Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN16969

               1      -     51
UN16969        --> GGAAACTTTCCCAAGCAACCTTCTTCCTTCTTCTTCTCCTCTGTCGCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> GGAAACTTTCCCAAGCAACCTTCTTCCTTCTTCTTCTCCTCTGTCGCCGT
EY933031       --> .................ggaagcaaCCTTCTTCTTCTCCTCTGTCGCCGT
FD939362       --> .................ggaagcaaCCTTCTTCTTCTCCTCTGTCGCCGT
EW724231       --> ..................................................
FD535851       --> ..................................................

               51     -    101
UN16969        --> TGTTGCTTAGCCATCGTCGTGCCAATGGCAAAGAAGAAGGTGAAAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> TGTTGCTTCGCCATCGTCGTGCCAATGGCAAAGAAGAAGGTGAAAGTTGT
EY933031       --> TGTTGCTTAGCCATCGTCGTGCCAATGGCAAAGAAGAAGGTGAAAGTTGT
FD939362       --> TGTTGCTTAGCCATCGTCGTGCCAATGGCAAAGAAGAAGGTGAAAGTTGT
EW724231       --> .....................CCAATGGCAAAGAAGAAGGTGAAAGTTGT
FD535851       --> ..................................................

               101    -    151
UN16969        --> TGATTCTGGATTGGATACTATGAAGGCAATGGTTCATCAGCACGGTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> TGATTCTGGATTGGATACTATGAAGGCAATGGTTCATCAGCACGGTGAAT
EY933031       --> TGATTCTGGATTGGATACTATGAAGGCAATGGTTCATCAGCACGGTGAAT
FD939362       --> TGATTCTGGATTGGATACTATGAAGGCAATGGTTCATCAGCACGGTGAAT
EW724231       --> TGATTCTGGATTGGATACTATGAAGGCAATGGTTCATCAGCACGGTGAAT
FD535851       --> ..................................................

               151    -    201
UN16969        --> TTTTCGATACAATGGTGGAGCTCATCCCTGCGAGATTCTACTTACCTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> TTTTCGATACAATGGTGGAGCTCATCCCTGCGAGATTCTACTTACCTGAT
EY933031       --> TTTTCGATACAATGGTGGAGCTCATCCCTGCGAGATTCTACTTACCTGAT
FD939362       --> TTTTCGATACAATGGTGGAGCTCATCCCTGCGAGATTCTACTTACCTGAT
EW724231       --> TTTTCGATACAATGGTGGAGCTCATCCCTGCGAGATTCTACTTACCTGAT
FD535851       --> ..................................................

               201    -    251
UN16969        --> GAGACGGAGAGGAAGTGGTTTCCAGGTCTTAGCAAGGCTCAAAAAGCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> GAGACGGAGCGGAAGTGGTTTCCAGGTCTTAGCAAGGCTCAAAAAGCTAG
EY933031       --> GAGACGGAGAGGAAGTGGTTTCCAGGTCTTAGCAAGGCTCAAAAAGCTAG
FD939362       --> GAGACGGAGAGGAAGTGGTTTCCAGGTCTTAGCAAGGCTCAAAAAGCTAG
EW724231       --> GAGACGGAGAGGAAGTGGTTTCCAGGTCTTAGCAAGGCTCAAAAAGCTAG
FD535851       --> ..................................................

               251    -    301
UN16969        --> AGCCAAGAAGAAAACAACCGAGAATCTAAAGAAAGCAAGGAGGGACAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> AGCCAAGAAGAAAACAACCGAGAATCTAAAGAAAGCAAGGAGGGACAGGT
EY933031       --> AGCCAAGAAGAAAACAACCGAGAATCTAAAGAAAGCAAGGAGGGACAGGT
FD939362       --> AGCCAAGAAGAAAACAACCGAGAATCTAAAGAAAGCAAGGAGG-ACAGGT
EW724231       --> AGCCAAGAAGAAAACAACCGAGAATCTAAAGAAAGCAAGGAGGGACAGGT
FD535851       --> ..................................................

               301    -    351
UN16969        --> TGGATCCTGAGAAGTCTGCTTTGACTACTCTTGATCTGCTGAAACGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> TGGATCCTGAGAAGTCTGCTTTGACTACTCTTGATTTGCTGAAACGGAAG
EY933031       --> TGGATCCTGAGAAGTCTGCTTTGACTACTCTTGATCTGCTGAAACGGAAG
FD939362       --> TGGATCCTGAGAAGTCTGCTTTGACTACTCTTGATCTGCTGAAACGGAAG
EW724231       --> TGGATCCTGAGAAGTCTGCTTTGACTACTCTTGATCTGCTGAAACGGAAG
FD535851       --> ..................................................

