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Alignment for radish unigene UN17019

               1      -     51
UN17019        --> ACGAATAAGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................TTCACTCACTTGATTAAACAAATCACACGATA
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> ACGAATAAGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
FD544922       --> ...AATAAGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
EX753870       --> .....TAAGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
FY440608       --> .......AGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
EV571863       --> .......cGAAAGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
FD985996       --> .........AAAGAGAGATTCACTCACTTGGTTAAACAAATCACACGATA
FD536970       --> ...........AGAGAGATTCACTCACTTGATTAAACAAATCACACGATA
FD547522       --> ............ggGAGATTCACTCACTTGATTAAACAAATCACACGATA
EX893895       --> ....................CACTCACTTGATTAAACAAATCGCACGATA
FY432466       --> ..................................................
EW719109       --> ..................................................

               51     -    101
UN17019        --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCAAAGAAACCTTAACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- CAAAGGAGACAA-AGTTAAGTTTCAATGTTTTCAAAGAAACCTTAAGCGA  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- ..................................................  Raphanus sativus var. oleiformis
FD961932       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW714907       <-- ..................................................  Raphanus sativus var. oleiformis
FD551670       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY445407       <-- ..................................................  Raphanus sativus cv GSK3-1
FD981453       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540469       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCAAAGAAACCTTAACCGA  Raphanus sativus cv Early Scarlet Globe
FD544922       --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCAAAGAAACCTTAACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCAAAGAAACCTTAACCGA  Raphanus raphanistrum subsp. maritimus
FY440608       --> CAAAGGAGACAA-AGTTAAGTTTCAATGTTTTCAAAGAAAC-TTAAGCGA  Raphanus sativus cv GSK3-1
EV571863       --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCGAAGAAACCTTAACCGA  Raphanus raphanistrum subsp. landra
FD985996       --> CAAAGGAGACAACAGTAAAGTTTCAATGTTTTCGAAGAAACCTTAACCGA  Raphanus raphanistrum subsp. landra
FD536970       --> CAAAGTAGACAACAGTAAAGTTTCAATGTTTTCAAAGAAACCTTAAGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> CAAAGGAGACAACAGCAAAGTTTCAATGTTTTCAAAGAAACCTTAACCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> CAAAGGAGACAA-AGTTAAGTTTCAATGTTTTCAAAGAAACCTTAAGCGA  Raphanus sativus var. oleiformis
FY432466       --> .........gaaaAGTTAAGTTTCAATGTTTTCAAAGAAAC-TTAAGCGA  Raphanus sativus cv GSK3-1
EW719109       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN17019        --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- CACTTTTCCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAGCAA
FD948149       <-- ..............CCCATCTACTTACATGGATAAGAAGAAACCAAACAA
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
FD544922       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
EX753870       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
FY440608       --> CACTTT-CTTCTTGCCCATCTACTTACATGGAGAAGAAGAAACCAAACAA
EV571863       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
FD985996       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
FD536970       --> CACTTT-CCTCTTGCCCATCTACTTACATGGAGAAGAAGAAACCAAACAA
FD547522       --> CACTTT-CCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
EX893895       --> CACTTTTCCTCTTGCCCATCTACTTACATGGATAAGAAGAAACCAAACAA
FY432466       --> CACTTT-CTTCTTGCCCATCTACTTACATGGAGAAGAAGAAACCAAACAA
EW719109       --> ..................................................

               151    -    201
UN17019        --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ACTAACCATTACATAAACTTTTACCATCCCTA--ATACTACTACCCAAGA  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- ..................................................  Raphanus sativus var. oleiformis
FD961932       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW714907       <-- ..................................................  Raphanus sativus var. oleiformis
FD551670       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY445407       <-- ..................................................  Raphanus sativus cv GSK3-1
FD981453       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540469       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus sativus cv Early Scarlet Globe
FD544922       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. maritimus
FY440608       --> ACTAACCATTACATAAACTTTTACCATCCCTAA--TACTACTACCCAAGA  Raphanus sativus cv GSK3-1
EV571863       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. landra
FD985996       --> ACTAACCATTACATAAACTTTTAACATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. landra
FD536970       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> ACTAACCATTACATAAACTTTTACCATCCCTAAAATACTACTACCCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> ACTAACCATTACATAAACTTTTACCATCCCTAA--TACTACTACCCAAGA  Raphanus sativus var. oleiformis
FY432466       --> ACTAACCATTACATAAACTTTTACCATCCCTAA--TACTACTACCCAAGA  Raphanus sativus cv GSK3-1
EW719109       --> ..................................................  Raphanus sativus var. oleiformis

