAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGAGAAGTC
FD575488       <-- ATACTGTCAAAGTTATCTCTGGCCGAGACAAGGGTAAGATTGGAGAAGTC
FD966464       <-- ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGAGAAGTC
FD539979       <-- ..................................................
EV535256       --> ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGAGAAGTC
FD969999       --> ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGAGAAGTC
FD571702       --> ATACTGTCAAAGTTATCTCTGGCCGAGACAAGGGTAAGATTGGAGAAGTC
FD986469       --> ATACTGTCAAAGTTATCTCTGGACGAGACAAGGGTAAGATTGGTGAAGTC
FD544347       --> ..................................................

               351    -    401
UN16952        --> ACTAAGATCTTTACCCACAACAGCACCATCGTCATCAACGATGTCAACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- ACTAAGATCTTTACCCACAACAGCACCATCGTCATCAACGATGTCAACCT
FD575488       <-- ACTAAGATCTTTACCCACAACAGCACCATCGTTATCAACGATGTCAACCT
FD966464       <-- ACTAAGATCTTTACCCACAACAGCACCATTGTCATCAACGATGTCAACCT
FD539979       <-- ..................................................
EV535256       --> ACTAAGATCTTTACCCACAACAGCACCATCGTCATCAACGATGTCAACCT
FD969999       --> ACTAAGATCTTTACCCACAACAGCACCATTGTCATCAACGATGTCAACCT
FD571702       --> ACTAAGATCTTTACCCACAACAGCACCATCGTTATCAACGATGTCAACCT
FD986469       --> ACTAAGATCTTTACCCACAACAGCACCATTGTCATCAACGATGTCAACCT
FD544347       --> ................................................gT

               401    -    451
UN16952        --> CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD575488       <-- CAAGACCAAACACATGAATAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD966464       <-- CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD539979       <-- ..................................................
EV535256       --> CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD969999       --> CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD571702       --> CAAGACCAAACACATGAATAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG
FD986469       --> CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTG-TCAAATTG
FD544347       --> CAAGACCAAACACATGAAGAGCCGGGAAGAGGGGGAGCCTGGTCAAATTG

               451    -    501
UN16952        --> TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD575488       <-- TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD966464       <-- TCAAGATCGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD539979       <-- ..................................................
EV535256       --> TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD969999       --> TCAAGATCGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD571702       --> TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD986469       --> TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA
FD544347       --> TCAAGATTGAAGCACCGATACACAGCTCAAATGTGATGCTGTATTCGAAA

               501    -    551
UN16952        --> GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
FD575488       <-- GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
FD966464       <-- GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAGGATGGACA
FD539979       <-- ..................................................
EV535256       --> GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
FD969999       --> GA................................................
FD571702       --> GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
FD986469       --> GAAAAGGAGGTTGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA
FD544347       --> GAAAAGGAGGTGGTAAGCCGGGTGGGTCACAAGGTCCTTGAAGATGGACA

               551    -    601
UN16952        --> GAAGGTAAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- GAAGGTAAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
FD575488       <-- GAAGGTTAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
FD966464       <-- GAAGGTTAGGTATCTGATCAAAACTGGGGAACTTATCGACACGGTTGAGA
FD539979       <-- .................TCAAAACTGGGGAACTTATCGACACCGTTGAGA
EV535256       --> GAAGGTAAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
FD969999       --> ..................................................
FD571702       --> GAAGGTTAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
FD986469       --> GAAGGTAAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA
FD544347       --> GAAGGTAAGGTATCTGATCAAAACTGGGGAACTTATCGACACCGTTGAGA

               601    -    651
UN16952        --> AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD575488       <-- AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD966464       <-- AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD539979       <-- AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
EV535256       --> AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD969999       --> ..................................................
FD571702       --> AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD986469       --> AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA
FD544347       --> AGTGGAAGCAACTTAAGGAGGCAAAGGATAAAGAAACATCTGCAGTTACA

               651    -    701
UN16952        --> GTTGCCTCCACATCTTAGCATGTCACCTATTTCTTCTTCATTGCACTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- GTTGCCTCCACATCTTAGCATGTCACCTATTTCTTCTTCATTGCACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD575488       <-- GTGGCCTCCACATCTTAGCATGTCACCTGTTTCTTCTTCATTGCACTTTC  Raphanus sativus cv Early Scarlet Globe
FD966464       <-- GTTGCCTCCACATCTTAGCATGTCACCTATTTCTTCTTCATTGCACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539979       <-- GTTGCCTCCACATCTTAGCATGTCACCTATTTTTTTTTCATTGCACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535256       --> GTTGCCTCCACATCTTAGCATGTCACCTATTTCTTCTTCATTGCACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969999       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD571702       --> GTGGCCTCCACATCTTAGCATGTCACCTGTTTCTTCTTCATTGCACTTTC  Raphanus sativus cv Early Scarlet Globe
FD986469       --> GTTGCCTCCACATCTTAGCATGTCACATGTTTCTTCTTCATTGCACTTTT  Raphanus raphanistrum subsp. landra
FD544347       --> GTTGCCTCCACATCTTAGCATGTCACCTATTTCTTCTTCATTGCACTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN16952        --> GTTTGTAGGCTAATGAGACCTATCTATGTATTTGATGGATAAATTGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- GTTTGTAGGCTAAGGAGACCTATCTATGTATTTGATGGATAAATTGAATC
FD575488       <-- GTTTGTAGACTAATG-GACC----TATGTATTTGATGGATAAATTGAATC
FD966464       <-- GTTTGTAGACTAATG-GATCTA--TATGTATTTGATGGATAAATTGAATC
FD539979       <-- GTTTGTAGGCTAAGGAGACCTATCTATGTATTTGATGGATAAATTGAATC
EV535256       --> GTTTGTAGGCT.......................................
FD969999       --> ..................................................
FD571702       --> GTTTGTAGACTAATG-GACCTAT----GTATTTGATGGATAAATTGAA..
FD986469       --> GTTTGT............................................
FD544347       --> GTTTGTAGGCTAAGGAGACCTATCTATGTATTTGATGGATAAATTGAATC

               751    -    801
UN16952        --> CCTTTCAAGGTAAAGTGTAAAATTTATACCAGATAAAGAACACCTTCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV539986       <-- CCTTTCAAGGTAAAGTGTAAAATTTATACCAGATAAAGAACACCTTCTGC
FD575488       <-- CCTTTCAAGGTAAAGTGTAAAATTTATACC....................
FD966464       <-- CCTTTCAAGGc.......................................
FD539979       <-- CCTTTCAAGGTAAAGTGTAAAATTTATACCAGATAAAGAACACCTTCTGC
EV535256       --> ..................................................
FD969999       --> ..................................................
FD571702       --> ..................................................
FD986469       --> ..................................................
FD544347       --> CCTTTCAAGGTAAAGTGTAAAATTTATACCAGATAAAGAACACCTTCTGC

               801    -    851
UN16952        --> ACGGAC
                   ~~~~~~
EV539986       <-- ACGG..
FD575488       <-- ......
FD966464       <-- ......
FD539979       <-- ACGGAC
EV535256       --> ......
FD969999       --> ......
FD571702       --> ......
FD986469       --> ......
FD544347       --> ACGGAC