               351    -    401
UN16969        --> ATAGAGAAGGAGAAGAAGTTGAGTCATGAGATTGCTGCTG---ATGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ..................................................
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> ATAGAAAGGGAGAAGAAGTTGAGTCATGAGATTGCTGCTGCTGATGATGA
EY933031       --> ATAGAGAAGGAGAAGAAGTTGAGTCATGAGATTGCTGCTG---ATGATGA
FD939362       --> ATAGAGAAGGAGAAGAAGTTGAGTCATGAGATTGCTGCTG---ATGATGA
EW724231       --> ATAGAGAAGGAGAAGAAGTTGAGTCATGAGATTGCTGCTG---ATGATGA
FD535851       --> ..................................................

               401    -    451
UN16969        --> TGATGGCAGTGAGGAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- .....GCAGTGAGGAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
EX906846       <-- ..................................................
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> TGATGGCAGTGAGGAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
EY933031       --> TGATGGCAGTGAAGAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
FD939362       --> TG---GCAG----GAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
EW724231       --> TGATGGCAGTGAGGAGGAAGCTGATAACAAGAAGGCTAAGAGTGATTCGG
FD535851       --> ..................................................

               451    -    501
UN16969        --> CTACTTACGAGGAGCTGAGGCAACGTCTCC-ACCGCAAGATTGATGCGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- CTACTTACGAGGAGCTGAGGCAACGTCTCCCCCCGCAAGATTGATGCGCT
EX906846       <-- .........................TCTCC-ACCGCAAGATTGATGCGCT
EY928611       <-- ..................................................
FD531426       <-- ..................................................
EX902618       --> CTACTTACGAGGAGCTGAGGCAACTTCTCC-ACCGCAAGATTGATGCGCT
EY933031       --> CTACTTACGAGGAGCTGAGGCAACGTCTCC-ACCGCAAGATTGATGCGCT
FD939362       --> CTACTTACGAGGAGCTGAGGTAACGTCTCC-ACCGCAAGATTGATGCGCT
EW724231       --> CTACTTACGAGGAGCTGAGGCAACGTCTCC-ACCGCAAGATTGATGCGCT
FD535851       --> ..................................................

               501    -    551
UN16969        --> TAAAGGTGGTCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- TAAAGGTGGTCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
EX906846       <-- TAAAGGTGGCCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
EY928611       <-- .....GTGGTCGTGGGGGT-CAGATAGACCGAGAAGTCATGAAAAGAGGA
FD531426       <-- .......................................gGAAAAGAGGA
EX902618       --> TAAAGGTGGCCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
EY933031       --> TAAAGGTGGTCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
FD939362       --> TAAAGGTGGTCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
EW724231       --> TAAAGGTGGTCGTGGGGGTTCAGATAGACCGAGAAGTCATGAAAAGAGGA
FD535851       --> .......................................gGAAAAGAGGA

               551    -    601
UN16969        --> AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
EX906846       <-- AGAAGATTGTGC-TAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
EY928611       <-- AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAGGACTGTGGAGGAG
FD531426       <-- AGAAGATTGTGCCTAATAAGAGAAAGAGAGAGGAGAAGACTGTGGAGGAG
EX902618       --> AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
EY933031       --> AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAGGACTGT.......
FD939362       --> AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
EW724231       --> AGAAGATTGTGCCTAATAAGAGAAAGAGGGAGGAGAAGACTGTGGAGGAG
FD535851       --> AGAAGATTGTGCCTAATAAGAGAAAGAGAGAGGAGAAGACTGTGGAGGAG

