1      -     51
UN17070        --> TGGGGAGATAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- TGGGGAGATAAAAGAGGAGACGAAGATTTGTTAACACTCAGGGGCAAA-A  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- .....gGATAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- .......ggAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. maritimus
FD554088       <-- ......ggaAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. landra
EW720594       <-- ..................................................  Raphanus sativus var. oleiformis
EY902542       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538516       --> TGGGGAGATAAAAGAGGAGACGAAGATTTGTTAACACTCAGGGGCAAA-A  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> .....gGATAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus sativus cv Early Scarlet Globe
EV525727       --> .......ggAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. maritimus
EW716973       --> .........AAAGGAGGAGACGAAGATTTGTTAACACTCAGGGGCAAA-A  Raphanus sativus var. oleiformis
EX749238       --> .......ggAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. maritimus
FD949680       --> .......ggAAAAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus sativus cv Early Scarlet Globe
FD989455       --> ..........ggAGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. landra
EV550355       --> ...........ggGAGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> ............gGAGGAGACGAAGATTTGCTAACACTCAGGGGCAAA-A  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> ............gGAGGAGACGAAGATTTGTTAACACTCAGGGGAAAA-A  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> .............ggGGAGGCGAAGATTTGTTAACACTCAGGACAAAACA  Raphanus raphanistrum subsp. maritimus
EY906344       --> ..............gGGAGACGAAGATTTGTTAACACTCAGGGGCAAA-A  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> ..............gGGAGGCGAAGATTTGTTAACACTCAGGGCAAAACA  Raphanus sativus cv Early Scarlet Globe
FD548697       --> .....................................ggAGGGCAAAACA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD940413       --> ..................................................  Raphanus sativus var. oleiformis
EX748897       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN17070        --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- AGAGAGAG--AAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. maritimus
FD554088       <-- AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. landra
EW720594       <-- ..AGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus var. oleiformis
EY902542       <-- ...........................TGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538516       --> AGAGAGAGA--AAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus cv Early Scarlet Globe
EV525727       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. maritimus
EW716973       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus var. oleiformis
EX749238       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. maritimus
FD949680       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus cv Early Scarlet Globe
FD989455       --> AGAG-TAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. landra
EV550355       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> AGAGAGA-A-AAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> AGAGAGAGA--AAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. maritimus
EY906344       --> AGAGAGAGA--AAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus sativus cv Early Scarlet Globe
FD548697       --> AGAGAGAGAGAAAGATGCAGATCTTCGTGAAAACCCTCACCGGAAAAACG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD940413       --> ..................................................  Raphanus sativus var. oleiformis
EX748897       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN17070        --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- ATAACCCTAGAAGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. maritimus
FD554088       <-- ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. landra
EW720594       <-- ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus var. oleiformis
EY902542       <-- ATAACCCTAGAAGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538516       --> ATAACCCTAGAAGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus cv Early Scarlet Globe
EV525727       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. maritimus
EW716973       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus var. oleiformis
EX749238       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. maritimus
FD949680       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus cv Early Scarlet Globe
FD989455       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. landra
EV550355       --> ATAACCCTAGAAGTGGAGAGTAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. maritimus
EY906344       --> ATAACCCTAGAAGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> ATAACCCTAGAGGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus sativus cv Early Scarlet Globe
FD548697       --> ATAACCCTAGAAGTGGAGAGCAGCGACACCATCGACAATGTCAAAGCCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> .....................................ATGTCAAAGCCAA  Raphanus raphanistrum subsp. maritimus
FD940413       --> ..................................................  Raphanus sativus var. oleiformis
EX748897       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN17070        --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATTTTCG  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. maritimus
FD554088       <-- AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. landra
EW720594       <-- AATCCAGGACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATTTTCG  Raphanus sativus var. oleiformis
EY902542       <-- AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538516       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus sativus cv Early Scarlet Globe
EV525727       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. maritimus
EW716973       --> AATCCAGGACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCG  Raphanus sativus var. oleiformis
EX749238       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. maritimus
FD949680       --> AATCCAGGACAAAGAAGGGATAC...........................  Raphanus sativus cv Early Scarlet Globe
FD989455       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. landra
EV550355       --> AATCCAGGACAAAGAAGGTATGCCACCGGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> AATCCAGGACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. maritimus
EY906344       --> AATCCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> AATTCAGGACAAAGAAGGTATACCACCAGACCAACAAAGGCTCATCTTCG  Raphanus sativus cv Early Scarlet Globe
FD548697       --> AATCCAGGACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> AATCCAGGACAAAGAAGGTATACCACCGGACCAACAAAGGCTCATCTTCG  Raphanus raphanistrum subsp. maritimus
FD940413       --> ..................................................  Raphanus sativus var. oleiformis
EX748897       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN17070        --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD573637       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EV530396       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD554088       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EW720594       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EY902542       <-- CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD945296       <-- ..................................................
EV538516       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD569422       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EV525727       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EW716973       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EX749238       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD949680       --> ..................................................
FD989455       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EV550355       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EX903866       --> CCGGGAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EY906131       --> CCGGTAAGCAGCTTGAAGACGGCAGAACCTTAGCCGATTACAACATCCAG
EY898449       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EY906344       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
EY937874       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD548697       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTACAACATCCAG
FD965280       --> CCGGTAAGCAGCTTGAAGACGGCCGAACCCTAGCCGATTA..........
FD940413       --> ...................gGGCCGAACCCTAGCCGATTACAACATCCAG
EX748897       --> .........................AACCCTAGCCGATTACAACATCCAG

