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Alignment for radish unigene UN16975

               1      -     51
UN16975        --> GGAAAGACAAAAAACTCTCTTTCGGCTTCCTTCTTGTCTGAATCATCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> GGAAAGACAAAAAACTCTCTTTCGGCTTCCTTCTTGTCTGAATCATCTTG
FD941526       --> GGAAAGACAAAAAACTCTCTTTCGGCTTCCTTCTTGTCTGAATCATCTTG
EX902277       --> ..............................TTCTTGTCTGAATCATCTTG
EY896814       --> .................................ggGTCTGAATCATTTTG
EX890621       --> ..........................................ggATCTTG
EY937545       --> ...............................................TTG
EY941672       --> ...............................................TTG
FD979591       --> ...............................................ggG
EW733770       --> ..................................................
EV551873       --> ..................................................

               51     -    101
UN16975        --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
FD941526       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EX902277       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EY896814       --> AGAGCAGTAGAAAACGATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EX890621       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EY937545       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EY941672       --> AGAGCAGTAGAAAA-GATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
FD979591       --> AGAGCAGTAGAAAA-AATATGGAAGGATTAATCAAAGGTTTAGCCGATGT
EW733770       --> ..................................................
EV551873       --> ..................................................

               101    -    151
UN16975        --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
FD941526       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
EX902277       --> TGCTTTCGGAGGAGACGAACGCCGCGGAGGAGATGATCAAAGGGACGAGA
EY896814       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
EX890621       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
EY937545       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
EY941672       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
FD979591       --> TGCTTTCGGAGGAGACGAACGTCGCGGAGGAGATGATCAAAGGGACGAGA
EW733770       --> ..................................................
EV551873       --> ..................................................

               151    -    201
UN16975        --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
FD941526       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
EX902277       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
EY896814       --> GACCCAGATCGACTTGGGCTAATGTGGTTTCCGGTGAGGACGATGATCAT
EX890621       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
EY937545       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
EY941672       --> GACCCCGATCCACTTGGGCTAATGTGGTTTCTGGTGAGGACGATGATCAT
FD979591       --> GACCCAGATCCACTTGGGCTAATGTGGTTTCCGGTGAGGACGATGATCAT
EW733770       --> ..........gACTTGGGCTAATGTGGTTTCCGGTGAGGACGATGATCAT
EV551873       --> ..................................................

               201    -    251
UN16975        --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
FD941526       --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
EX902277       --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
EY896814       --> AACCGCGCGGGAGGATCGGTGCCGTCGCCGCATGATCGACGCCAAAATCC
EX890621       --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
EY937545       --> AACCGCGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
EY941672       --> AACCACGCGGGAGGATCGGTGCCATCGCCGCATGATCGACGCCAAAATCC
FD979591       --> AACCGCGCGGGAGGATCTGTGCCATCGCCACATGATCGTCGCCAAAATCC
EW733770       --> AACCGTGCGGGAGGATCGGTGCCATCGCCGCATGATCGCCGCCAAAATCC
EV551873       --> ..................................................

               251    -    301
UN16975        --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
FD941526       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EX902277       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EY896814       --> AGAGGATAATCAATGGGAGAGGAAGGGAGAAAGAATGTCCACAAGACATT
EX890621       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EY937545       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EY941672       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
FD979591       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EW733770       --> AGAGGAGAATCAATGGGAGAAGAAGGGAGAAAGGATGTCCACAAGACATT
EV551873       --> ..................................................

