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Alignment for radish unigene UN17038

               1      -     51
UN17038        --> GTGAAAGAGTTTTATGCAATACAAAACATAGAGGAGGCGGAAAGGCTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ..................................................
FY440286       --> GTGAAAGAGTTTTATGCAATACAAAACATAGAGGAGGCGGAAAGGCTTAC
FY452641       --> ..............................GAGGAGGCGGAAAGGCTTAC
EV543021       --> ...................................ggaGGAAAGGCTTAC
EV570655       --> ..................................gggaGGAAAGGCTTAC
EV570656       --> ..................................gggaGGAAAGGCTTAC
EX752100       --> .......................................ggAAGGCTTAC
EV546936       --> ..................................................
EX753569       --> ..................................................

               51     -    101
UN17038        --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..........cgTCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539166       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440286       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus sativus cv GSK3-1
FY452641       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus sativus cv GSK3-1
EV543021       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570655       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. landra
EV570656       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. landra
EX752100       --> TACATTCATTCATCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. maritimus
EV546936       --> ..........cgTCCATCAACAACAATTACATCATTACACACAAGTCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753569       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN17038        --> CTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- CTGAACAAATAAAAATCAATAATTACCGGAATGGGTACGGTTCCAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539166       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440286       --> TTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT  Raphanus sativus cv GSK3-1
FY452641       --> TTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT  Raphanus sativus cv GSK3-1
EV543021       --> TTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570655       --> CTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT  Raphanus raphanistrum subsp. landra
EV570656       --> CTGAACAAATAAAAATCAATAATTACCGGAATGGGTTCGGTTCCAAACGT  Raphanus raphanistrum subsp. landra
EX752100       --> CTGAACAAATAAAAATCAATAATTACCGGAATGGGTACGGTTCCAAACGT  Raphanus raphanistrum subsp. maritimus
EV546936       --> CTGAACAAATAAAAATCAATAATTACCGGAATGGGTACGGTTCCAAACGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753569       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN17038        --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAGGA
EV539166       <-- ..................................................
FY440286       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
FY452641       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
EV543021       --> GTGTGTGACCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
EV570655       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
EV570656       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
EX752100       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAAGA
EV546936       --> GTGTGTG-GCTTTCACGTTAAAATTATACATTCTTTTATACCAACAAGGA
EX753569       --> ..................................................

               201    -    251
UN17038        --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
EV539166       <-- ..................................................
FY440286       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGA
FY452641       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGA
EV543021       --> GTGATAGATAGATATATATATATTTTTGTAAATAACTACAAAAGATGGGG
EV570655       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
EV570656       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
EX752100       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
EV546936       --> GTGATAGATAGATATATAAATATTTTTGTAAATAACTACAAAAGATGGGG
EX753569       --> ..................................................

               251    -    301
UN17038        --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EV539166       <-- ..................................................
FY440286       --> AACCTAAAGCGTGGGAGGGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
FY452641       --> AACCTAAAGCGTGGGAGGGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EV543021       --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EV570655       --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EV570656       --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EX752100       --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EV546936       --> AACCTAAAGCGTGGGAGTGAGTAGCTTTAGAGTTTCTTGGGGAAAGTCAT
EX753569       --> ..................................................

               301    -    351
UN17038        --> ACCGCGGCCTCGGATAGAAAGAGAGGGTCCTTTGGCAGAGCTGACTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ACCGCGGCCTCGGATAGAAAGAGAGGGTCCTTTGGCAGAGCTGACTACAT
EV539166       <-- ..................................................
FY440286       --> ACCGCGGCCTCGGATAGAAAGAGAAGGTCCTTTGGCAGAGCTCACTACAC
FY452641       --> ACCGCGGCCTCGGATAGAAAGAGAAGGTCCTTTGGCAGAGCTCACTACAC
EV543021       --> ACCGCGGCCTCGGATAGAAAGAGAAGGTCCTTTGGCAGAGCTGACTACAT
EV570655       --> ACCGCGGCCTCGGATAGAAAGAGAGGGTCCTTTGGCAGAGCTGACTACAT
EV570656       --> ACCGCGGCCTCGGATAGAAAGAGAGGGTCCTTTGGCAGAGCTGACTACAT
EX752100       --> ACCGCGGCCTCGGATAGAAAGAGAGGGTCCCTTGGCAGAGCTGACTACAT
EV546936       --> ACCGCGGCCTCGGATAGAAAGAGAGGGTCCTTTGGCAGAGCTGACTACAT
EX753569       --> ..................AAGAAAGGGTCCTTTGGCAAAACTGACTACAT