               201    -    251
UN17019        --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA-ACAA  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAAAACAA  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- ...TGGACTGTGTGTAGATAGAAACACAGGTGAAT-CACAAAAAA--CAA  Raphanus sativus var. oleiformis
FD961932       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW714907       <-- ..................................................  Raphanus sativus var. oleiformis
FD551670       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY445407       <-- ..................................................  Raphanus sativus cv GSK3-1
FD981453       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540469       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAAAACAA  Raphanus sativus cv Early Scarlet Globe
FD544922       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAAAACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAAAACAA  Raphanus raphanistrum subsp. maritimus
FY440608       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus sativus cv GSK3-1
EV571863       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus raphanistrum subsp. landra
FD985996       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus raphanistrum subsp. landra
FD536970       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> AGGGGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus sativus var. oleiformis
FY432466       --> AGGTGGACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus sativus cv GSK3-1
EW719109       --> .....GACTGTGTGTAGATAGAAACACAGGTGAATTCACAAAAAA--CAA  Raphanus sativus var. oleiformis

               251    -    301
UN17019        --> GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
FD948149       <-- GAGAACCAGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
EX890360       <-- GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> GAGAACCAGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
FD544922       --> GAGAACCAGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
EX753870       --> GAGAACCAGACAGGTAAGTCAGTACAGTACAGTAAA-----TCACTTGGT
FY440608       --> GAGAACCGGACAGGTAAGTCAGTACAGTACA----------TCACTTGGT
EV571863       --> GAGAACCGGACAGGTAAGTCAGTACAGTGCAGTACA-----TCACTTGGT
FD985996       --> GAGAACCGGACAGGTAAGTCAGTACAGTGCAGTACA-----TCACTTGGT
FD536970       --> GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
FD547522       --> GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACAGTACATCACTTGGT
EX893895       --> GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT
FY432466       --> GAGAACCGGACAGGTAAGTCAGTACAGTACA----------TCACTTGGT
EW719109       --> GAGAACCGGACAGGTAAGTCAGTACAGTACAGTACA-----TCACTTGGT

               301    -    351
UN17019        --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD948149       <-- GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
EX890360       <-- GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD961932       <-- ............................TTTTTACCGGGACCTCCATAGT
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD544922       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
EX753870       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FY440608       --> GTCTCTACTACATTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
EV571863       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD985996       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD536970       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FD547522       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCGTAGT
EX893895       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
FY432466       --> GTCTCTACTACATTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT
EW719109       --> GTCTCTACTACTTTATGGACAGTTCTCGTTTTTACCGGGACCTCCATAGT

               351    -    401
UN17019        --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FD948149       <-- AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EX890360       <-- AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FD961932       <-- AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FD544922       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EX753870       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FY440608       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EV571863       --> AGAAGAAATGACCCCAATCATCATTGTTTCCAGGTTGAACATCATAACAG
FD985996       --> AGAAGAAATGACCCCAATCATCATTGTTTCCAGGTTGAACATCATAACAG
FD536970       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FD547522       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EX893895       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
FY432466       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG
EW719109       --> AGAAGAAATGACCCCAATCATCATTGTTTCCGGGTTGAACATCATAACAG

               401    -    451
UN17019        --> TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- TTGGACTGCTCAGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- TTGGACTGCTCAGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus var. oleiformis
FD961932       <-- TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. maritimus
EW714907       <-- ..................................................  Raphanus sativus var. oleiformis
FD551670       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY445407       <-- ..................................................  Raphanus sativus cv GSK3-1
FD981453       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540469       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus cv Early Scarlet Globe
FD544922       --> TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. maritimus
FY440608       --> TTGGACTGCTCAGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus cv GSK3-1
EV571863       --> TTGGACTGCTCGGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. landra
FD985996       --> TTGGACTGCTCGGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. landra
FD536970       --> TTGGACTGCTCTGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> TTGGACTGCTCAGTGAACGTCCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> TTGGACTGCTCAGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus var. oleiformis
FY432466       --> TTGGACTGCTCAGTGAACGTTCCAAGTCCTTTAGGTGCCTTGAGGTTGTT  Raphanus sativus cv GSK3-1
EW719109       --> TTGGACTGCTCTGTGAACGTCCCAAGTCCTTTAGGTGCCTTGAGGTTGTA  Raphanus sativus var. oleiformis

