RadishBase

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Alignment for radish unigene UN16955

               1      -     51
UN16955        --> AGGGACAACATCACTGGACCGACCAACTCCAAAGCAAAGTCCAAATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ..................................................
EX768551       <-- ..................................................
FD960755       <-- ..................................................
EX892954       <-- ..................................................
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> AGGGACAACATCACTGGACCGACCAACTCCAAAGCAAAGTCCAAATCAAA
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> ..................................................

               51     -    101
UN16955        --> ACTTGTCTCTTCCTTCTCTAACTTACAAAAAAAAACCCTAAACTCCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ..................................................
EX768551       <-- ..................................................
FD960755       <-- ..................................................
EX892954       <-- ..................................................
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> ACTTGTCTCTTCCTTCTCTAACTTACAAAAAAAAACCCTAAACTCCCAAT
EY930712       --> ......................ggACAAAAAAAAACCCTAAACTCCCA-T
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> ..................................................

               101    -    151
UN16955        --> TTTCTCATTCACTCTTTTTTTTTCTTCTCGCTGAAAATGGAAGACGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX768551       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892954       <-- ..................................................  Raphanus sativus var. oleiformis
EX901717       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX760728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> TTTCTCATTCACTCTTTTTTTTTCTT-TCGCTGAAAATGGAAGACGAAGA  Raphanus sativus var. oleiformis
EY930712       --> TTTCTCATTCACTCTTTTTTTT-CTT-TCGCTGAAAATGGAAGACGAAGA  Raphanus sativus var. oleiformis
EX764679       --> ................TTTTTCTTTTTTCGCTGAAAATGGAAGACGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> ................TTTTTTTCTTCTCGCTGAAAATGGAAGACGAAGA  Raphanus sativus cv Early Scarlet Globe
FD551233       --> ................TTTTTCTTTTTTCGCTGAAAATGGAAGACGAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> ..................TTTTTTTTCTCGCTGAAAATGGAAGACGAAGA  Raphanus sativus cv Early Scarlet Globe
FD557702       --> ..........................CTCGCTGAAAATGGAAGACGAAGA  Raphanus raphanistrum subsp. landra
FD534475       --> ...........................ggGCTGAAAATGGAAGACGAAGA  Raphanus raphanistrum subsp. maritimus
EY922465       --> ..............................ggGAAAATGGAAGACGAAGA  Raphanus raphanistrum subsp. landra
FD964863       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX757053       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN16955        --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ..................................................
EX768551       <-- ..................................................
FD960755       <-- ..................................................
EX892954       <-- ..................................................
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
EY930712       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
EX764679       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
EX898085       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
FD551233       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
FD946555       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
FD557702       --> AGGCATCGGGGTAACTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
FD534475       --> AGGCATCGGGGTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
EY922465       --> AGGCATCGGGTTAATTCTAGCCAGAGCCACCGAGCTAAGACTCAAGATCA
FD964863       --> ..................................................
EX757053       --> ..................................................

               201    -    251
UN16955        --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ..................................................
EX768551       <-- ..................................................
FD960755       <-- ..................................................
EX892954       <-- ..................................................
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
EY930712       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
EX764679       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCGGAGAAGGA
EX898085       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
FD551233       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCGGAGAAGGA
FD946555       --> ACGATTGTATCGATACCTCCAGCACCGATTCTTCTTCTCCCAGAGAAGGA
FD557702       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
FD534475       --> ACGATTGTATCGATACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
EY922465       --> ACGATTGTATCGAAACCTCCAGCACCGATGTTTCTTCTCCCAGAGAAGGA
FD964863       --> ...................................gCTCCCAGAGAAGGA
EX757053       --> ..............................................gGGA

               251    -    301
UN16955        --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ...............................AGGATTTTGACTCATTCAG
EX768551       <-- ..................................................
FD960755       <-- ..................................................
EX892954       <-- ..................................................
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
EY930712       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
EX764679       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCTTTCAG
EX898085       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
FD551233       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCTTTCAG
FD946555       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
FD557702       --> AAGAAGGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
FD534475       --> AAGAAAGATGAGATCACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
EY922465       --> AAGAAAGATGAGATCACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
FD964863       --> AAGAAAGATGAGATCACTGGACTTCAAGAAAAGGATTTTGACTCATTCAG
EX757053       --> AAGAAAGATGAGATTACTGGACTTCAAGAAAAGGATTTTGACTCTTTCAG

