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Alignment for radish unigene UN16995

               1      -     51
UN16995        --> TTTTTTTCCTCCCATCATCACTAGTCACGACCAAA--CACAAAAAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- .......CCTCCCATCATCACTAGTCACGACCAAA--CACAAAAAGGAAG
FD983329       <-- ........................TCACGACCAAA--CCCAAAAAGGAAG
EV573485       <-- ..................................A--CACAAAAAGGAAG
FY441544       <-- ..................................................
EX768292       <-- ..................................................
FD952932       <-- ..................................................
EV541727       <-- ..................................................
EV571392       <-- ..................................................
FD530157       <-- ..................................................
FD566390       <-- ..................................................
EX764359       --> TTTTTTTCCTCCCATCATCACTAGTCACGACCAAAAACACAAAAAGGAAG
FD534148       --> .TTTTTTCCTCCCATCATAACTAGTCACGACCAAA--TACAAAAAGGAAG
FD562568       --> .TTTTTTCCTCCCATCATCACTAGTCACGACCAAA--CACAAAAAGGAAG
FD577103       --> .TTTTTTCCTTCCATCATCACTAGTCACGACCAAA--TCCAAAAAGGGAG
FD957186       --> .TTTTTTCCTTCCATCATCACTAGTCACGACCAAA--CCCAAAAAGGGAG
EV539152       --> .......CCTCCCATCATCACTAGTCACGACCAAA--CACAAAAAGGAAG
EV568849       --> .......CCTCCCATCATCACTAGTCACGACCAAA--CACAAAAAGGAAG
FD987244       --> ...........ggATCATAACTAGTCACGACCAAA--CCCAAAAAGGAAG
EV537518       --> ...............................................AAG
FY441218       --> ..................................................
EV566213       --> ..................................................
FD562499       --> ..................................................

               51     -    101
UN16995        --> AAA-CATATCATATAGAGAGAGA----AAGAAGCACACCAGTGGCAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- AAA-CATATCATATAGAGAGAGA----AAGAAACACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- AAA-CATATTATATAGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus raphanistrum subsp. landra
EV573485       <-- AAAACATATCATATAGAGAGAGAGAAAAAGAAGCACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. landra
FY441544       <-- .........tATATAGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus sativus cv GSK3-1
EX768292       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD530157       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566390       <-- ..................................................  Raphanus sativus var. oleiformis
EX764359       --> AAA-CATATCATATAGAGAGAGG----AAGAAGCACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> AAA-CATATCATATAGAGAGAGA----AAGAAGCACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. maritimus
FD562568       --> AAA-CATATCATATAGAGAGAGA----AAGAAGCACACCAGTGGCAGAAC  Raphanus sativus var. oleiformis
FD577103       --> AAA-CATATTATATAGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> AAA-CATATTATATAGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> AAA-CATATCATATAGAGAGAGA----AAGAAACACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> AAAACATATCATATAGAGAGAGAGAAAAAGAAGCACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. landra
FD987244       --> AAA-CATATTATATAGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus raphanistrum subsp. landra
EV537518       --> AAA-CATATCATATAGTGAGAGA----AAGAAACACACCAGTGGCAGAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> ..............AGAGAGAGA----AAGAAGCATACCAGTGGCAGAAC  Raphanus sativus cv GSK3-1
EV566213       --> ..................................................  Raphanus raphanistrum subsp. landra
FD562499       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN16995        --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. landra
EV573485       <-- CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGCAAAGA  Raphanus raphanistrum subsp. landra
FY441544       <-- CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus sativus cv GSK3-1
EX768292       <-- ....AATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD530157       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566390       <-- ..................................................  Raphanus sativus var. oleiformis
EX764359       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGCAAAGA  Raphanus raphanistrum subsp. maritimus
FD562568       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGATGGCAAAGA  Raphanus sativus var. oleiformis
FD577103       --> CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGCAAAGA  Raphanus raphanistrum subsp. landra
FD987244       --> CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. landra
EV537518       --> CGTAAATAAAAGATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> CGTAAATAAAAAATGTCTAAAGATTGCGGCAACCACGGTGGTGGAAAAGA  Raphanus sativus cv GSK3-1
EV566213       --> ..................................................  Raphanus raphanistrum subsp. landra
FD562499       --> ..................................................  Raphanus sativus var. oleiformis