               451    -    501
UN17019        --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FD948149       <-- TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
EX890360       <-- TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FD961932       <-- TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTACTGAAGC
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FD544922       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCCGAAGC
EX753870       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FY440608       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
EV571863       --> TGAAGAATCAACCACTTGAATATTCCTGAAGTAACTTGCTTTGCTGAAGC
FD985996       --> TGGAGAATCAACCACTTGAATATTCCTGAAGTAACTTGCTTTGCTGAAGC
FD536970       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FD547522       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
EX893895       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
FY432466       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC
EW719109       --> TGAAGAATCAACCACTTGAATGTTCCTGAAGTAACTTGCTTTGCTGAAGC

               501    -    551
UN17019        --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- CCTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGC..
FD948149       <-- CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EX890360       <-- CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FD961932       <-- ..................................................
EW714907       <-- ....TTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGTCCA
FD551670       <-- .........gggATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FD544922       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EX753870       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FY440608       --> CTTCTTCTGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EV571863       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FD985996       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FD536970       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FD547522       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EX893895       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
FY432466       --> CTTCTTCTGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGGCCA
EW719109       --> CTTCTTCAGGGAATCTACCACTGCCCATTTGCGTTGAAGTGTGGTGTCCA

               551    -    601
UN17019        --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGACGCACT  Raphanus sativus var. oleiformis
FD961932       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW714907       <-- TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCGCT  Raphanus sativus var. oleiformis
FD551670       <-- TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- ...........................CCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. maritimus
FY445407       <-- .............................CCATTCAATCATTGAAGCACT  Raphanus sativus cv GSK3-1
FD981453       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD540469       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus sativus cv Early Scarlet Globe
FD544922       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. maritimus
FY440608       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus sativus cv GSK3-1
EV571863       --> TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. landra
FD985996       --> TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. landra
FD536970       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGACGCACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGAAGCACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> TCTGCTTGTGAGTTCACAACTTCCCCTCCCCATTCAATCATTGACGCACT  Raphanus sativus var. oleiformis
FY432466       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCACT  Raphanus sativus cv GSK3-1
EW719109       --> TCTGCTTGTGAGTTCACAACTTCTCCTCCCCATTCAATCATTGAAGCGCT  Raphanus sativus var. oleiformis

               601    -    651
UN17019        --> TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- TTCTGTTAAGTAAG-AGAAGAGGAAAAATGGCCAGTATCCTAAAACATAG
EX890360       <-- TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
FD961932       <-- ..................................................
EW714907       <-- TTCTGTTAAGTAGG-AGAAGAGAAAAGATGGCCAGTATCCTAAAACATAG
FD551670       <-- TTCTGTTAAGTAGG-AGAAGAGAAAAGATGGCCAGTATCCTAAAACATAG
EX750417       <-- TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATC-TAAAACATAG
FY445407       <-- TTCTGT-AAGTAGGGAAAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> TTCTGTTAAGTAAG-AGAAGAGGAAAAATGGCCAGTATCCTAAAACATAG
FD544922       --> TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
EX753870       --> TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
FY440608       --> TTCTGTTAAGTAGG-AAAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
EV571863       --> TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
FD985996       --> TTCTGTTAAGTAGG-AGAAGAAGAAAGATGGCCAGTATCCTAAAACATAG
FD536970       --> TTCTGTTAAGTAGG-AGAAGAGAAAAGATGGCCAGTATCCTAAAACGTAG
FD547522       --> TTCTGT............................................
EX893895       --> TTCTGTTAAGTAGG-AGAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
FY432466       --> TTCTGTTAAGTAGG-AAAAGAGGAAAGATGGCCAGTATCCTAAAACATAG
EW719109       --> TTCTGTTAAGTAGG-AGAAGAGAAAAGATGGCCAGTATCCTAAAACATAG