               351    -    401
UN17038        --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EV539166       <-- ..................................................
FY440286       --> TGGTATCAAGGTAGATAACTACCACAGTGATGTCATCGTGGAAATGCCTC
FY452641       --> TGGTATCAAGGTAGATAACTACCACAGTGATGTCATCGTGGAAATGCCTC
EV543021       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EV570655       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EV570656       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EX752100       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EV546936       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC
EX753569       --> TGGTATCAAGGTAGATGACTACCACAGTGATGTCATCGTGGAAATGCCTC

               401    -    451
UN17038        --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
EV539166       <-- ..................................................
FY440286       --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
FY452641       --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
EV543021       --> CTCACGCCTCTCTCTATCTCCATCAGATCAGAGTATCTCATTTCTCTCTT
EV570655       --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
EV570656       --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
EX752100       --> CTCACGCCTCTCTCTATCTTCATCAGATCAGAGTATCTCATTTCTCTCTT
EV546936       --> CTCACGCCTCTCTCTATCTTCATCAAATCAGAGTATCTCATTTCTCTCTT
EX753569       --> CTCACGCCTCTCTCTATCTTCATCAAATCAAAGTATCTCATTTCTCTCTT

               451    -    501
UN17038        --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCc..............
EV539166       <-- ..................................................
FY440286       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
FY452641       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
EV543021       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
EV570655       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
EV570656       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
EX752100       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT
EV546936       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCc..............
EX753569       --> CTTCGCTGCCGCTTGCATTGCCATCTTCACCAGTCTACGTGCTATCCCGT

               501    -    551
UN17038        --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ..................................................
FY440286       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT
FY452641       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT
EV543021       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT
EV570655       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGATTGCTAAGCTGT
EV570656       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGATTGCTAAGCTGT
EX752100       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT
EV546936       --> ..................................................
EX753569       --> TTCGTGGGTGGTTCTGAACGATGTCAACAGCTTCTTGGTTGCTAAGCTGT

               551    -    601
UN17038        --> TCCCATAGTCCATCAGAAGCAAATATAAGAAACTGGTCTTGTGGTTGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539166       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440286       --> TCCCATAGTCCATCAGAAGCAAATATAAGAAACTGGTCTTGTGGTTGGAG  Raphanus sativus cv GSK3-1
FY452641       --> TCCCATAGTCCATCAGAAGCAAATATAAGAAACTGGTCTTGTGGTTGGAG  Raphanus sativus cv GSK3-1
EV543021       --> TCCCATAGTCCACCAGAAGCAAATATAAGAAACTGATCTTGTGGTTGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570655       --> TCCCATAGTCAATCAGAAGCAAATATAAGAAACTAATCCTGTGGTTGGAG  Raphanus raphanistrum subsp. landra
EV570656       --> TCCCATAGTCAATCAGAAGCAAATATAAGAAACTAATCCTGTGGTTGGAG  Raphanus raphanistrum subsp. landra
EX752100       --> TCCCATAGTCCATCAGAAGCAAATATAAGAAACTGGTCTTGTGGTTGGAG  Raphanus raphanistrum subsp. maritimus
EV546936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753569       --> TCCCATAGTCCATCAAAAGCAAATATAAGAAACTGGTCTTGTGGTTGGAG  Raphanus raphanistrum subsp. maritimus

               601    -    651
UN17038        --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTCTTGATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539166       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440286       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTTTTGATCG  Raphanus sativus cv GSK3-1
FY452641       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTTTTGATCG  Raphanus sativus cv GSK3-1
EV543021       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTTTTGATCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570655       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTCTTGATCG  Raphanus raphanistrum subsp. landra
EV570656       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTCTTGATCG  Raphanus raphanistrum subsp. landra
EX752100       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTCTTGATCG  Raphanus raphanistrum subsp. maritimus
EV546936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753569       --> CTCATGCTCTGTTATCGACGGTTCCCCACTCAAGATTGGTCTCTTGATCG  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17038        --> GCTCTCTGAGTCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ..................................................
FY440286       --> GCTCTCTGAGTCTATACTTGGTGTACAACGGTTCCCTGTTGAACTCCGCC
FY452641       --> GCTCTCTGAGTCTATACTTGGTGTACAACGGTTCCCTGTTGAACTCCGCC
EV543021       --> GCTCTCTGAGTCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC
EV570655       --> GCTCTCTGAATCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC
EV570656       --> GCTCTCTGAGTCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC
EX752100       --> GCTCTCTGAGTCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC
EV546936       --> ..................................................
EX753569       --> GCTCTCTGAGTCTATACTTCGTGTACAACGGTTCCCTGTTGAACTCCGCC