               151    -    201
UN16995        --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD983329       <-- AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV573485       <-- AGCAGCCGTCCGGCGAATCTGCGGCGCCGTTATCGCCTTCATCATAATAG
FY441544       <-- AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EX768292       <-- AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD952932       <-- ..................CTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV541727       <-- ....................GCGGCGCCGTGATCGCCTTCATCATAATAG
EV571392       <-- ..................................................
FD530157       <-- ..................................................
FD566390       <-- ..................................................
EX764359       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD534148       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD562568       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD577103       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FD957186       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV539152       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV568849       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTTATCGCCTTCATCATAATAG
FD987244       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV537518       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
FY441218       --> AGCAGCCGTCCGGCGAATCTGCGGCGCCGTGATCGCCTTCATCATAATAG
EV566213       --> ..................................................
FD562499       --> ..................................................

               201    -    251
UN16995        --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus raphanistrum subsp. landra
EV573485       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACAAAGCCA  Raphanus raphanistrum subsp. landra
FY441544       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus sativus cv GSK3-1
EX768292       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACGAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAATTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD530157       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD566390       <-- ..................................................  Raphanus sativus var. oleiformis
EX764359       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACGAAGCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACGAAGCTA  Raphanus raphanistrum subsp. maritimus
FD562568       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACGAAGCCA  Raphanus sativus var. oleiformis
FD577103       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACAAAGCCA  Raphanus raphanistrum subsp. landra
FD987244       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus raphanistrum subsp. landra
EV537518       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> TTCTAATCACCATCTTCCTAGTTTGGGTCATACTCAGGCCAACTAAACCA  Raphanus sativus cv GSK3-1
EV566213       --> ..................................................  Raphanus raphanistrum subsp. landra
FD562499       --> ..................................................  Raphanus sativus var. oleiformis

               251    -    301
UN16995        --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- AGATTCATCCTCCAAGACGCCACCGTTTTCGCCCTCAACCTCTCGCAACC
FD983329       <-- AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EV573485       <-- AGATTCATTCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FY441544       <-- AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EX768292       <-- AGATTCATCCTCCAAGACGCCACCGTCTTCTCCTTCAACCTCTCGCAACC
FD952932       <-- AGATTCAGCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EV541727       <-- AGATTCATCCTCCAAGACGCCACCGTTTTCGCCTTCAACCTCTCGCAACC
EV571392       <-- .......ggCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD530157       <-- ............................TCGCCTTCAACCTCTCGCAACC
FD566390       <-- ..................................................
EX764359       --> AGATTCATCCTCCAAGACGCCACCGTCTTCTCCTTCAACCTCTCGCAACC
FD534148       --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD562568       --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD577103       --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD957186       --> AGATTCAGCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EV539152       --> AGATTCATCCTCCAAGACGCCACCGTTTTCGCCCTCAACCTCTCGCAACC
EV568849       --> AGATTCATTCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD987244       --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EV537518       --> AGATTCATCCTCCAAGACGCCACCGTTTTCGCCTTCAACCTCTCGCAACC
FY441218       --> AGATTCATCCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
EV566213       --> .......ggCTCCAAGACGCCACCGTCTTCGCCTTCAACCTCTCGCAACC
FD562499       --> ..................................................

