RadishBase

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Alignment for radish unigene UN16958

               1      -     51
UN16958        --> GGAAATTTGCGTTTATTACAAGACCCAAACCTCTCTTCTCTCTCACTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> GGAAATTTGCGTTTATTACAAGACCCAAACCTCTCTTCTCTCTCACTTTC
EW722507       --> ............................................ggcctg
EW722598       --> ............................................ggcctg
EW726830       --> ............................................ggcctg
EX756070       --> ...............................................ggg
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> ..................................................
FD535967       --> ..................................................

               51     -    101
UN16958        --> CAGCTACTTCTCTCTC-CCCCTCTGTTTCTCTCTGCTTCTCTCTCTATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> CAGCTACTTTTCTCTCTCTCCTCTGTTTCTCTCTGCTTCTCTCT--ATCT
EW722507       --> CAGCTACTTCTCTCTC-CCCCTCTGTTTCTCTCTGCTTCTCTCTCTATCT
EW722598       --> CAGCTACTTCTCTCTC-CCCCTCTGTTTCTCTCTGCTTCTCTCTCTATCT
EW726830       --> CAGCTACTTCTCTCTC-CCCCTCTGTTTCTCTCTGCTTCTCTCTCTATCT
EX756070       --> CAGCTACTTCTCTCTC-CCCCTCTGCTTCTCTCTGCTTCTCTCTCTATCT
FY452246       --> ............................................CTATCT
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> ..................................................
FD535967       --> ..................................................

               101    -    151
UN16958        --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCTCTCCTCAGGT
EW722507       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
EW722598       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
EW726830       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
EX756070       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
FY452246       --> GGCCAATGGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
FY428128       --> .......GGCTACTGGATCGACAGATTCCCCTACCTCCCGCTCCTCAGGT
FD534890       --> ..................................................
EW725363       --> ..................................................
FD535967       --> ..................................................

               151    -    201
UN16958        --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
EW722507       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
EW722598       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
EW726830       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
EX756070       --> GTTCTCTACAAGCTGTTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
FY452246       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
FY428128       --> GTTCTCTACAAGCTGCTGGTCGTGTTCTCTGTATGTATAGCTACTTCCAC
FD534890       --> ..............................................ggAC
EW725363       --> ..................................................
FD535967       --> ..................................................

               201    -    251
UN16958        --> TTATCAAGCACTCCAGCCTCCTCCTCCAAAGCTATGCGGCTCTCCCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> TTATCAAGCACTCCAGCCTCCTCCTCCAAAGCTATGCGGTTCTCCCGGTG  Raphanus raphanistrum subsp. landra
EW722507       --> TTATCAAGCACTCCAACCTCCTCCTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus sativus cv Early Scarlet Globe
EW722598       --> TTATCAAGCACTCCAACCTCCTCCTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus sativus cv Early Scarlet Globe
EW726830       --> TTATCAAGCACTCCAACCTCCTCCTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus sativus cv Early Scarlet Globe
EX756070       --> TTATCAAGCACTCCAGCCTCCTCCTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> TTATCAAGCACTCCAGCCTCCTACTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus sativus cv GSK3-1
FY428128       --> TTATCAAGCACTCCAGCCTCCTACTCCAAAGCTATGCGGCTCTCCCGGTG  Raphanus sativus cv GSK3-1
FD534890       --> TTATCAAGCACTCCAGCCTCCTCCTCCAAAGCTATGCGGTTCTCCCGGTG  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               251    -    301
UN16958        --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> GTCCATCTATCACAGCACCAAGAATCAAGCTTAGAGACGGAAGATACTTG
EW722507       --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
EW722598       --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
EW726830       --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
EX756070       --> GTCCATCTATCACAGCACCAAGAATCAAGCTTAGAGACGGAAGACACTTG
FY452246       --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
FY428128       --> GTCCATCTATCACAGCCCCAAGAATTAAGCTTAGAGACGGAAGACACTTG
FD534890       --> GTCCATCTATCACAGCACCAAGAATCAAGCTTAGAGACGGAAGATACTTG
EW725363       --> ..................................................
FD535967       --> ..................................................