               301    -    351
UN16975        --> CACATCAGGAAGAGAATGAGTATGCTGCTCAAGTAACCGAGCAACAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY898773       --> CACATAAGGAAGAGAATGAGTATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus raphanistrum subsp. maritimus
FD941526       --> CACATCAGGAAGAGAATGAGAATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus sativus var. oleiformis
EX902277       --> CACATCAGGAAGAGAATGAGTATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus sativus cv Rat-Tail Radish #3870
EY896814       --> CACATCAGGAAGAGAATGAGTATGCGGCTCAAGTAACCGAGCAACAAGAC  Raphanus raphanistrum subsp. maritimus
EX890621       --> CACATCAGGAAGAGAATGAGAATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus sativus var. oleiformis
EY937545       --> CACATCAGGAAGAGAATGAGAATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus sativus cv Early Scarlet Globe
EY941672       --> CACATCAGGAAGAGAATGAGAATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus sativus cv Early Scarlet Globe
FD979591       --> CACATAAGGAAGAGAATGAGTATGCTGCTCAAGTAACCGAGCAACAAGAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW733770       --> CACATCAGGAAGAGAATGAGTATGCTGCTCAAGTAACCGACCAACAAGAC  Raphanus sativus cv Rat-Tail Radish #3870
EV551873       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN16975        --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
FD941526       --> TCCTCGGAGAGCCAGAAACAAGACAACGACGGTTGGGAAACCGTGGGGAA
EX902277       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGAAA
EY896814       --> TCCTCGGAGAACCAGAAAGAAGACAATGACGGTTGGGAAACCGTGGGGAA
EX890621       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
EY937545       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
EY941672       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
FD979591       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
EW733770       --> TCCTCGGAGAGCCAGAAAGAAGACAACGACGGTTGGGAAACCGTGGGGAA
EV551873       --> ..................................................

               401    -    451
UN16975        --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> AAAGAAACCTTCAAGACAACCACATAAGGTCAAGAAGGAGCAGTGGCAAG
FD941526       --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCA-G
EX902277       --> AAAGAAACCTTCAAGACAACCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EY896814       --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EX890621       --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EY937545       --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EY941672       --> AAAGAAACCTTCAGGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
FD979591       --> AA-GAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EW733770       --> AAAGAAACCTTCAAGACAATCACATAAGGTCAAGAAGGAGCAGTGGCAAG
EV551873       --> ..................................................

               451    -    501
UN16975        --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> GCTACAAATGCCCAGCGAGCGAACAACACTACTCAGACGACTC.......
FD941526       --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
EX902277       --> GCTACAAATGCCCAGCGAGCGAACAACACTACTCAGACGACTCTGAAACA
EY896814       --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
EX890621       --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
EY937545       --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
EY941672       --> GCTACAAATGCCCAGCGAGTGAACAACACTACTCAGACGACTCTGAAACA
FD979591       --> GCTACAAATGCCCAGCGAGCGAACAACACTACTCAGACGACTCTGAAACA
EW733770       --> GCTACAAATGCCCAGCGAGCGAACAACACTACTCAGACGACTCTGAAACA
EV551873       --> ..................................................

               501    -    551
UN16975        --> CACGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGTCTCTCAGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> CAAGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGTCTCTCAGAAGC
EX902277       --> CACGGAGACCTAGAGCCCTCAGAGCTAGAGCTCTCAGGTCTCTCAGAAGC
EY896814       --> CACGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGTCTCTCAGAAGC
EX890621       --> CAAGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGTCTCTCAGAAGC
EY937545       --> CAAGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGCCTCTCAGAAGC
EY941672       --> CAAGGAGACCTAGAGCCCTCACAGCTAGAGCTCTCAGGTCTCTCAGAAGC
FD979591       --> CACGGAGACCTAGAGCCCTCAGAGCTAGAGCTCTCAGGTCTCTCAGAAGC
EW733770       --> CACGGAGACCTAGAGCCCTCACAGCTAGAGCTTTCAGGTCTCTCAGAAGC
EV551873       --> ..................................................

               551    -    601
UN16975        --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
EX902277       --> TTGCAACAAACTCT-AGAGCTCGACTCGAACTGCCTCGTCCC-GGAAACG
EY896814       --> TTGCAACAAACTCTGGGAGCTCGACTCAAACCGCCTCGTCCCCGGAAACG
EX890621       --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
EY937545       --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
EY941672       --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
FD979591       --> TTGCAACAAACTCTGGGAGCTCGACTCGAACCGCCTCGTCCCCGGAAACG
EW733770       --> TTGCAACAAACTCTGGGAGCTCGACTCTAACCGCCTCGTCCCCGGAAACG
EV551873       --> ..................................................

