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Alignment for radish unigene UN17000

               1      -     51
UN17000        --> AATATACCAAAGAAATAATTGTTCATGGATCATAGTCATTAAGCTGACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- AATATACCAAAGAAATAATTGTTCATGGATCATAGTCATTAAGCTGACTA
FD579120       <-- ..................................................
FD957173       <-- ..................................................
FD965147       <-- ..................................................
EV524878       <-- ..................................................
EV537560       <-- ..................................................
EV569568       <-- ..................................................
FD964650       <-- ..................................................
EX904540       <-- ..................................................
EY946682       <-- ..................................................
FD544281       <-- ..................................................
EX893195       --> AATATACCAAAGAAATAATTGTTCATGGATCATAGTCATTAAGCTGACTA
EX908425       --> ..................................................
FD583158       --> ..................................................
EY927821       --> ..................................................
FD952923       --> ..................................................
EV541757       --> ..................................................
EV574082       --> ..................................................
FD539929       --> ..................................................

               51     -    101
UN17000        --> ACCCTATATGGAGAGAGGAGACATAGATAATAACAATCACAAAAGTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- ACCCTATATGGAGAGAGGAGACATAGATAATAACAATCACAAAAGTCAAT
FD579120       <-- ............................AATAACAATCACAAAAGTCAAT
FD957173       <-- ...............................agCAATCACAAA-GTCAAT
FD965147       <-- .....................................CACAAAAGTCAAT
EV524878       <-- ..................................................
EV537560       <-- ..................................................
EV569568       <-- ..................................................
FD964650       <-- ..................................................
EX904540       <-- ..................................................
EY946682       <-- ..................................................
FD544281       <-- ..................................................
EX893195       --> ACCCTATATGGAGAGAGGAGACATAGATAATAACAATCACAAAAGTCAAT
EX908425       --> ........................gGATAATAACAATCACAAAAGTCAAT
FD583158       --> ............................AATAACAATCACAAAAGTCAAT
EY927821       --> ........................aaatctTAACAATCACAAAAGTCAAT
FD952923       --> ...............................agCAATCACAAA-GTCAAT
EV541757       --> ..................................................
EV574082       --> ..................................................
FD539929       --> ..................................................

               101    -    151
UN17000        --> ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus var. oleiformis
FD579120       <-- ATATTTTTTTT-GTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD957173       <-- ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD965147       <-- ATATTTTTTTT-GTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus raphanistrum subsp. maritimus
EV524878       <-- ....................AAGTTACAAATGAAAGCATATTAGACAATC  Raphanus raphanistrum subsp. maritimus
EV537560       <-- ....................AAGTTACAAATGAAAACATATTAGACAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569568       <-- ....................AAGTTACAAATGAAAGCATATTAGACAATC  Raphanus raphanistrum subsp. landra
FD964650       <-- ....................AAGTTACAAATGAAAGCATATTAGACAATC  Raphanus raphanistrum subsp. maritimus
EX904540       <-- .........................ttcaaaGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
EY946682       <-- ...................................GCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD544281       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893195       --> ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus var. oleiformis
EX908425       --> ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
FD583158       --> ATATTTTTTTT-GTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
EY927821       --> ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAACATATTAAACAATC  Raphanus sativus var. oleiformis
FD952923       --> ATATTTTTTTTTGTTTTCTTAAGTTACAAATGAAAGCATATTAGACAATC  Raphanus sativus cv Rat-Tail Radish #3870
EV541757       --> ....................AAGTTACAAATGAAAACATATTAGACAATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574082       --> ....................AAGTTACAAATGAAAGCATATTAGACAATC  Raphanus raphanistrum subsp. landra
FD539929       --> ....................AAGTTACAAATGAAAACATATTAGACAATC  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN17000        --> ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus var. oleiformis
FD579120       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTCAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD957173       <-- ACGCAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD965147       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. maritimus
EV524878       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAAGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. maritimus
EV537560       <-- ACACAATCAA-CACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569568       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. landra
FD964650       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. maritimus
EX904540       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
EY946682       <-- ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD544281       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893195       --> ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus var. oleiformis
EX908425       --> ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD583158       --> ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTCAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
EY927821       --> ACACAATCAA-CACATAGAAGCAGGAAAAAGTCAAGGTTAAAAGAGTTAT  Raphanus sativus var. oleiformis
FD952923       --> ACGCAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus sativus cv Rat-Tail Radish #3870
EV541757       --> ACACAATCAA-CACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574082       --> ACACAATCAAACACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. landra
FD539929       --> ACACAATCAA-CACATAGAAGCAGGAAAAAGTTAAGGTTAAGAGAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN17000        --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- TACACAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus sativus var. oleiformis
FD579120       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus sativus cv Rat-Tail Radish #3870
FD957173       <-- TACGCAACATATTATGCCAAATATTTATTCAAACGCACACACACACA---  Raphanus sativus cv Rat-Tail Radish #3870
FD965147       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus raphanistrum subsp. maritimus
EV524878       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus raphanistrum subsp. maritimus
EV537560       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA--C  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569568       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA--C  Raphanus raphanistrum subsp. landra
FD964650       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus raphanistrum subsp. maritimus
EX904540       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACACAC  Raphanus sativus cv Rat-Tail Radish #3870
EY946682       <-- TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD544281       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893195       --> TACACAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus sativus var. oleiformis
EX908425       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACACAC  Raphanus sativus cv Rat-Tail Radish #3870
FD583158       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus sativus cv Rat-Tail Radish #3870
EY927821       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA---  Raphanus sativus var. oleiformis
FD952923       --> TACGCAACATATTATGCCAAATATTTATTCAAACGCACACACACACA---  Raphanus sativus cv Rat-Tail Radish #3870
EV541757       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA--C  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574082       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA--C  Raphanus raphanistrum subsp. landra
FD539929       --> TACGCAACATATTATGCCAAATATTTATTCAAAC--ACACACACACA--C  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN17000        --> -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus var. oleiformis
FD579120       <-- -TATATCTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
FD957173       <-- -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
FD965147       <-- -TAT--CTCTTAACATTAAACACATTTTTCTCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. maritimus
EV524878       <-- -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. maritimus
EV537560       <-- ATAT--CTCTTAACATCAAACACATTTTCTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569568       <-- ATAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. landra
FD964650       <-- -TAT--CTCTTAACATTAAACACATTTTTCTCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. maritimus
EX904540       <-- ATAT--CTCTTAACATCAAATACATTTTTTCCCCCCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
EY946682       <-- ATAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
FD544281       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893195       --> -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus var. oleiformis
EX908425       --> ATAT--CTCTTAACATCAAATACATTTTTTCCCCCCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
FD583158       --> -TATATCTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
EY927821       --> -TAT--CTCTTAACATCAAACACATTTTTTCCCACCGATTTTCCTGCGTA  Raphanus sativus var. oleiformis
FD952923       --> -TAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGGATA  Raphanus sativus cv Rat-Tail Radish #3870
EV541757       --> ATAT--CTCTTAACATCAAACACATTTTCTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574082       --> ATAT--CTCTTAACATCAAATACATTTTTTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. landra
FD539929       --> ATAT--CTCTTAACATCAAACACATTTTCTCCCACCGGTTTTCCTGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN17000        --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD579120       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD957173       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD965147       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EV524878       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EV537560       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EV569568       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGCCCCCACAGCTACAG
FD964650       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EX904540       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EY946682       <-- CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD544281       <-- .................AATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EX893195       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EX908425       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD583158       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EY927821       --> CATGTGATTTACATCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
FD952923       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EV541757       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG
EV574082       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGCCCCCACAGCTACAG
FD539929       --> CATGTGATTTACACCACAATTAACAGCTGCAGCTGTCCCCACAGCTACAG