               301    -    351
UN16958        --> GCTTACAAGGAGCACGGTGTTCCCAGAGATGAAGCTGCCCGTAAAATCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> GCTTACAAAGAGCACGGTGTTCCCAGAGATAAAGCTGCCCGTAAAATCGT  Raphanus raphanistrum subsp. landra
EW722507       --> GCTTACAAGGAGCACGGTGTTCCCAGACATGAAGCTTCCCGTAAAATCGT  Raphanus sativus cv Early Scarlet Globe
EW722598       --> GCTTACAAGGAGCACGGTGTTCCCAGACATGAAGCTTCCCGTAAAATCGT  Raphanus sativus cv Early Scarlet Globe
EW726830       --> GCTTACAAGGAGCACGGTGTTCCCAGACATGAAGCTTCCCGTAAAATCGT  Raphanus sativus cv Early Scarlet Globe
EX756070       --> GCTTACAAGGAGCATGGTGTTCCCAGAGATGAAGCTGCCCGTAAAATCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> GCTTACAAGGAGCATGGTGTTCCTAGAGATGAAGCTGCCCGTAAAATCGT  Raphanus sativus cv GSK3-1
FY428128       --> GCTTACAAGGAGCATGGTGTTCCTAGAGATGAAGCTGCCCGTAAAATCGT  Raphanus sativus cv GSK3-1
FD534890       --> GCTTACAAAGAGCACGGTGTTCCCAGAGATAAAGCTGCCCGTAAAATCGT  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN16958        --> CTTTGTTCATGGATCAGATAGTTGCAGGCACGACAATGCCTTCGCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> CTTTGTCCATGGATCAGATAGTTGCAGGCACGACAATGCCTTCGCAGCTC  Raphanus raphanistrum subsp. landra
EW722507       --> CTTTGTTCATGGATCAGATAGTTGCAGGCACGACAAT-CCTTCGCAGCTC  Raphanus sativus cv Early Scarlet Globe
EW722598       --> CTTTGTTCATGGATCAGATAGTTGCAGGCACGACAAT-CCTTCGCAGCTC  Raphanus sativus cv Early Scarlet Globe
EW726830       --> CTTTGTTCATGGATCAGATAGTTGCAGGCACGACAAT-CCTTCGCAGCTC  Raphanus sativus cv Early Scarlet Globe
EX756070       --> CGTTGTCCATGGATCAGATAGTTGCAGGCACGATAACGCTTTCGCAGCTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> TTTTGTTCATGGATCAGATAGTTGCAGGCACGACAATGCCTTCGCAGCTC  Raphanus sativus cv GSK3-1
FY428128       --> TTTTGTTCATGGATCAGATAGTTGCAGGCACGACAATGCCTTCGCAGCTC  Raphanus sativus cv GSK3-1
FD534890       --> CTTTGTCCATGGATCAGATAGTTGCAGGCACGACAATGCCTTCGCAGCTC  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN16958        --> TATTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> TATTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCATTT  Raphanus raphanistrum subsp. landra
EW722507       --> TATTATCACCGGATATTAAGGAGGGACTAGGCGTGTATATGGTTTCGTTT  Raphanus sativus cv Early Scarlet Globe
EW722598       --> TATTATCACCGGATATTAAGGAGGGACTAGGCGTGTATATGGTTTCGTTT  Raphanus sativus cv Early Scarlet Globe
EW726830       --> TATTATCACCGGATATTAAGGAGGGACTAGGCGTGTATATGGTTTCGTTT  Raphanus sativus cv Early Scarlet Globe
EX756070       --> TACTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> TATTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCGTTT  Raphanus sativus cv GSK3-1
FY428128       --> TATTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCGTTT  Raphanus sativus cv GSK3-1
FD534890       --> TATTATCACCGGATATTAAGGAGGGACTAGGTGTGTATATGGTTTCATTT  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN16958        --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
EW722507       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
EW722598       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
EW726830       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
EX756070       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
FY452246       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
FY428128       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
FD534890       --> GATAGACCTGGTTATGGAGAGAGTGATGCTGACCCAAACCGTACTCCCAA
EW725363       --> ..................................................
FD535967       --> ..................................................