               301    -    351
UN16995        --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- AAACCTCCTCACCACAAACTTCCAGATCACATTCGCATCTCGTAACCCTA
FD983329       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV573485       <-- AAACCTCCTCACCTCAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FY441544       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EX768292       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD952932       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV541727       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV571392       <-- AAACCTCCTCACCTCAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD530157       <-- AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD566390       <-- ..................................................
EX764359       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD534148       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD562568       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD577103       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD957186       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV539152       --> AAACCTCCTCACCACAAACTTCCAGATCACATTCGCATCTCGTAACCCTA
EV568849       --> AAACCTCCTCACCTCAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD987244       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV537518       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FY441218       --> AAACCTCCTCACCACAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
EV566213       --> AAACCTCCTCACCTCAAACTTTCAGATCACATTCGCATCTCGTAACCCTA
FD562499       --> ...........................gACATTCGCATCTCGTAACCCTA

               351    -    401
UN16995        --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD983329       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
EV573485       <-- ACTCCAAGATCGGTATTTACTACGACCGTCTCCACGTTTACGCTACGTAC
FY441544       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTTTACGCTACGTAC
EX768292       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD952932       <-- ACTCCAAGATCGGTATTTACTACGACCGTCTCCACGTTTACGCTACGTAC
EV541727       <-- ACTCCAAGATCGGTATTTACTACGACCGTCTCCACGTTTACGCTACGTAC
EV571392       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTTTACGCTACGTAC
FD530157       <-- ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTTTACGCTGCGTAC
FD566390       <-- ........................................CGCTACGTAC
EX764359       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD534148       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTGCGTAC
FD562568       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD577103       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD957186       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGC.......
EV539152       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
EV568849       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD987244       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
EV537518       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FY441218       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
EV566213       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC
FD562499       --> ACTCCAAGATCGGTATCTACTACGACCGTCTCCACGTCTACGCTACGTAC

               401    -    451
UN16995        --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- CATAACCAGCAGATAACACTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD983329       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV573485       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FY441544       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EX768292       <-- CATAACC---AGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD952932       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV541727       <-- CATAACCAGCAGATAACACTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV571392       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD530157       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD566390       <-- CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EX764359       --> CATAACCAG---ATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD534148       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD562568       --> CACAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD577103       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD957186       --> ..................................................
EV539152       --> CATAACCAGCAGATAACACTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV568849       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD987244       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV537518       --> CATAACCAGCAGATAACACTCAGGACAGCAATCCCTCCGACGTACCAAGG
FY441218       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
EV566213       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG
FD562499       --> CATAACCAGCAGATAACTCTCAGGACAGCAATCCCTCCGACGTACCAAGG

               451    -    501
UN16995        --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD983329       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV573485       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FY441544       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EX768292       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD952932       <-- GCATAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV541727       <-- GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV571392       <-- GCACAAAGAAGACAACGTCTGGTCTCTGTTTGTGTACGGAACCGCTGTTC
FD530157       <-- GCATAAAGAAGACAACGTCTGGTCTCCGTCCGTGTACGGAACCGCTGTTC
FD566390       <-- GCACAAAGAAGACAACGTCCGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EX764359       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD534148       --> GCATAAAGAAGACAACGTCTGGTCTCCGTCCGTGTACGGAACCGCTGTTC
FD562568       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD577103       --> GCATAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD957186       --> ..................................................
EV539152       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV568849       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FD987244       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV537518       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
FY441218       --> GCACAAAGAAGACAACGTCTGGTCTCCGTTTGTGTACGGAACCGCTGTTC
EV566213       --> GCACAAAGAAGACAACGTCTGGTCTCTGTTTGTGTACGGAACCGCTGTTC
FD562499       --> GCACAAAGAAGACAACGTCCGGTCTCCGTTTGTGTACGGAACCGCTGTTC