               351    -    401
UN17000        --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD579120       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD957173       <-- TTTGATACGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD965147       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTATCGCA
EV524878       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EV537560       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EV569568       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD964650       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTATCGCA
EX904540       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EY946682       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD544281       <-- TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EX893195       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EX908425       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD583158       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EY927821       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD952923       --> TTTGATACGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EV541757       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
EV574082       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA
FD539929       --> TTTGATCCGCAGCTGCAGTTGTCGCACTCCGTGTTGTAGTTCTTCTCGCA

               401    -    451
UN17000        --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD579120       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD957173       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD965147       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EV524878       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EV537560       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EV569568       <-- ACTttcaccacacac...................................
FD964650       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EX904540       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EY946682       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD544281       <-- ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EX893195       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EX908425       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD583158       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EY927821       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
FD952923       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EV541757       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC
EV574082       --> ACTttcaccacacac...................................
FD539929       --> ACTGCAAGAGTCGCCACATTTGCAACCGGAACCACATCCACAGTTAGAAC

               451    -    501
UN17000        --> CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus var. oleiformis
FD579120       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD957173       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD965147       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus raphanistrum subsp. maritimus
EV524878       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus raphanistrum subsp. maritimus
EV537560       <-- CTGCCATTCCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569568       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD964650       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus raphanistrum subsp. maritimus
EX904540       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY946682       <-- CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD544281       <-- CTGCCATTCCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893195       --> CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus var. oleiformis
EX908425       --> CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD583158       --> CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY927821       --> CTGCCATTGCTTCTCTTCTCTTTAATTTAAAGTTGTAGTTTGTTTGTTTT  Raphanus sativus var. oleiformis
FD952923       --> CTGCCATTGCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
EV541757       --> CTGCCATTCCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574082       --> ..................................................  Raphanus raphanistrum subsp. landra
FD539929       --> CTGCCATTCCTTCTCTTCCCTTTAATTTAAAGTTGTAGTTTGTTTGTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN17000        --> TCTTCTTTTTGATTGCTTTATGTGTTGTGTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX889471       <-- TCTTCTTTTTGATT..................
FD579120       <-- TCTTCTTTTTGATT..................
FD957173       <-- TCTTCTTTTTGATT..................
FD965147       <-- TCTTCTTTTgatt...................
EV524878       <-- TCTTCTTTTTGATTGCTTTATGTGTTcc....
EV537560       <-- TCTTCTTTTTGATT..................
EV569568       <-- ................................
FD964650       <-- TCTTCTTTTgatt...................
EX904540       <-- TCTTCTTTTTGATT..................
EY946682       <-- TCTTCTTTTTGATT..................
FD544281       <-- TCTTCTTTTTGATT..................
EX893195       --> TCTTCTTTTTGATT..................
EX908425       --> TCTTCTTTTTGATT..................
FD583158       --> TCTTCTTTTTGATT..................
EY927821       --> TCTTCTTTTTGATTGCTTTATGTGTTGTGTCC
FD952923       --> TCTTCTTTTTGATT..................
EV541757       --> TCTTCTTTTTGATT..................
EV574082       --> ................................
FD539929       --> TCTTCTTTTTGATT..................