               501    -    551
UN16958        --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................
EW729442       <-- ..................................................
FD530697       <-- ..................................................
EW727150       <-- ..................................................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAA
EW722507       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
EW722598       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
EW726830       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
EX756070       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGCCTAGGAA
FY452246       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
FY428128       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAT
FD534890       --> AAGCTTGGCTTTGGATATAGAGGAGCTTGCTGATCAGTTGAGTCTAGGAA
EW725363       --> ..................................................
FD535967       --> ..................................................

               551    -    601
UN16958        --> CTAAGTTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> CTAAGTTCTATGTGATAGGGTACTCTATGGGTGGGCAAGCTACATGGGCA  Raphanus raphanistrum subsp. landra
EW722507       --> CTAAATTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA  Raphanus sativus cv Early Scarlet Globe
EW722598       --> CTAAATTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA  Raphanus sativus cv Early Scarlet Globe
EW726830       --> CTAAATTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA  Raphanus sativus cv Early Scarlet Globe
EX756070       --> CTAAATTCTGTGTGATAGGGTACTCTATGGGTGGACAAGCTATATGGGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> CTAAGTTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA  Raphanus sativus cv GSK3-1
FY428128       --> CTAAGTTCTATGTGATAGGGTACTCTATGGGTGGACAAGCTACATGGGCA  Raphanus sativus cv GSK3-1
FD534890       --> CTAAGTTCTATGTGATAGGGTACTCTATGGGTGGGCAAGCTACATGGGCA  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN16958        --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCGCTTGTAACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- .......AATACATTCCTCACAGGTTAGCTGGAGCAGCGCTGGTAACACC  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- ............caTCCTCACAG-TTAGCTGGAGCAGCGCTGGTAACACC  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- .............................................ACACC  Raphanus raphanistrum subsp. maritimus
EW727150       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCACTTGTAACACC  Raphanus raphanistrum subsp. landra
EW722507       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCGCTGGTAACACC  Raphanus sativus cv Early Scarlet Globe
EW722598       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCGCTGGTAACACC  Raphanus sativus cv Early Scarlet Globe
EW726830       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCGCTGGTAACACC  Raphanus sativus cv Early Scarlet Globe
EX756070       --> TGTCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCACTTGTAACACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCACTTGTAACACC  Raphanus sativus cv GSK3-1
FY428128       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCACTTGTAACACC  Raphanus sativus cv GSK3-1
FD534890       --> TGCCTTAAATACATTCCTCACAGGTTAGCTGGAGCAGCACTTGTAACACC  Raphanus raphanistrum subsp. maritimus
EW725363       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN16958        --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW729442       <-- AGTGGTGA-CTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
FD530697       <-- AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW727150       <-- ....................AGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW730746       <-- .................................AGAGATGTCAAAGGAAG
FD935245       <-- ..................................................
EV567576       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW722507       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW722598       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW726830       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTC........
EX756070       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAG-AAG
FY452246       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
FY428128       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
FD534890       --> AGTGGTGAACTATTGGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
EW725363       --> ..............GGTGGAAGAGCTTTCCATCAGAGATGTCAAAGGAAG
FD535967       --> ..................................................