               601    -    651
UN16975        --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
EX902277       --> ATTACCAGATCGACTGCGGAGATGGGAAACGAGTCCACGAGAGATCAGAC
EY896814       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
EX890621       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
EY937545       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
EY941672       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCAGAC
FD979591       --> ATTACCAGATCGACTGCGGAGACGGGAAAAGAGTCCACGAGAGATCAGAC
EW733770       --> ATTACCAGATCGACTGCGGAGATGGGAAAAGAGTCCACGAGAGATCGGAC
EV551873       --> ......gGATCGACTGCGGAGACGGGAAAAGAGTCCACGAGAGATCAGAC

               651    -    701
UN16975        --> ATGGCTGAAGGGTTACTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ATGGCT............................................
EX902277       --> ATGGCTGAAGGGTTACTCTTCTCTTGGGTGAGCGAGGAG-TCTTCAGAAA
EY896814       --> ATGGCTGAAGGGCTACTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA
EX890621       --> ATGGCTGAAGGGTTACTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA
EY937545       --> ATGGCT............................................
EY941672       --> ATGGCT............................................
FD979591       --> ATGGCTGAAGGGTTGCTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA
EW733770       --> ATGGCTGAAGGGCTACTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA
EV551873       --> ATGGCTGAAGGGTTGCTCTTCTCTTGGGTGAGCGACGAGGTCTTCAGAAA

               701    -    751
UN16975        --> ACCGACGTTCGCTAGGTTCTGCTCGTTGCTCGACAACTACA-CCCGCACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ACCGACGTTCGCTAG-TTCTGCTCGTTGCTCGACA-CTACA-CCCGCACG
EY896814       --> ACCGACGTTCGCTAGGTTCTGCTCGTTGCTCGACAACTACA-CCCGCA..
EX890621       --> ACCGACGTTCGCTAGGTTC...............................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ACCGACGTTCGCTAGGTTCTGCTCGTTGCTCGACAACTACAACCCGCACG
EW733770       --> ACCGACTTTCGCTAG-TTCTGCTCTCTGCTCGACAACTACA-CCCGCACG
EV551873       --> ACCGACGTTCGCTAGGTTCTGCTCGTTGCTCGACAACTACAACCCGCACG

               751    -    801
UN16975        --> AAG-TTACAAAGAAGTTGTCACCGAAGAAGAGAGGCAAGAGCAGGCGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> AAG-TTACAAAGAAGTTGTCACCGAAGAAGAGAGGCAAGA..........
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> AAG-TTACAAAGAAGTTGCCACCCAAGAAGAGAGGCAAGAGCAG-CGGCT
EW733770       --> AAG-TTACAAAGAAGTTGTCACCGAAGA-GAGAGGCAg............
EV551873       --> AAGGTTACAAAGAAGTTGTCACCCAAGAAGAGAGGCAAGAGCAGGCGGCT

               801    -    851
UN16975        --> TTCATCGAAGAGATCAGCAGAACCGCTGTTGTTAAGTACCTTCACAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> TTCATCGAAGAGATCAGCAGAACCGCTGTTGTTAAGTAC...........
EW733770       --> ..................................................
EV551873       --> TTCATCGAAGAGATCAGCAGAACCGCTGTTGTTAAGTACCTTCACAAGTA

               851    -    901
UN16975        --> CCTTGCGATCAAGGACGTTGCTCCTGGGAGCTACCAAGAGTTCAAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> CCTTGCGATCAAGGACGTTGCTCCTGGGAGCTACCAAGAGTTCAAGAGAA

               901    -    951
UN16975        --> TGCTGACCAGTCTCTGGTTCGATCTCTATGGACGTGGAGGCACCTCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ..................................................
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> TGCTGACCAGTCTCTGGTTCGATCTCTATGGACGTGGAGGCACCTCTGGC

               951    -   1001
UN16975        --> TCCTCTTCTGCCTTTGAACATGTCTTTGTAGGTGAGATCAAACAGTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- .....................................TCAAACAGTGTGG
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> TCCTCTTCTGCCTTTGAACATGTCTTTGTAGGTGAGATCAAACAGTGTGG

               1001   -   1051
UN16975        --> TGGAGAACAAGTCTCTGGCTTCCATAACTGGCTTCAGTTCTACCTAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- TGGAGAACAAGTCTCTGGCTTCCATAACTGGCTTCAGTTCTACCTAGAAG
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> TGGAGAACAAGTCTCTGGCTTCCATAACTGGCTTCAGTTCTACCTAGAAG