               501    -    551
UN16995        --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAACAAGGTCATGGA  Raphanus raphanistrum subsp. landra
EV573485       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGGAGACGAGCAAAGTCATGGA  Raphanus raphanistrum subsp. landra
FY441544       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAAGTCATGGA  Raphanus sativus cv GSK3-1
EX768292       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGGAGACGAGCAAAGTCATGGA  Raphanus raphanistrum subsp. landra
FD530157       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. maritimus
FD566390       <-- CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAACAAGGTCATGGA  Raphanus sativus var. oleiformis
EX764359       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. maritimus
FD562568       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAAGTCATGGA  Raphanus sativus var. oleiformis
FD577103       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAGCAAGGTCATGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> CGATCGCACCGTACAACTCCGTCGCTTTGGGAGACGAGCAAAGTCATGGA  Raphanus raphanistrum subsp. landra
FD987244       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAACAAGGTCATGGA  Raphanus raphanistrum subsp. landra
EV537518       --> CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAGGTCATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> CGATCGCACCGTACAACTCCGTCGCTTTGGAAGACGAGCAAAGTCATGGA  Raphanus sativus cv GSK3-1
EV566213       --> CGATCGCACCGTACAACTCCGTCGCTTTGGGAGACGAGCAAAGTCATGGA  Raphanus raphanistrum subsp. landra
FD562499       --> CGATCGCACCGTACAACTCCGTCGCTTTGGCAGACGAACAAGGTCATGGA  Raphanus sativus var. oleiformis

               551    -    601
UN16995        --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGGGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
EV573485       <-- CTCGTTCGGTTGAT-A--TGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
FY441544       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus cv GSK3-1
EX768292       <-- CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
FD530157       <-- CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. maritimus
FD566390       <-- CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus var. oleiformis
EX764359       --> CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. maritimus
FD562568       --> CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus var. oleiformis
FD577103       --> CTAGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> CTCGTTCGGTTGAT-AT--GCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
FD987244       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGGGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
EV537518       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus cv GSK3-1
EV566213       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus raphanistrum subsp. landra
FD562499       --> CTCGTTCGGTTGATGATACGCGCCGATGGGCGCGTGAGATGGAAAGTAGG  Raphanus sativus var. oleiformis

               601    -    651
UN16995        --> GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
EV573485       <-- GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
FY441544       <-- GACGTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus cv GSK3-1
EX768292       <-- GACGTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCCGGCTGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
FD530157       <-- GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. maritimus
FD566390       <-- GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus var. oleiformis
EX764359       --> GACGTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCCGGCTGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. maritimus
FD562568       --> G-CGTTAATCACCGGAAA-TATCATATCCATGTTCGGTG...........  Raphanus sativus var. oleiformis
FD577103       --> GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
FD987244       --> GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
EV537518       --> GACGTTGATCACAGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> GACGTTGATCACCGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus cv GSK3-1
EV566213       --> GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus raphanistrum subsp. landra
FD562499       --> GACGTTGATCACTGGAAAATATCATATCCATGTTCGGTGTCCGGCTATCA  Raphanus sativus var. oleiformis

               651    -    701
UN16995        --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
EV573485       <-- TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
FY441544       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus sativus cv GSK3-1
EX768292       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGCCGGTGATAACGCCGTT  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
FD530157       <-- TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. maritimus
FD566390       <-- TCGATTTTGGGAACAAAGCTTTTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus sativus var. oleiformis
EX764359       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCG-TGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. maritimus
FD562568       --> ..................................................  Raphanus sativus var. oleiformis
FD577103       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
FD987244       --> TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
EV537518       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> TCGATCTTGGGAACAAAGCTGCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus sativus cv GSK3-1
EV566213       --> TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus raphanistrum subsp. landra
FD562499       --> TCGATCTTGGGAACAAAGCTTCTGGTGTTATTGTCGGTGATAACGCCGTT  Raphanus sativus var. oleiformis

               701    -    751
UN16995        --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD983329       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
EV573485       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FY441544       <-- AAGTATACGTTGATTACTAGATGCAGTGTGAACGTCTAGAACTTTGACGC
EX768292       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD952932       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
EV541727       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
EV571392       <-- AAGTATACGTTGATTACTAAATGCAGTGTTAACGTTTAGAACTTTGACGC
FD530157       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD566390       <-- AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
EX764359       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD534148       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD562568       --> ..................................................
FD577103       --> AAGTATACGTTGATTACTAAATGCAGTGTGA...................
FD957186       --> ..................................................
EV539152       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
EV568849       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FD987244       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGA-CTTTGACGC
EV537518       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC
FY441218       --> AAGTATACGTTGATTACTAGATGCAGTGTGAACGTCTAGAACTTTGACGC
EV566213       --> AAGTATACGTTGATTACTAAATGCAGTGTTAACGTTTAGAACTTTGACGC
FD562499       --> AAGTATACGTTGATTACTAAATGCAGTGTGAACGTTTAGAACTTTGACGC