               301    -    351
UN16955        --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus raphanistrum subsp. maritimus
EX768551       <-- ...........atGATGAAGAAGAAGAATCTGGTGAACAGCTTTTGCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892954       <-- ..................................................  Raphanus sativus var. oleiformis
EX901717       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX760728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus sativus var. oleiformis
EY930712       --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus sativus var. oleiformis
EX764679       --> CTCTGA-----T-GATGAAGAAGAAGAATCTGGTGAACAGCTTTTGCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> CTCTGACGATGTGGATGATAAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus sativus cv Early Scarlet Globe
FD551233       --> CTCTGA-----T-GATGAAGAAGAAGAATCTTGTGAACAGCTTTTGCGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> CTCTGACGATGTGGATGATAAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus sativus cv Early Scarlet Globe
FD557702       --> CTCCGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus raphanistrum subsp. landra
FD534475       --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTGTA  Raphanus raphanistrum subsp. maritimus
EY922465       --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTCTA  Raphanus raphanistrum subsp. landra
FD964863       --> CTCTGACGATGTGGATGATGAAGAAGAATCTGGTGAACAGCTTTTGTCTA  Raphanus raphanistrum subsp. maritimus
EX757053       --> CTCTGA-----T-GATGAAGAAGAAGAATCTGGTGAACAGCTTTTGCGTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN16955        --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. maritimus
EX768551       <-- TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- ........................AGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. maritimus
EX892954       <-- ..................................................  Raphanus sativus var. oleiformis
EX901717       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX760728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus sativus var. oleiformis
EY930712       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus sativus var. oleiformis
EX764679       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> TACGCGATGCTCTCGAATCTCTCGAGTCTCAGCTTGC.............  Raphanus sativus cv Early Scarlet Globe
FD551233       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> TACGCGATGCTCTCGAATCTCTCGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus sativus cv Early Scarlet Globe
FD557702       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. landra
FD534475       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. maritimus
EY922465       --> TACGCGATGCTCTCGAATCTCTCGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. landra
FD964863       --> TACGCGAATCTCTCGAATCTCTCGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. maritimus
EX757053       --> TACGCGATGCTCTCGAATCTCTTGAGTCTCAGCTTGCTGCTTTACAGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN16955        --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- CTACGGCAAAGGCAACAGTATGAGAAACAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. maritimus
EX768551       <-- CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. maritimus
EX892954       <-- ........AAGGCAACAGTATGAGAAACAAGTAGCTCTCTCTGAGATTGA  Raphanus sativus var. oleiformis
EX901717       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX760728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> CTACGGCAAAGGCAACAGTATGAGAAACAAGTAGCTCTCTCTGAGATTGA  Raphanus sativus var. oleiformis
EY930712       --> CTACGGCAAAGGCAACAGTATGAGAAACAAGTAGCTCTCTCTGAGATTGA  Raphanus sativus var. oleiformis
EX764679       --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD551233       --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCCGAGATTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> CTACGGCAAAGGCAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus sativus cv Early Scarlet Globe
FD557702       --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. landra
FD534475       --> CTACGGCAAAGGCAACAGTATGAGAAACAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. maritimus
EY922465       --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. landra
FD964863       --> CTACGGCAAAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. maritimus
EX757053       --> CTACGGCATAGACAACAGTATGAGAAGCAAGTAGCTCTCTCTGAGATTGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN16955        --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX768551       <-- TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
FD960755       <-- TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX892954       <-- TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EY930712       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX764679       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX898085       --> ..................................................
FD551233       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
FD946555       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
FD557702       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
FD534475       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EY922465       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
FD964863       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG
EX757053       --> TTACAGCAGGAAGATGTTGCTTGAGAAGCTCAAGGAGTACAAAGGGAAAG

               501    -    551
UN16955        --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EX768551       <-- AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAGGAGTTGAC
FD960755       <-- AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EX892954       <-- AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EX901717       <-- ..................................................
FD942658       <-- ..................................................
EY918424       <-- ..................................................
EX760728       <-- ..................................................
EX889163       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EY930712       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EX764679       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAGGAGTTGAC
EX898085       --> ..................................................
FD551233       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAGAGAGTTGAC
FD946555       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
FD557702       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
FD534475       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EY922465       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
FD964863       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC
EX757053       --> AACTTGAAGTGCTAAGCGAGGCTTCAACTTTTGCTGGCGAAAGAGTTGAC

               551    -    601
UN16955        --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- T-T-AGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EX768551       <-- TATGAGAACGATCTTCTCCCTCCTCCTTACCCTGTTCACCCTCCTCTTCC
FD960755       <-- TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCT
EX892954       <-- TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EX901717       <-- .............TTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
FD942658       <-- .............TTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EY918424       <-- .....................................tttacCCTCCTCT
EX760728       <-- ..............................................TTCC
EX889163       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EY930712       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EX764679       --> TATGAGAACGATCTTCTCCCTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EX898085       --> ..................................................
FD551233       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
FD946555       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
FD557702       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
FD534475       --> T-T-AGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCC
EY922465       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTTACCCTCCTCTTC-
FD964863       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCCTGTTCACCCTCCTCTTCT
EX757053       --> TATGAGAACGATCTTCTCCTTCCTCCTTACCC--CCCACCCTCCTCTTCC