               1051   -   1101
UN16975        --> AAGCCAAAGGATCAGTTGATTACCAAGGGTATATATTCCCCCGTCGTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- AAGCCAAAGGATCAGTTGATTACCAAGGGTATATATTCCCCCGTCGTCTT
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> AAGCCAAAGGATCAGTTGATTACCAAGGGTATATATTCCCCCGTCGTCGT

               1101   -   1151
UN16975        --> GGTGAAATTCCTGATTCAGAGACTCAGCTGCTAACGATCCAGTTCGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- GGTGAAATTCCTGATTCAGAGACTCAGCTGCTAACGATCCAGTTCGAGTG
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> GGTGAAATTCCTGATTCAGAGACTCAGCTGCTAACGATCCAGTTCGAGTG

               1151   -   1201
UN16975        --> GAACGGTGTTTTGAAATCAGTGTCGAGTACACTAGTTGGAGTTAGTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- GAACGGTGTTTTGAAATCAGTGTCGAGTACACTAGTTGGAGTTAGTCCAG
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> GAACGGTGTTTTGAAATCAGTGTCGAGTACACTAGTTGGAGTTAGTCCAG

               1201   -   1251
UN16975        --> AGTTCGAGTTGGCTCTGTACACGATGTGTTTCTTCATGGGAAGGGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- AGTTCGAGTTGGCTCTGTACACGATGTGTTTCTTCATGGGAAGGGAAGAC
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> AGTTCGAGTTGGCTCTGTACACGATGTGTTTCTTCATGGGAAGGGAAGAC

               1251   -   1301
UN16975        --> AACCACATTCAGTTGGGTCCATACTGTGTCAATGTCAAATGCTACCGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- AACCACATTCAGTTGGGTCCATACAGTGTCAATGTCAAATGCTACCGACT
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> AACCACATTCAGTTGGGTCCATACTGTGCCAATGTCAAATGCTACCGACT

               1301   -   1351
UN16975        --> TGGCAACAACCGTATTGGCTCAGCTTTCCCCATTGCAGAATCTTGATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- TGGCAACAACCGTATTGGCTCAGCTTTCCCCATTGCAGAATCTTGATAAC
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> TGGCAACAACCGTATTGGCTCAGCTTTCCCCATTGCAGAATCTTGATAAC

               1351   -   1401
UN16975        --> CTCTCTCTCTCTTTCTTGATGGGTCCTTAATCAAAAAAAAACATTACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- CTCTCTCTCTCTTTCTTGATGGGTCCTTAATCAAAAAAAAACATTACAAA
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> CTCTCTCTCTCTTTCTTGATGGGTCCTTAATCAAAAAAAAACATTACAAA

               1401   -   1451
UN16975        --> ATATCTATGCGTTGAGCAGTACTCTATTGGATTATTATTATTGTTGTCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- ATATCTATGCGTTGAGCAGTACTCTATTGGATTATTATTATTGTTGTCAG
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> -TATCTATGCGTTGAGCAGTACTCTATTGAATTA................

               1451   -   1501
UN16975        --> AGATCTTTCTGTCTACCTGTTAGACTTATAGAAATATCTTGTTTTGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD975607       <-- AGATCTTTCTGTCTACCTGTTAGACTTATAGAAATATCTTGTTTTGATAT
EY898773       --> ..................................................
FD941526       --> ..................................................
EX902277       --> ..................................................
EY896814       --> ..................................................
EX890621       --> ..................................................
EY937545       --> ..................................................
EY941672       --> ..................................................
FD979591       --> ..................................................
EW733770       --> ..................................................
EV551873       --> ..................................................

               1501   -   1551
UN16975        --> TTCCTTGGATATTTTATGCG
                   ~~~~~~~~~~~~~~~~~~~~
FD975607       <-- TTCCTTGGATATTTTATGCG
EY898773       --> ....................
FD941526       --> ....................
EX902277       --> ....................
EY896814       --> ....................
EX890621       --> ....................
EY937545       --> ....................
EY941672       --> ....................
FD979591       --> ....................
EW733770       --> ....................
EV551873       --> ....................