               701    -    751
UN16958        --> CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- CTTATGACAAACAACCTAGAAACGACCAATGGGCGGTTCGT-TTGCACAC  Raphanus raphanistrum subsp. maritimus
EW727150       <-- CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ..................................................  Raphanus sativus var. oleiformis
EV567576       --> CTTATGACAAACAACCTAGAAACGACCAATGGGCGGTTCGTGTTGCACAC  Raphanus raphanistrum subsp. landra
EW722507       --> CTTATGACAAACAACCGAGAAACGACCAGTGGG.................  Raphanus sativus cv Early Scarlet Globe
EW722598       --> CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
EW726830       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX756070       --> CTTATGACAAACAACCGAGAAACGACCAATGG..................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv GSK3-1
FY428128       --> CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv GSK3-1
FD534890       --> CTTATGACAAACAACCTAGAAACGACCAATGGGCGGTTCGT-TTGCACAC  Raphanus raphanistrum subsp. maritimus
EW725363       --> CTTATGACAAACAACCGAGAAACGACCAGTGGGCGGTTCGTGTCGCACAC  Raphanus sativus cv Early Scarlet Globe
FD535967       --> ....................................TTCGTGTTGCACAC  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN16958        --> TACGCTCCTTGGCTCACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TACGCTCCTTGGCATACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- TACGCTCCTTGGCATACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- TACGCTCCTTGGCTCACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus raphanistrum subsp. maritimus
EW727150       <-- TACGCTCCTTGGCATACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- TACGCTCCTTGGCTTACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- ...........................AACTCTCAGAAGTGGTTCCTTGG  Raphanus sativus var. oleiformis
EV567576       --> TACGCTCCTTGGTTCACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus raphanistrum subsp. landra
EW722507       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722598       --> TACGCTCCTTGGCATACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
EW726830       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX756070       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> TACGCTCCTTGGCTCACTCATTGGTGGAACTCTCAGAAGTGGTTCCTTGG  Raphanus sativus cv GSK3-1
FY428128       --> TACGCTCCTTGGCTCACTCATTGGTGGAACTCTCAGAAGTGGTTCCTTGG  Raphanus sativus cv GSK3-1
FD534890       --> TACGCTCCTTGGCTCACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus raphanistrum subsp. maritimus
EW725363       --> TACGCTCCTTGGCTTACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus sativus cv Early Scarlet Globe
FD535967       --> TACGCTCCTTGGCTCACTCATTGGTGGAACTCACAGAAGTGGTTCCTTGG  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN16958        --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
EW729442       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
FD530697       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
EW727150       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
EW730746       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
FD935245       <-- GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
EV567576       --> GTCGAGTGTTGTGACGAGAAACC...........................
EW722507       --> ..................................................
EW722598       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAA...........
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
FY428128       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
FD534890       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
EW725363       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG
FD535967       --> GTCGAGTGTTGTGACGAGAAACCTCGGTTTGTTGTCTAAATCTGACAAAG

               851    -    901
UN16958        --> AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
EW729442       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
FD530697       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
EW727150       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
EW730746       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
FD935245       <-- AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
FY428128       --> AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
FD534890       --> AGATCCTCTTCAAGATTGGTGCTGCAGG-AGACCACATGAG-CAGAAATA
EW725363       --> AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA
FD535967       --> AGATCCTCTTCAAGATTGGTGCTGCAGGGAGACCACATGAGGCAGAAATA