               601    -    651
UN16955        --> TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. maritimus
EX768551       <-- TCTCTCCCTCGGTTTGGATAATAA---CAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- TCTCTCCCTCGGTTTGGATAATAA---TAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. maritimus
EX892954       <-- TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus var. oleiformis
EX901717       <-- TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- TCTCTCCC-CGGTTTACATAATAA---CAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. landra
EX760728       <-- TTTCTCCCTCGGTTTGGATAGTAA---CAATGCCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus var. oleiformis
EY930712       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus var. oleiformis
EX764679       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD551233       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus sativus cv Early Scarlet Globe
FD557702       --> TCTCTCCCTCGGTTTGGATAATAATAACAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. landra
FD534475       --> TCTCTCCCTCGGTTTGGATAATAA---CAATGCCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. maritimus
EY922465       --> --TCTCCC-CGGTTTACATAATAA---CAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. landra
FD964863       --> TCTCTCCCTCGGTTTGGATAATAA---TAATGGCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. maritimus
EX757053       --> TCTCTCCCTCGGTTTGGATAGTAA---CAATGCCTACTTACCTCATTTAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN16955        --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX768551       <-- CGTCGAAGCAGAAGAAACCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
FD960755       <-- CGTCAAAGCAGAAGAAATCTTCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX892954       <-- CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX901717       <-- CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
FD942658       <-- CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EY918424       <-- CGTCAAAACAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX760728       <-- CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX889163       --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGC....
EY930712       --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX764679       --> CGTCGAAGCAGAAGAAACCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX898085       --> ..................................................
FD551233       --> CGTCGAAGCAGAAGAAACCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
FD946555       --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
FD557702       --> CGTCAAAGCAGAAGAAATCTACAGATGCAAATGGGTTTGGCTCAGCAGAG
FD534475       --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG
EY922465       --> CGTCAAAACAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGA.
FD964863       --> CGTCAAAGCAGAAGAAATCTTCAGATGCAAATGGGTTTGGCTCAGCAGAG
EX757053       --> CGTCAAAGCAGAAGAAATCTGCAGATGCAAATGGGTTTGGCTCAGCAGAG

               701    -    751
UN16955        --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX768551       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
FD960755       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX892954       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX901717       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
FD942658       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EY918424       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX760728       <-- GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX889163       --> ..................................................
EY930712       --> GTCAAGGGTCCTAATGGAGTTGTTCGCctc....................
EX764679       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTC....................
EX898085       --> ..................................................
FD551233       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
FD946555       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
FD557702       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTC....................
FD534475       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EY922465       --> ..................................................
FD964863       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT
EX757053       --> GTCAAGGGTCCTAATGGAGTTGTTCGCTTCTTAGGCTCTGTTGCAAAGAT

               751    -    801
UN16955        --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EX768551       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTACTTCCGGTTATG
FD960755       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EX892954       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EX901717       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
FD942658       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EY918424       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EX760728       <-- CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTACTTCCGGTTATG
FD946555       --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
FD557702       --> ..................................................
FD534475       --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG
EY922465       --> ..................................................
FD964863       --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCT..........
EX757053       --> CATGCTACCAATCATCGGCGTCATTTCAGTCTTGTCTGCTTCCGGTTATG