               651    -    701
UN17019        --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
EX890360       <-- CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FD961932       <-- ..................................................
EW714907       <-- CCGTTTCCAAATTGCATCCACCAATGTCCCTCTTTTGGATCCTTCCAGAT
FD551670       <-- CCGTTTCCAAATTGCGTCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
EX750417       <-- CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FY445407       <-- CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FD544922       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
EX753870       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FY440608       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
EV571863       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FD985996       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FD536970       --> CCGTTTCCAAATTGCATCCACCAGTGTCC-TCTTTTGGATCCTTCCAGAT
FD547522       --> ..................................................
EX893895       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
FY432466       --> CCGTTTCCAAATTGCATCCACCAGTGTCCCTCTTTTGGATCCTTCCAGAT
EW719109       --> CCGTTTCCAAATTGCATCCACCAATGTCCCTCTTTTGGATCCTTCCAGAT

               701    -    751
UN17019        --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
EX890360       <-- CAGAATGCTGATATCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FD961932       <-- ..................................................
EW714907       <-- CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FD551670       <-- CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
EX750417       <-- CAGAATGCTGATGTCATACTGGGAGTTACGGTAGCCAGAGACCGGAGAGA
FY445407       <-- CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAAACCGGAGAGA
FD981453       <-- ...gATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGAC-GGAGAGA
FD990288       <-- ....................................AGAGACCGGAGAGA
FD540469       <-- ..................................................
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> CAGAATGCTGATGTCATACTGCGAGT........................
FD544922       --> CAGAATGCTGATGTCATACTGGGAGTTACGGTAGCCAGAGACCGGAGAGA
EX753870       --> CAGAATGCTGATGTCATACTGGGAGTTACGGTAGCCAGAGACCGGAGAGA
FY440608       --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAAACCGGAGAGA
EV571863       --> CAGAATGCTGATGCCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FD985996       --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FD536970       --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FD547522       --> ..................................................
EX893895       --> CAGAATGCTGATATCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA
FY432466       --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAAACCGGAGAGA
EW719109       --> CAGAATGCTGATGTCATACTGCGAGTTACGGTAGCCAGAGACCGGAGAGA

               751    -    801
UN17019        --> TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- TACTTGCTCCCATTGCTATGTCGCTGTTGATTTGAATAAAACCAGAGCAA
EX890360       <-- TGCTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD961932       <-- ..................................................
EW714907       <-- TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD551670       <-- TACTTGCTCCCATTGCTATGTCGCTGTTGATTTGAATAAAACCAGAGCAA
EX750417       <-- TACTAGCTCCCATTGCTATGTCACTGTTTATTTGGATAAAACCAGAGCAA
FY445407       <-- TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD981453       <-- TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD990288       <-- TACAAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAA-CCAGAGCAA
FD540469       <-- ...........................tttTTTGAATAAA-CCAGAGCAA
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> TACTAGCTCCCATTGCTATGTCACTGTTattggat...............
EX753870       --> TACTAGCTCCCATTGCTATGTCACTG........................
FY440608       --> TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAG...
EV571863       --> TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD985996       --> TACAAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD536970       --> TACTTGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FD547522       --> ..................................................
EX893895       --> TGCTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
FY432466       --> TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA
EW719109       --> TACTAGCTCCCATTGCTATGTCACTGTTTATTTGAATAAAACCAGAGCAA

               801    -    851
UN17019        --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTC---CAAGT
EX890360       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD961932       <-- ..................................................
EW714907       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD551670       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
EX750417       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACAAGTCCAGTAAGT
FY445407       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD981453       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD990288       <-- AGAAGATTGTA---GCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD540469       <-- AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
EV566817       <-- ..................................................
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD985996       --> AGAAGATTGTAGC---CAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FD536970       --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTC-AGTAAGT
FD547522       --> ..................................................
EX893895       --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
FY432466       --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT
EW719109       --> AGAAGATTGTAGCAGCCAGTAGCTTGATATGCATCACTAGTCCAGTAAGT

               851    -    901
UN17019        --> GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- GAAGAGTCTTGTGTTc..................................
EX890360       <-- GAAGAGTCTTGTATTATTGTCACCATACAGATCCGGGCTCGCCTGCCAAC
FD961932       <-- ..................................................
EW714907       <-- GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
FD551670       <-- GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
EX750417       <-- GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
FY445407       <-- GAAGAGTCTGGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
FD981453       <-- GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTTACCTGCCAAC
FD990288       <-- GAAGAGTCTTGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAAC
FD540469       <-- GAAGAGTCTTGTGTTATTGTCACAGTATAGATCCGGGCTCAC-TGCCAAC
EV566817       <-- ..............................................CAAC
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> GAAGAGTCTTGTGTTATTGTCACCATACAGAT..................
FD985996       --> GAAGAGTCTTGT......................................
FD536970       --> GAAGAGTCTTGTGT-A-TGTCACAGTATAGATCCGGGCTCACtgcc....
FD547522       --> ..................................................
EX893895       --> GAAGAGTCTTGTatattgt...............................
FY432466       --> GAAGAGTCTGGTGTTATTGTCACCATACAGATCCGGGCTCACCTGCCAA.
EW719109       --> GAAAAGTCTTGTGTTATTGT..............................