               601    -    651
UN16969        --> GAGAGTAAGATTAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GAGAGTAAG-TTAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGAAGAGG  Raphanus sativus cv Early Scarlet Globe
EX906846       <-- GAGAGTAAGATT-GCAGATAAAGGTAAGGGTAAGTTGGATGTGGAAGAGG  Raphanus sativus cv Rat-Tail Radish #3870
EY928611       <-- GAGAGTAAG-TTAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGAAGAGG  Raphanus sativus var. oleiformis
FD531426       <-- GAGAGTAAGATT-GCAGATAAAGGTAAGGCTAAGTTGGATGTGGAAGAGG  Raphanus raphanistrum subsp. maritimus
EX902618       --> GAGAGTAAGATT-GCAGATAA.............................  Raphanus sativus cv Rat-Tail Radish #3870
EY933031       --> ..................................................  Raphanus sativus var. oleiformis
FD939362       --> GAGAGTAAG-TTAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGA.....  Raphanus sativus var. oleiformis
EW724231       --> GAGAGTAAG-TTAGCAGATAAAGGTAAGGGTAAGTTGGATGTGGAAGAGG  Raphanus sativus cv Early Scarlet Globe
FD535851       --> GAGAGTAAGATT-GCAGATAAAGGTAAGGCTAAGTTGGATGTGGAAGAGG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN16969        --> CTGCTAAGGACCTTACGTACGGTTACGTCAAGATCGATGACGATGAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- CTGCTAAGGACCTTACGTACGGTTACGTCAAGATCGATGACGATGAGGAA
EX906846       <-- CTGCTAAGGACCTTACGTACGGTTACGTCAAGATCGATGACGATGAGGAA
EY928611       <-- CTGCTAAGGACCTTACGTACGGTTACGTCAAGATCGATGACGATGAGGAA
FD531426       <-- CTGCTAAGGACCTGACGTACGGTTACGTCAAGATCGATGACGATGAGGAA
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> CTGCTAAGGACCTTACGTACGGTTACGTCAAGATCGATGACGATGAG-AA
FD535851       --> CTGCTAAGGACCTGACGTACGGTTACGTCAAGATCGATGACGATGAGGAA

               701    -    751
UN16969        --> CACGGAAAGGGTA---AGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- CACGGAAAGGGTA---AGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTTGA  Raphanus sativus cv Early Scarlet Globe
EX906846       <-- CACGGAAAGGGTACAAAGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTCGA  Raphanus sativus cv Rat-Tail Radish #3870
EY928611       <-- CACGGAAAGGGTA---AGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTTGA  Raphanus sativus var. oleiformis
FD531426       <-- CACGGAAAGGGTA---AGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTCGA  Raphanus raphanistrum subsp. maritimus
EX902618       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY933031       --> ..................................................  Raphanus sativus var. oleiformis
FD939362       --> ..................................................  Raphanus sativus var. oleiformis
EW724231       --> CACGGAAAGGGTA---AGAAGCGGAG-CTTTCCAAGTCTAGAGAGCTTGA  Raphanus sativus cv Early Scarlet Globe
FD535851       --> CACGGAAAGGGTA---AGAAGCGGAGGCTTTCCAAGTCTAGAGAGCTCGA  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN16969        --> AAGGGCTTTGAAGCTAGAGGCTGCAAAGAAGGATCCAGAGAAAGGTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- AAGGGCTTTGAAGCTAGAGGCTGCAAAGAAGGATCCAGAGAAAGGTGAAG
EX906846       <-- AAGGGCTTCGAAGCTAGAGGCTGCAAAGAAGGATCCGGAGAAAGGTGAAG
EY928611       <-- AAGGGCTTTGAAGCTAGAGGCTGCAAAGAAGGATCCAGAGAAAGGTGAAG
FD531426       <-- AAGGGCTTTGAAGCTAGAGGCTGCAAAGAAGGATCCAGAGAAAGGCGAAG
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> AAGGGCTTTGAAGCTAGAG-CTGCAAAGAAG-ATCCAGAGAA........
FD535851       --> AAGGGCTTTGAAGCTAGAGGCTGCAAAGAAGGATCCAGAGAAAGGCGAAG

               801    -    851
UN16969        --> TGATCGCGAAGAAACACTCTTGGCAGGCGGCTACAAGCAGAGCAGCTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- TGATCGCGAAGAAACACTCTTGGCAGGCGGCTACAAGCAGAGCAGCTGGT
EX906846       <-- TGATCGCGAAGAAGCACTCTTGGCAGGCGGCTACGAGCAGAGCAGCTGGT
EY928611       <-- TGATCGCGAAGAAACACTCTTGGCAGGCGGCTACAAGCAGAGCAGCTGGT
FD531426       <-- TGATAGCGAAGAAACACTCTTGGCAGGCGGCTACAAGCAGAGCAGCTGGT
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> TGATAGCGAAGAAACACTCTTGGCAGGCGGCTACAAGCAGAGCAGCTGGT

               851    -    901
UN16969        --> ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA
EX906846       <-- ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA
EY928611       <-- ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA
FD531426       <-- ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> ATCAAGGTCCACGACGATCCGAAGCTACTGAAGCAGAGCATCCACAAGGA

               901    -    951
UN16969        --> GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG
EX906846       <-- GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG
EY928611       <-- GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG
FD531426       <-- GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> GAAGAAGAGGCAGGAGAAGAACGCAGAGAAGTGGAAGGAGAGAGTTGAAG