               751    -    801
UN16995        --> CGTTAAGTTGCTACTATCTTCTTTTTGTTATTATTAT------ATA--A-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- CGTTAAGTTGCTACTATCTTCTTT---TTA-TATTAT------ATA--A-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD983329       <-- CGTTAAGTTGCTACTATCTACTTTTTGTTATTATTAT---TATATA--A-  Raphanus raphanistrum subsp. landra
EV573485       <-- CGTTAAGTTGCTTCTATCTTCTTTTTATTATTATTAT------ATA--AA  Raphanus raphanistrum subsp. landra
FY441544       <-- CGTTAAGTTGCTACTATCTTCTTTTTATTATTATTAT.............  Raphanus sativus cv GSK3-1
EX768292       <-- CGTTAAGTTGCTACTATCTTCTTT---TTATTATTAT------ATA--A-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD952932       <-- CGTTAAGTTGCTACTATCTACTTTTTGTTATTATTAT---TATATA--A-  Raphanus sativus cv Rat-Tail Radish #3870
EV541727       <-- CGTTAAGTTGCTACTATCTTCTTT---TTA-TATTAT------ATA--A-  Raphanus raphanistrum subsp. raphanistrum (MS)
EV571392       <-- CGTTAAGTTGCTTCTATCTTCTTTTTATTATTAT................  Raphanus raphanistrum subsp. landra
FD530157       <-- CGTTAAGTTGCTACTATCTACTTTTTGTTATTATTATTATTATATA--A-  Raphanus raphanistrum subsp. maritimus
FD566390       <-- CGTTAAGTTGCTACTATTTACTTTTTGTTATTATTAT------ATA--A-  Raphanus sativus var. oleiformis
EX764359       --> CGTTAAGTTGCTACTATCTTCTTTT-ATTATTATa...............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD534148       --> CGTTAAGTTGCTACTATCTACTTTTTGTTATTATTATtattatataatca  Raphanus raphanistrum subsp. maritimus
FD562568       --> ..................................................  Raphanus sativus var. oleiformis
FD577103       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD957186       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV539152       --> CGTTAAGTTGCTACTATCTTCTTTTT---A-TATTAT------ATA--A-  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568849       --> CGTTAAGTTGCTTCTATCTTCTTTTTATTATTATTAT------ATA--AA  Raphanus raphanistrum subsp. landra
FD987244       --> CGTTAAGTTGCTACTATCTACTTTT-GTTATTATTAT----TTATA--A-  Raphanus raphanistrum subsp. landra
EV537518       --> CGTTAAGTTGCTACTATCTTCTTTTT---A-TATTAT------ATA--A-  Raphanus raphanistrum subsp. raphanistrum (MS)
FY441218       --> CGTTAAGTTGCTACTATCTTCTTTTTATTATTATTAT------ATATAA-  Raphanus sativus cv GSK3-1
EV566213       --> CGTTAAGTTGCTTCTATCTTCTTTTTATTATTAT................  Raphanus raphanistrum subsp. landra
FD562499       --> CGTTAAGTTGCTACTATCTACTTTTTGTTATTATTAT------ATA--A-  Raphanus sativus var. oleiformis