               901    -    951
UN17019        --> CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948149       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX890360       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAA  Raphanus sativus var. oleiformis
FD961932       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW714907       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAA  Raphanus sativus var. oleiformis
FD551670       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750417       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAA  Raphanus raphanistrum subsp. maritimus
FY445407       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT  Raphanus sativus cv GSK3-1
FD981453       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD990288       <-- CAGTTACGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT  Raphanus raphanistrum subsp. landra
FD540469       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566817       <-- CAGCTTCGATGCTGTTAAGATCTTGTCCGAAAGAGCCACCAAGAAGCCAT  Raphanus raphanistrum subsp. landra
FD972603       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY428948       <-- ..................................................  Raphanus sativus cv GSK3-1
FD943979       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD544922       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753870       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY440608       --> ..................................................  Raphanus sativus cv GSK3-1
EV571863       --> ..................................................  Raphanus raphanistrum subsp. landra
FD985996       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536970       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD547522       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893895       --> ..................................................  Raphanus sativus var. oleiformis
FY432466       --> ..................................................  Raphanus sativus cv GSK3-1
EW719109       --> ..................................................  Raphanus sativus var. oleiformis

               951    -   1001
UN17019        --> ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTCGGCTCCCACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ATCTGCGACAAGCTGAACTCGTTCTc........................
FD961932       <-- ..................................................
EW714907       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTCGGCTCCCACAC
FD551670       <-- ATCTGAGACAAGCTGAACTCGTTCTGCTGCTGTATCTTCGGCTCCCACAC
EX750417       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTTGGCTCCCACAC
FY445407       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTTGGCTCCCACAC
FD981453       <-- ATCTGCGACAGGCTGAACTCGTTCTGCTGCTGTATCTTTGGCTCCCACAC
FD990288       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTCGGCTCCCACAC
FD540469       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTGGGCTCCCACAC
EV566817       <-- ATCTGCGACAAGCTGAACTCGTTCTGCTGCTGTATCTTCGGCTCCCACAC
FD972603       <-- ..................................................
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1001   -   1051
UN17019        --> ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FD551670       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
EX750417       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FY445407       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FD981453       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FD990288       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FD540469       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
EV566817       <-- ATTAATAGTCGCTTTAGCTCCATAGTACTTATCCCCTTCCACATAAGCTA
FD972603       <-- ...............................cCCCTTTCCACATAAGCTA
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1051   -   1101
UN17019        --> TGGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- TGGCATGCTGGTGACCACTTTGGTCGATGAGGTCAGGTTCAGCAGATTTA
FD551670       <-- TGGCATGCTGGTGACCGCTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
EX750417       <-- TGGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
FY445407       <-- TGGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
FD981453       <-- TGGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
FD990288       <-- TCGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
FD540469       <-- TGGCATGCTGGT-CCCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
EV566817       <-- TCGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATTTA
FD972603       <-- TGGCATGCTGGTGACCACTTTGGTTGATGAGGTCAGGTTCAGCAGATT-A
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1101   -   1151
UN17019        --> GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- GGCAAAGGGACGGTTCTGTGCTTCTTCTTGCCGTATCTTTT-GACAGAAC
FD551670       <-- GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