               701    -    751
UN17038        --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ..................................................
FY440286       --> TTCTTCAGATACATGTCTCCTATGGATCTAGACACCTGAATAAGGCCCTT
FY452641       --> TTCTTCAGATACATGTCTCCTATGGATCTAGACACCTGAATAAGGCCCTT
EV543021       --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT
EV570655       --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT
EV570656       --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT
EX752100       --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT
EV546936       --> ..................................................
EX753569       --> TTCTTAAGATACATGTCTCCTATGGATCTAGATACCTGAATAAGGCCCTT

               751    -    801
UN17038        --> AACGCGCCACACATTGTGCTTTAACACGACGATATGCGAGTCATCCGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539166       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY440286       --> AACGCGCCACACATTGTGCTTCAACACGACGATATGCGAGTCATCCGGGT  Raphanus sativus cv GSK3-1
FY452641       --> AACGCGCCACACATTGTGCTTCAACACGACGATATGCGAGTCATCCGGGT  Raphanus sativus cv GSK3-1
EV543021       --> AACGCGCCACACATTGTGCTTCAACACGACAATATGCGAGTCATCCGGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV570655       --> AACGCGCCATACATTGTGCTTTAACACGACAATATGCGAGTCATCCGGGT  Raphanus raphanistrum subsp. landra
EV570656       --> AACGCGCCATACATTGTGCTTTAACACGACAATATGC.............  Raphanus raphanistrum subsp. landra
EX752100       --> AACGCGCCACACATTGTGCTTTAACACGACGATATGCGAGTCATCCGGGT  Raphanus raphanistrum subsp. maritimus
EV546936       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX753569       --> AACGCGCCACACATTGT.................................  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN17038        --> GCAAGGAGTGCATCTCCTGCCTAACAGACTCGATGCTCACATTATGTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- .CAAGGAGTGCATCTCCTGTCTA-CAGACTCGATGCTCACATTATGTTCA
FY440286       --> GCAAGGAGTGCATCTCCTGCCTAACAGACTCGATGCTCACATTATGTTCA
FY452641       --> GCAAGGAGTGCATCTCCTGCCTAACAGACTCGATGCTCACATTATGTTCA
EV543021       --> GCAAGGAGTGCATCTCCTGTCTAACAGACTCGATGCTCACATTATGTTCA
EV570655       --> GCAAGGAGTGCATCTCCTGCCTAACAGACTCGATGCTCACATTATGTTCA
EV570656       --> ..................................................
EX752100       --> GCAAGGA-TGCATTTCCTGCCTAACAGACTCGATGCTCACATTATGTTCA
EV546936       --> ..................................................
EX753569       --> ..................................................

               851    -    901
UN17038        --> GCTGAGAGCTGAAGCGCAATAGCCTCACCAGTCGCCTTCATAGCCCTCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- GCTGAGAGCTGAAGCGCAATAGCCTCACCAGTCGCCTTCATAGCCCTCCC
FY440286       --> GC................................................
FY452641       --> ..................................................
EV543021       --> GCTGAGAGCTGAAGCGCAATAGCCTCACCAGTCGCCTTCATAGCCCTCCC
EV570655       --> GCTGAGAGCTG.......................................
EV570656       --> ..................................................
EX752100       --> GCTGAGAGCTGAAGCGCAATAGCCTCACCAGTC.................
EV546936       --> ..................................................
EX753569       --> ..................................................