               951    -   1001
UN16969        --> GGCAGCAGAAGGTTAGAGTTGAGAAGCAACAGAAGAGATCAGGGAACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GGCAGCAGAAGGTTAGAGTTGAGAAGCAACAGAAGAGATCAGGGAACATT
EX906846       <-- GGCAGCAGAAGGTTAGAGTTGAGAAGCAGCAGAAGAGATCAGGGAACATT
EY928611       <-- GGCAGCAGAAGGTTAGAGTTGAGAAGCAACAGAAGAGATCAGGGAACATT
FD531426       <-- GGCAGCAGAAGGTTAGAGTTGAGAAGCAACAGAAGAGATCAGGGAACATT
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> GGCAGCAGAAGGTTAGAGTTGAGAAGCAACAGAAGAGATCAGGGAACATT

               1001   -   1051
UN16969        --> GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA
EX906846       <-- GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA
EY928611       <-- GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA
FD531426       <-- GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> GCGGAGAGGATTGAGCAGAATAAGATGAGGAAGATCGCTAAGAGGGAGAA

               1051   -   1101
UN16969        --> GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAAGGGGTTATCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAAGGGGTTATCAATG
EX906846       <-- GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAGGGGGTTATCAATG
EY928611       <-- GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAAGGGGTTATCAATG
FD531426       <-- GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAAGGGGTTATCAATG
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> GAAGCTCCTTCGCCCTGGCTTTGAAGGTCGTAAAGAAGGGGTTATCAATG

               1101   -   1151
UN16969        --> ATGGCAAGTAAAAAA-CTCAAATTCTTCCAAAGATGTGATGATCATCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- ATGGCAAGTAAAAAAACTCAAATTCTTCCAAAGATGTGATGATCATCATC
EX906846       <-- ATGGCAAGTAAAAAT-CTCAAATTCTTCCAAAGATGTGATCATCATCATC
EY928611       <-- ATGGCAAGTAAAAAAACACAAATTCTTCCAAAGATGTGATGATCATCATC
FD531426       <-- ATGGCAAGTAAAAA--CTCAAATTCTTCCAAAGATGTGATGATCATCATC
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> ATGGCAAGTAAAAA--CTCAAATTCTTCCAAAGATGTGATGATCATCATC

               1151   -   1201
UN16969        --> TCAAAGGCTGTGAAGAGCATCTTTTGCTGTTTGGGGAATTTTCGTGTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- TCAAAGGCTGTGAAGAGCATCTTTTGCTGTTTTGGGAATTTTCGTGTAGT
EX906846       <-- TCAAAGGCTGTGGAGAGCATCTTTTGCTGTTTTGGTAATTTTCGTGTAGT
EY928611       <-- TCAAAGGCTGTGAAGAGCATCTTTTGCTGTTCGGGGAATTTTCGTGTAGT
FD531426       <-- TCAAAGGCTGTGAAGAGCATCTTTTGCTGTTTGGGGAATTTTCGTGTAGT
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> TCAAAGGCTGTGAAGAGCATCTTTTGCTGTTTGGGGAATTTTCGTGTAGT

               1201   -   1251
UN16969        --> TCAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- TCAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA
EX906846       <-- CAAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA
EY928611       <-- TCAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA
FD531426       <-- TCAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> TCAAGTCCCTAGCAATATCAGTTATGTTTTTTAGTTCGTTTTGTTTTGCA

               1251   -   1301
UN16969        --> GTTTGCAGACTTTATCAAATGTTTGTTACACAATGTGTT-CCTTAAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- GTTTGCAGACTTTATCAAATGTTTTTTACACAATGTGTT-CCTTAAAGTT
EX906846       <-- GTTTGCAGACTTTATCAAATGTTTGTTACACAATGTGTT-CCTTCAAGTT
EY928611       <-- GTTTGCAGACTTTATCAAATGTTTTTTACACAATGTGTT-CCTTAAAGTT
FD531426       <-- GTTTGCAGACTTTATCAGATGTTTGTTACACAATGTGTTTCCTTAAAGTT
EX902618       --> ..................................................
EY933031       --> ..................................................
FD939362       --> ..................................................
EW724231       --> ..................................................
FD535851       --> GTTTGCAGACTTTATCAGATGTTTGTTACACAATGTGTTTCCTTAAAGTT

               1301   -   1351
UN16969        --> AATGGTCTTTATCAAGTTTTGATATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW728827       <-- AATGGTCTTTATC..............
EX906846       <-- AATGGTCTT-ATCAAGTTTTGATATAG
EY928611       <-- AATGGTCTTTATCAAGTTTTG......
FD531426       <-- AATGGTCTTTATCAt............
EX902618       --> ...........................
EY933031       --> ...........................
FD939362       --> ...........................
EW724231       --> ...........................
FD535851       --> AATGGTCTTTATCAtaaaaaaa.....