EX750417       <-- GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
FY445407       <-- GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
FD981453       <-- GGCAAAGGGACAGTTCTATGCTTCTTCTTGCCATATCTTTTTGACAGAAC
FD990288       <-- GGCAAAGGGACAGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
FD540469       <-- GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
EV566817       <-- GGCAAAGGGACAGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
FD972603       <-- GGCAAAGGGACGGTTCTATGCTTCTTCTTGCCATATCTTTT-GACAGAAC
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1151   -   1201
UN17019        --> TTGCTCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- TTGCCCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FD551670       <-- TTGCTCTCAAGACATCGTCTTCTTTAGTCCTCCcc...............
EX750417       <-- TTGCTCTCAAGACATCGTCTTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FY445407       <-- TTGCTCTCAAGACATCGTCTTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FD981453       <-- TTGCTCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FD990288       <-- TTGCTCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FD540469       <-- TTGCTCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
EV566817       <-- TTGCTCTCAAGACATCGTCCTCTTTGGTCCTCCTCATGGGAATGGTTCCT
FD972603       <-- TTGCTCTCAAGACATCGTCCTCTTTAGTCCTCCTCATGGGAATGGTTCCT
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1201   -   1251
UN17019        --> TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGTGGTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGTGGTTCCTT
FD551670       <-- ..................................................
EX750417       <-- TCAGCGCATTTGCCATAACGATGCCATA-CTGAGGGATATGTGGTTCCTT
FY445407       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGAGGTTCCTT
FD981453       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGGGGTTCCTT
FD990288       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGTGGTTCCTT
FD540469       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGCGGTTCCTT
EV566817       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGTGGTTCCTT
FD972603       <-- TCAGCGCATTTGCCATAACGATGCCATAACTGAGGGATATGGGGTTCCTT
FY428948       <-- ..................................................
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1251   -   1301
UN17019        --> GTCTTTAGATTTAGTAGA------AGACACTTTGTTGTCATCAAAGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- GTCTTTTGATTTAGc...................................
FD551670       <-- ..................................................
EX750417       <-- GTCTTTAGATTTAGTAcc................................
FY445407       <-- GTCTTTAGATTCAGTAGA------AGACACTTTGTTGTCATCAAAGAGTC
FD981453       <-- GTCTTTTGATTTAGTAGAGAAAGAAGACACTTTGTTGTCATCAAAGAGTC
FD990288       <-- GTCTTTAGATTTAGTAGA------AGACACTTTGTTGTCATCAAAGAGTC
FD540469       <-- GTCTTTAGATTCAGTAGA------GGACACTTTGTTGTCATCAAAGAGTC
EV566817       <-- GTCTTTAGATTTAGTAGA------AGACACTTTGTTGTCATCAAAGAGTC
FD972603       <-- GTCTTTTGATTTAGTAGA------AGACACTTTGTTGTCATCAAAGAGTC
FY428948       <-- ........................................TCAAAGAGTC
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1301   -   1351
UN17019        --> CCTCAGGATGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- CCTCAGGGTGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
FD981453       <-- CCTCAGGATGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
FD990288       <-- CCCCAGGATGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
FD540469       <-- CCTCAGGATGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
EV566817       <-- CCTCAGGATGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
FD972603       <-- CCTCAGGATGGTAGTTAGGCTTCACCTGAATCTTGTGATCTTTGAGGAAA
FY428948       <-- CCTCAGG-GGGTAGTTAGGCTTCATCTGAATCTTGTGATCTTTGAGGAAA
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1351   -   1401
UN17019        --> GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FD981453       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FD990288       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FD540469       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
EV566817       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FD972603       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FY428948       <-- GGATGATCAAAAGCTGGTTGCTTTGTGATAGGAACACAGTCAATGATATC
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1401   -   1451
UN17019        --> ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTCA
FD981453       <-- ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTCA
FD990288       <-- ACCATCTGGGCTCTGAATGCTCTTGGCGGCAGGTTTGTTCAACCTGTTCA
FD540469       <-- ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTCA
EV566817       <-- ACCATCTGGGCTCTGAATGCTCTTGGCGGCAGGTTTGTTCAACCTGTTCA
FD972603       <-- ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTTA
FY428948       <-- ACCATCTGGGCTCTGAATGCTCTTGACGGCAGGTTTGTTAAGCCTGTTCA