               801    -    851
UN16955        --> GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus raphanistrum subsp. maritimus
EX768551       <-- GTCCAGAGATCAAGAAAAGAGGTGTGTCATTCAAACTTATGGGGCTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD960755       <-- GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCGAACTTCTGGGGCTTCTC  Raphanus raphanistrum subsp. maritimus
EX892954       <-- GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus sativus var. oleiformis
EX901717       <-- GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus sativus cv Early Scarlet Globe
FD942658       <-- GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus sativus cv Early Scarlet Globe
EY918424       <-- GTCCAGAGATCAAGAAAAGAGGTGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus raphanistrum subsp. landra
EX760728       <-- GTCCAGAGATCAAGAAAAGAGGTGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX889163       --> ..................................................  Raphanus sativus var. oleiformis
EY930712       --> ..................................................  Raphanus sativus var. oleiformis
EX764679       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX898085       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD551233       --> GTCCAGAGATCAAGAAAAGAG-TGTGTCATTCAAACTTATGGGGCTTCTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD946555       --> GTCCAGAGATCAAGAAAAGAGGAGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus sativus cv Early Scarlet Globe
FD557702       --> ..................................................  Raphanus raphanistrum subsp. landra
FD534475       --> GTCCAGAGATCAAGAAAAG...............................  Raphanus raphanistrum subsp. maritimus
EY922465       --> ..................................................  Raphanus raphanistrum subsp. landra
FD964863       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX757053       --> GTCCAGAGATCAAGAAAAGAGGTGTGTCATTCAAACTTCTGGGGCTTCTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN16955        --> CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
EX768551       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAGTGCCCGCCTGGGAAAGTTCT
FD960755       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
EX892954       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
EX901717       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
FD942658       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
EY918424       <-- CCTCAACGATTAGTCAGAGCACCTAATCAATGCCCGCCTGGGAAAGTTCT
EX760728       <-- CCTCAACGAGTAGTCAGAGCACCTAATCAGTGCCCGCCTGGGAAAGTTCT
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> CCTCAACGAGTAGTCAGAGCA.............................
FD946555       --> CCTCAACGAGTAGTCAGAGCACCTAATCAtg...................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> CCTCAACGAGTAGTCAGAGCACCTAATCAGTGCCCGCCTGGGAAAGTTCT

               901    -    951
UN16955        --> AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- AGTGATTGAAGACGGTAAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
EX768551       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
FD960755       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAaa.......
EX892954       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
EX901717       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
FD942658       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
EY918424       <-- AGTGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
EX760728       <-- GATGATTGAAGACGGTGAAGCAAGGTGTCTTGTGAAGGAAAGAGTCGAAA
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> GATGATTGAAG.......................................

               951    -   1001
UN16955        --> TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
EX768551       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
FD960755       <-- ..................................................
EX892954       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
EX901717       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
FD942658       <-- TATCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
EY918424       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
EX760728       <-- TACCTTTTGACTCGGTGGTTGCAAAACGAGATGTAACATACGGATACGGT
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> ..................................................

               1001   -   1051
UN16955        --> TGAACTGAATGAAA-----AA-----AA--CTCCTTTCTCTGTAATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- TGAACTGAATGAAA-----AA-----AA--CTCCTTTCTCTGTAATCTTT
EX768551       <-- TGAACTGAATGAAAGAAAAAA-----AA--CGCCTTTCTCTGTAATCTTT
FD960755       <-- ..................................................
EX892954       <-- TGAACTGAATGAAA-----AA-----AA--CTCCTTTCTCTGTAATCTTT
EX901717       <-- TGAACTGAATGAAA-----AA-----AA--CTCCTTTCTCTGTAATCTTT
FD942658       <-- TGAACTGAATGAAA-----AA-----AA--CTCCTTTCTCTGTAATCTTT
EY918424       <-- TGAACTGAATGAAA-----AAGAAAAAA--CACCTTTCTCTGTAATCTTT
EX760728       <-- TGAACTAAATGAAA-----AA-----AAAACGCCTTTCTCTGTAATCTTT
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> ..................................................

               1051   -   1101
UN16955        --> ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCTCTTTAACTCTCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530401       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCT..............
EX768551       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCc..............
FD960755       <-- ..................................................
EX892954       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCTCTTTAACTCTCCCA
EX901717       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTCTATCTCTTTAACTCTCCC.
FD942658       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCTCTTTAACTCTCCC.
EY918424       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTAccc..............
EX760728       <-- ACTGCCTCCACTGTGTAACGTTTCAACCTTTTATCcc.............
EX889163       --> ..................................................
EY930712       --> ..................................................
EX764679       --> ..................................................
EX898085       --> ..................................................
FD551233       --> ..................................................
FD946555       --> ..................................................
FD557702       --> ..................................................
FD534475       --> ..................................................
EY922465       --> ..................................................
FD964863       --> ..................................................
EX757053       --> ..................................................

               1101   -   1151
UN16955        --> AAGTTTTGTTCTTTG
                   ~~~~~~~~~~~~~~~
FD530401       <-- ...............
EX768551       <-- ...............
FD960755       <-- ...............
EX892954       <-- AAGTTTTGTTCTTTG
EX901717       <-- ...............
FD942658       <-- ...............
EY918424       <-- ...............
EX760728       <-- ...............
EX889163       --> ...............
EY930712       --> ...............
EX764679       --> ...............
EX898085       --> ...............
FD551233       --> ...............
FD946555       --> ...............
FD557702       --> ...............
FD534475       --> ...............
EY922465       --> ...............
FD964863       --> ...............
EX757053       --> ...............