               801    -    851
UN16995        --> -TCAAATCATTTTCTATTTAC-AAAA-CAAATTTTACCAAACTTCTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- -TCAAATCATTTTCTATTTAC.............................
FD983329       <-- -TCAAATCATTTTCT...................................
EV573485       <-- ATCAAATCATTTTCTATTT...............................
FY441544       <-- ..................................................
EX768292       <-- -TCAAATCATTTTCTATTTAC-AAgc........................
FD952932       <-- -TCAAATCA.........................................
EV541727       <-- -TCAAATCATTTTCTATTTAC-AAgc........................
EV571392       <-- ..................................................
FD530157       <-- -TCAAATCATTTTCTATTTAC.............................
FD566390       <-- -TCAAATCATTTTTTATTTACGAAAA-CAAATTTTACCAAACTTCTCCTT
EX764359       --> ..................................................
FD534148       --> ..................................................
FD562568       --> ..................................................
FD577103       --> ..................................................
FD957186       --> ..................................................
EV539152       --> -TCAAATCATTTTCTATTTAC.............................
EV568849       --> ATCAAATCATTTTCTAT.................................
FD987244       --> -TCAAATCATTTTCT...................................
EV537518       --> -TCAAATCATTTTCTATTTAC-A...........................
FY441218       --> -TCAAATCATTTTCTATTTAC-AAAAGCAAATTTTAC.............
EV566213       --> ..................................................
FD562499       --> -TCAAATCATTTTCTATTTACGAAAA-CAAATTTTACCAAACTTCTCCTT

               851    -    901
UN16995        --> CCCCCAGCAGGATAATAAGCTTATTGCTGATTACTATAGAATCATTACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- ..................................................
FD983329       <-- ..................................................
EV573485       <-- ..................................................
FY441544       <-- ..................................................
EX768292       <-- ..................................................
FD952932       <-- ..................................................
EV541727       <-- ..................................................
EV571392       <-- ..................................................
FD530157       <-- ..................................................
FD566390       <-- CCCCCAGCAGGATAATAAGCTTATTGCTGATTACTATAGAATCATTACAA
EX764359       --> ..................................................
FD534148       --> ..................................................
FD562568       --> ..................................................
FD577103       --> ..................................................
FD957186       --> ..................................................
EV539152       --> ..................................................
EV568849       --> ..................................................
FD987244       --> ..................................................
EV537518       --> ..................................................
FY441218       --> ..................................................
EV566213       --> ..................................................
FD562499       --> CCACCAGCAGGATAATAAGCTTATTGCTGATTACTATAGAATCATTACAA

               901    -    951
UN16995        --> ACACGAACGTTGAAATTATTGGGGGATTGGGTCTAGTTCTTTGTGCTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- ..................................................
FD983329       <-- ..................................................
EV573485       <-- ..................................................
FY441544       <-- ..................................................
EX768292       <-- ..................................................
FD952932       <-- ..................................................
EV541727       <-- ..................................................
EV571392       <-- ..................................................
FD530157       <-- ..................................................
FD566390       <-- ACACGAACGTTGAAATTATTGGGGGATTGGGTCTAGTTCTTTGTGCTTAT
EX764359       --> ..................................................
FD534148       --> ..................................................
FD562568       --> ..................................................
FD577103       --> ..................................................
FD957186       --> ..................................................
EV539152       --> ..................................................
EV568849       --> ..................................................
FD987244       --> ..................................................
EV537518       --> ..................................................
FY441218       --> ..................................................
EV566213       --> ..................................................
FD562499       --> ACACGAACGTTGAAATTATTGGCGGATTGGGTCTAGTTCTTTGTGCTTAT

               951    -   1001
UN16995        --> TTTGTACTTTCCTAATAAATTTACTGCTTCGCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543011       <-- ...................................
FD983329       <-- ...................................
EV573485       <-- ...................................
FY441544       <-- ...................................
EX768292       <-- ...................................
FD952932       <-- ...................................
EV541727       <-- ...................................
EV571392       <-- ...................................
FD530157       <-- ...................................
FD566390       <-- TTTGTACTTTCCTAATAAATTTACTGCTTCGCATT
EX764359       --> ...................................
FD534148       --> ...................................
FD562568       --> ...................................
FD577103       --> ...................................
FD957186       --> ...................................
EV539152       --> ...................................
EV568849       --> ...................................
FD987244       --> ...................................
EV537518       --> ...................................
FY441218       --> ...................................
EV566213       --> ...................................
FD562499       --> TTTGTACTTTCCTAATAAATTTACTGCTTCGCA..