               901    -    951
UN16958        --> AGACAGCAAGGAACACATGAGACGGTGATCCGTGACATGATTGTTGGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- AGACAGCAAGGAACACATGAGACAGTGATCCGTGACATGATTGTTGGGTT  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- AGACAGCAAGGAACACATGAGACAGTGATCCGTGACATGATTGTTGGGTT  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- AGACAGCAAGGAACACATGAGACGGTGATCCGTGACATGATTGTTGGGTT  Raphanus raphanistrum subsp. maritimus
EW727150       <-- AGACAGCAAGGAACACATGAGACAGTGATCCGTGACATGATTGTTGGGTT  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- AGACAGCAAGGAACACATGAGACAGTGATCCGTGACATGATTGTTGGGTT  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- AGACAGCAAGGAACGCACGAGACGGTGATTCGTGACATGATTGTTGGGTT  Raphanus sativus var. oleiformis
EV567576       --> ..................................................  Raphanus raphanistrum subsp. landra
EW722507       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722598       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726830       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX756070       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> AGACAGCAAGGAACgcacg...............................  Raphanus sativus cv GSK3-1
FY428128       --> AGACAGCAAGGAACGCACGAGACGGTGATCCGTGACATGATTG.......  Raphanus sativus cv GSK3-1
FD534890       --> AGACAGCAAGGAACACATGAGACGGTGATCCGTGACATGATTGTTGGGTT  Raphanus raphanistrum subsp. maritimus
EW725363       --> AGACAGCAAGGAACACATGAGACAGTGATCCGTGACATGATTGTTGGGTT  Raphanus sativus cv Early Scarlet Globe
FD535967       --> AGACAGCAAGGAACACATGAGACGGTGATCCGTGACATGATTGTTGGGTT  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN16958        --> TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTGTTCCCTAACA  Raphanus raphanistrum subsp. maritimus
EW727150       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTGTTCCCTAACA  Raphanus sativus var. oleiformis
EV567576       --> ..................................................  Raphanus raphanistrum subsp. landra
EW722507       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722598       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726830       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX756070       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> ..................................................  Raphanus sativus cv GSK3-1
FY428128       --> ..................................................  Raphanus sativus cv GSK3-1
FD534890       --> TGGAAAATGGGAGT-CGATCCAATGGAACTC...................  Raphanus raphanistrum subsp. maritimus
EW725363       --> TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTATTCCCTAACA  Raphanus sativus cv Early Scarlet Globe
FD535967       --> TGGAAAATGGGAGTTCGATCCAATGGAACTCGAGAACTTGTTCCCTAACA  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN16958        --> ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGGCT
EW729442       <-- ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGGCT
FD530697       <-- ACGAGGGAACGGTTCACTTGTGGCAGGGAGATGACGGCGCTCTTGTGCCT
EW727150       <-- ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGGCT
EW730746       <-- ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGCCT
FD935245       <-- ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTCCCT
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> ACGAGGGATCGGTTCACTTGTGGCAGGGAGATGACGACGCTCTTGTGCCT
FD535967       --> ACGAGGGAACGGTTCACTTGTGGCAGGGAGATGACGACACTCTTGTGCCT

               1051   -   1101
UN16958        --> GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA  Raphanus sativus cv Early Scarlet Globe
EW729442       <-- GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA  Raphanus sativus cv Early Scarlet Globe
FD530697       <-- GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCATGGGTTCGTTACCA  Raphanus raphanistrum subsp. maritimus
EW727150       <-- GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA  Raphanus sativus cv Early Scarlet Globe
EW730746       <-- GTGACTTTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA  Raphanus sativus cv Early Scarlet Globe
FD935245       <-- GTGACTTTACAACGTTACGTTGCTAAGAAGCTGCCATGGGTTCGCTACCA  Raphanus sativus var. oleiformis
EV567576       --> ..................................................  Raphanus raphanistrum subsp. landra
EW722507       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722598       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW726830       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX756070       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452246       --> ..................................................  Raphanus sativus cv GSK3-1
FY428128       --> ..................................................  Raphanus sativus cv GSK3-1
FD534890       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW725363       --> GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCGTGGGTTCGTTACCA  Raphanus sativus cv Early Scarlet Globe
FD535967       --> GTGACTCTACAACGTTACGTTGCTAAGAAGCTGCCATGGGTTCGTTACCA  Raphanus raphanistrum subsp. maritimus

               1101   -   1151
UN16958        --> TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
EW729442       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
FD530697       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTT
EW727150       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
EW730746       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
FD935245       <-- TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG
FD535967       --> TGAGATTCCTGGAGCAGGGCATATGTTCCCGCTTTTTCCTGGTATGGTTG

               1151   -   1201
UN16958        --> ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA
EW729442       <-- ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA
FD530697       <-- ATAACATCGTTAATACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA
EW727150       <-- ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA
EW730746       <-- ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGGACTAAACA
FD935245       <-- ATAACATCGTTAAGACGCTCTTAACCAGCGAAGAAGTCAAGAACTAAACA
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGGACTAAACA
FD535967       --> ATAACATCGTTAAGACGCTATTAACCAGCGAAGAAGCCAAGAACTAAACA