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1451   -   1501
UN17019        --> GATGCTTCTTGACTTCGAACTTCTGCTTAGATACGCCGGACCTTGCGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- GATGCTTC..........................................
FD981453       <-- GATGCTTCTTGACTTCGAAC..............................
FD990288       <-- GATGCTTCTTGACTTCGAACTTCTGCTTAGATACGCCGGACCTTc.....
FD540469       <-- GATGCTTCTTGACTTGGAACTTCTGCTTAGATACGCCGGACCTTGCGGCG
EV566817       <-- GATGCTTCTTGACTTCGAACTTCTGCTTAGATACGCCGGACCTTGCGGCG
FD972603       <-- GATGCTTCTTGACTTCGAACTTCTGCTTAGATACGCCGGACCTTGCGGCG
FY428948       <-- GATGCTTCTTGACTTCGAACTTCTGCTTAGATACGCCGGACCTTGCGGCG
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1501   -   1551
UN17019        --> CAGGATAGAGAGAAGAAACCCCAAAGACATAAACACACTAAGAAACCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- CAGGATAGAGAGAAGAAACCCCAAAGACATAAACACACTAAGAAACCTCT
EV566817       <-- CAGGATAGAGAGAAGAAACCCCAAAGACATAAACACACTAAGAAACCTCT
FD972603       <-- CAGGATAGAGAGAAGAAACCCTAAAGACATAAACACACTAAGAAGCCTCT
FY428948       <-- CAGGATAGAGAGAAGAAACCCCAAAGACATAAACACACTAAGAAACCTCT
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1551   -   1601
UN17019        --> ACCTAACTTATCCCTGCTAAGATGCTTCGCCGCTCCCATTGTATTCCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ACCTAACTTATCCCTGCTAAGATGCGCCGCCGCTCCCcc...........
EV566817       <-- ACCTAACTTATCCCTCCTAAGATGCTTACCCGCTCCCATTGTATTCCTTT
FD972603       <-- ACCTAACTTATACCTGCTAAGATGCTTCGCCGCTCCCATTGTATTCCTTT
FY428948       <-- ACCTAACTTATCCCTCCTAAGATGCGCCGCCGCTCCCATTGTATTCCTTT
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1601   -   1651
UN17019        --> TTAAGCACTGAAAAGAAGCTTCGCCTCCTCTCTCTCTCTCTCTCTCGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- -AAAGCGCTGAAAAGAAGCTTCGCCTCCTCTCTCTCTCTCTCTCTCGTTC
FD972603       <-- TTAAGCACTGAAAAaa..................................
FY428948       <-- TTAAGCACTGAAAAGAAGCTTCGCCTCCTCCCTCTCTCTCTCTCGCGTTC
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1651   -   1701
UN17019        --> GTCAACATACACTCTGGAGCTTTTAGAAGAAAGAAAGAAAGAAACCCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- GTCAACATACACTCTGGAGCTTTTAGAAGAAAGAAAG----AAACCCTAA
FD972603       <-- ..................................................
FY428948       <-- GTCAACACACACTCTGGAGCTTTTAGAAGAAAGAAAGAAAGAAACCCTAA
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1701   -   1751
UN17019        --> CGAACGAGATGAGCTTGGAACAATAATGTGGTTCGTTGGGACAAAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW725441       <-- ..................................................
FD948149       <-- ..................................................
EX890360       <-- ..................................................
FD961932       <-- ..................................................
EW714907       <-- ..................................................
FD551670       <-- ..................................................
EX750417       <-- ..................................................
FY445407       <-- ..................................................
FD981453       <-- ..................................................
FD990288       <-- ..................................................
FD540469       <-- ..................................................
EV566817       <-- CGAACGAGATGAGCTctgaaccc...........................
FD972603       <-- ..................................................
FY428948       <-- CGAACGAGATGAGCTTGGAACAATAATGTGGTTCGTTGGGACAAAGGCTT
FD943979       --> ..................................................
FD544922       --> ..................................................
EX753870       --> ..................................................
FY440608       --> ..................................................
EV571863       --> ..................................................
FD985996       --> ..................................................
FD536970       --> ..................................................
FD547522       --> ..................................................
EX893895       --> ..................................................
FY432466       --> ..................................................
EW719109       --> ..................................................

               1751   -   1801
UN17019        --> TGGA
                   ~~~~
EW725441       <-- ....
FD948149       <-- ....
EX890360       <-- ....
FD961932       <-- ....
EW714907       <-- ....
FD551670       <-- ....
EX750417       <-- ....
FY445407       <-- ....
FD981453       <-- ....
FD990288       <-- ....
FD540469       <-- ....
EV566817       <-- ....
FD972603       <-- ....
FY428948       <-- TGGA
FD943979       --> ....
FD544922       --> ....
EX753870       --> ....
FY440608       --> ....
EV571863       --> ....
FD985996       --> ....
FD536970       --> ....
FD547522       --> ....
EX893895       --> ....
FY432466       --> ....
EW719109       --> ....