               901    -    951
UN17038        --> AAGGACAGCACGTGAATCCCCAACGTTAGCTATGTAGAGCATCCCTCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- AAGGACAGCACGTGAATCCCCAACGTTAGCTATGTAGAGCATCCCTCCGC
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> AAGGACAGCACGTGAATCCCCAACGTTAGCTATGTAGAGCATC.......
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               951    -   1001
UN17038        --> ATATAACACCCACAAGGCAGCAAGACCCAACCGCTGCAATCAGTGGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ATATAACACCCACAAGGCAGCAAGACCCAACCGCTGCAATCAGTGGCTTA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1001   -   1051
UN17038        --> ACCGGCCACTGCTTTGTCACAACCCCAAGAAACCCTTCTTCAGTAGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ACCGGCCACTGCTTTGTCACAACCCCAAGAAACCCTTCTTCAGTAGCTTC
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1051   -   1101
UN17038        --> ATACGCCTTTCTAATCACATCCATAGACATACACCCCTGCTCCGCTGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ATACGCCTTTCTAATCACATCCATAGACATACACCCCTGCTCCGCTGCAA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1101   -   1151
UN17038        --> ACCTCTTTAAATGCTGAAAGAGATGATCATTGACAAAGCGGGAGGTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ACCTCTTTAAATGCTGAAAGAGATGATCATTGACAAAGCGGGAGGTCTCA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1151   -   1201
UN17038        --> GGCCCCCCATGACCGTCATAGATTCCAATAAAAGTACCATAAGGACCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- GGCCCCCCATGACCGTCATAGATTCCAATAAAAGTACCATAAGGACCAGA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1201   -   1251
UN17038        --> ACCAGAGTCAAGGGTACTCAAAGGGCCAGACTCGACTTGGCTCTGATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ACCAGAGTCAAGGGTACTCAAAGGGCCAGACTCGACTTGGCTCTGATCCT
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1251   -   1301
UN17038        --> CGAGGAGATTGTTGGCCTGAACAACAGCCATAGAGAAGTCACCGAGTAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- CGAGGAGATTGTTGGCCTGAACAACAGCCATAGAGAAGTCACCGAGTAGG
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1301   -   1351
UN17038        --> CGCTGACCAGAGTCTTTGTACCAGAGGAGTCCATCATGTTTTCCAGTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- CGCTGACCAGAGTCTTTGTACCAGAGGAGTCCATCATGTTTTCCAGTTGA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1351   -   1401
UN17038        --> ATCAACGGACCTGCCCGATGATGAAGAAGGCCACAGACAAGCGCTCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- ATCAACGGACCTGCCCGATGATGAAGAAGGCCACAGACAAGCGCTCAAAA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1401   -   1451
UN17038        --> GTTTCATCAAAGTTGTTATTAACATATCCCCCTCATGCCATCAGGGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- GTTTCATCAAAGTTGTTATTAACATATCCCCCTCATGCCATCAGGGAAAC
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1451   -   1501
UN17038        --> CCTCTTTCTCTTCCTCCACATCAGTCAAAGGCAATACAAGCAGATGTAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- CCTCTTTCTCTTCCTCCACATCAGTCAAAGGCAATACAAGCAGATGTAAC
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1501   -   1551
UN17038        --> AGGGAGAAGTCAACAGATACGGAAGATGACGCTAATCAACGGGAACTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- AGGGAGAAGTCAACAGATACGGAAGATGACGCTAATCAACGGGAACTCCA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1551   -   1601
UN17038        --> GAATCGAGATTCAAAGCAATCTTGATCTTAGACAAGGGTTTTGTAGTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- GAATCGAGATTCAAAGCAATCTTGATCTTAGACAAGGGTTTTGTAGTGAC
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1601   -   1651
UN17038        --> GAGAGAGAAGATCAGAAAAGACACCTGATGAAGCTTTACAAGAAAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- ..................................................
EV539166       <-- GAGAGAGAAGATCAGAAAAGACACCTGATGAAGCTTTACAAGAAAGAGAA
FY440286       --> ..................................................
FY452641       --> ..................................................
EV543021       --> ..................................................
EV570655       --> ..................................................
EV570656       --> ..................................................
EX752100       --> ..................................................
EV546936       --> ..................................................
EX753569       --> ..................................................

               1651   -   1701
UN17038        --> GAAACGGTGGAGATCTGAAAGGATCGAAGTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV551924       <-- .................................
EV539166       <-- GAAACGGTGGAGATCTGAAAGGATCGAAGTATC
FY440286       --> .................................
FY452641       --> .................................
EV543021       --> .................................
EV570655       --> .................................
EV570656       --> .................................
EX752100       --> .................................
EV546936       --> .................................
EX753569       --> .................................