               1201   -   1251
UN16958        --> AAA-GACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- AAA-GACTCGTGTTCTTTCTCGGAATGATGGCTGATTTGGTTATGTGACA
EW729442       <-- AAA-GACTCGTGTTCTTTCTCGGAATGATGGCTGATTTGGTTATGTGACA
FD530697       <-- AAA-GACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA
EW727150       <-- AAA-GACTCGTGTTCTTTCTCGGAATGATGGCTGATTTGGTTATGTGACA
EW730746       <-- AAA-GACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA
FD935245       <-- AAAAGACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> AAA-GACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA
FD535967       --> AAA-GACTCGTGTTCTTTCTCAGAATGATGGCTGATTTGGTTATGTGACA

               1251   -   1301
UN16958        --> TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
EW729442       <-- TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
FD530697       <-- TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
EW727150       <-- TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
EW730746       <-- TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
FD935245       <-- TGATTTGCTATGAATTGTTTTGAAACGGCTAGAGAGATTTCATGAATATC
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC
FD535967       --> TGATTTGCTATAAATTGTTTTGAAACGATTAGAGAGATTTCATGAATATC

               1301   -   1351
UN16958        --> TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
EW729442       <-- TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
FD530697       <-- TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
EW727150       <-- TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
EW730746       <-- TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
FD935245       <-- TCAAATTTGTTAGTAGgg................................
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> TCAAATTTGTTAGTAGATCTTTTGATTACTACTAATATACTTT-GTTGGT
FD535967       --> TCAA-TTTGTTAGTAGATCTTTTGATTACTACTAATATACTTTTGTTGGT

               1351   -   1401
UN16958        --> GGTCCTCTTTTTTTTTTTT--AGTGTGATTTATTGATGAATACTACTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- GGTCCTCTTTTTTTTT--T--AGTGTGATTTATTGATGAATACTACTTAC
EW729442       <-- GGTCCTCTTTTTTTTT--T--AGTGTGATTTATTGATGAATACTACTTAC
FD530697       <-- GGccg.............................................
EW727150       <-- GGTCCTCTTTTTTTTT--T--AGTGTGATTTATTGATGAATACTACTTAC
EW730746       <-- GGTCCTCTTTTTTTTTTTTTTAGTGTGATTTATTG...............
FD935245       <-- ..................................................
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> GGTCCTCTTTTTTTTTTTT--AGT..........................
FD535967       --> GGTCTTCTTTTTTTTTTTTTTAGTGTGATTTATTGATGA-TACTACTTAC

               1401   -   1451
UN16958        --> TGTTTGTCACACCAATATTCTTCCTAAGCTATATAACTTGGAATGTGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW727450       <-- TGTTTGTCACACCAATATTCTTCCTAAGCTAT..................
EW729442       <-- TGTTTG............................................
FD530697       <-- ..................................................
EW727150       <-- TGTTTGTCACACCAATATTCTTCCTAAGCTAT..................
EW730746       <-- ..................................................
FD935245       <-- ..................................................
EV567576       --> ..................................................
EW722507       --> ..................................................
EW722598       --> ..................................................
EW726830       --> ..................................................
EX756070       --> ..................................................
FY452246       --> ..................................................
FY428128       --> ..................................................
FD534890       --> ..................................................
EW725363       --> ..................................................
FD535967       --> TGTTTGTCACACCAATATTCTTC-TAAGCTATATAACTTGGAATGTGACC

               1451   -   1501
UN16958        --> G
                   ~
EW727450       <-- .
EW729442       <-- .
FD530697       <-- .
EW727150       <-- .
EW730746       <-- .
FD935245       <-- .
EV567576       --> .
EW722507       --> .
EW722598       --> .
EW726830       --> .
EX756070       --> .
FY452246       --> .
FY428128       --> .
FD534890       --> .
EW725363       --> .
FD535967       --> G