               251    -    301
UN17070        --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- AAAGAGTTTACTCTCCACCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD573637       <-- AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EV530396       <-- AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD554088       <-- AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EW720594       <-- AAAGAGTTTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EY902542       <-- AAAGAGTCTACTCTCCACCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD945296       <-- .....................................GTGGCCCCATGAT
EV538516       --> AAAGAGTCTACTCTCCACCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD569422       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EV525727       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EW716973       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EX749238       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD949680       --> ..................................................
FD989455       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EV550355       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EX903866       --> AAAGAGTCTACTCTCCACCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EY906131       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EY898449       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EY906344       --> AAAGAGTCTACTCTCCACCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EY937874       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD548697       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
FD965280       --> ..................................................
FD940413       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT
EX748897       --> AAAGAGTCTACTCTCCATCTCGTCTTGAGGCTCAGAGGTGGCACCATGAT

               301    -    351
UN17070        --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. maritimus
FD554088       <-- CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. landra
EW720594       <-- CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus var. oleiformis
EY902542       <-- CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus cv Early Scarlet Globe
EV538516       --> CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus cv Early Scarlet Globe
EV525727       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. maritimus
EW716973       --> CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus var. oleiformis
EX749238       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. maritimus
FD949680       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD989455       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. landra
EV550355       --> CAAGGTCAAGACTCTCACCGGAAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. maritimus
EY906344       --> CAAGGTCAAGACCCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus cv Early Scarlet Globe
FD548697       --> CAAGGTCAAGACTCTCACCGGAAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD940413       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus sativus var. oleiformis
EX748897       --> CAAGGTCAAGACTCTCACCGGCAAAGAAATCGAGATTGATATCGAACCAA  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN17070        --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD573637       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EV530396       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD554088       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EW720594       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EY902542       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD945296       <-- CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EV538516       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD569422       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EV525727       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EW716973       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGA.......
EX749238       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAGAGAAGGCATC
FD949680       --> ..................................................
FD989455       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EV550355       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EX903866       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EY906131       --> CCGACACTATTGACCGTATCAAGGAACTTGTCGAAGAGAAAGAAGGCATC
EY898449       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EY906344       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EY937874       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD548697       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
FD965280       --> ..................................................
FD940413       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC
EX748897       --> CCGACACTATTGACCGTATCAAGGAACGTGTCGAAGAGAAAGAAGGCATC

               401    -    451
UN17070        --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD573637       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EV530396       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCGGCTTGCTGATGA
FD554088       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EW720594       <-- CCTCCCGTCCAACAAAGGCTTATTTATGCAGGGAAGCAGCTTGCTGATGA
EY902542       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD945296       <-- CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EV538516       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD569422       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EV525727       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCGGCTTGCTGATGA
EW716973       --> ..................................................
EX749238       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD949680       --> ..................................................
FD989455       --> CCTCCCGTCCAACAACGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EV550355       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EX903866       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EY906131       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EY898449       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EY906344       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EY937874       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD548697       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
FD965280       --> ..................................................
FD940413       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA
EX748897       --> CCTCCCGTCCAACAAAGGCTTATCTATGCAGGGAAGCAGCTTGCTGATGA

               451    -    501
UN17070        --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- CAAAACGGCCAAAGATTACAACATAGAGGGGGGCT...............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD573637       <-- CAAAACTGCCAAAGACTACAACATAGAGGATGGCTCTGTTCTTCATTTGG  Raphanus sativus cv Early Scarlet Globe
EV530396       <-- CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. maritimus
FD554088       <-- CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. landra
EW720594       <-- CAAAACGGCCAAAGATTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus sativus var. oleiformis
EY902542       <-- CAAAACGGCCAAAGATTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD945296       <-- CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGT...........  Raphanus sativus cv Early Scarlet Globe
EV538516       --> CAAAACGGCCAAAGATTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569422       --> CAAAACTGCCAAAGACTACAACATAGAGGATGGCTCTGTTCTTCATTTGG  Raphanus sativus cv Early Scarlet Globe
EV525727       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. maritimus
EW716973       --> ..................................................  Raphanus sativus var. oleiformis
EX749238       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. maritimus
FD949680       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD989455       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. landra
EV550355       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX903866       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus sativus cv Rat-Tail Radish #3870
EY906131       --> CAAAACGGCCAAAGATTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898449       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. maritimus
EY906344       --> CAAAACGGCCAAAGATTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY937874       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus sativus cv Early Scarlet Globe
FD548697       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD965280       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD940413       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus sativus var. oleiformis
EX748897       --> CAAAACTGCCAAAGACTACAACATAGAGGGTGGCTCTGTTCTTCATTTGG  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN17070        --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- ..................................................
FD573637       <-- TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EV530396       <-- TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
FD554088       <-- TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EW720594       <-- TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EY902542       <-- TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAGAACATGCATCTT
FD945296       <-- ..................................................
EV538516       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAGAACATGCATCTT
FD569422       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EV525727       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EW716973       --> ..................................................
EX749238       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
FD949680       --> ..................................................
FD989455       --> TTCTTGCTCTTAGGGTTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EV550355       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EX903866       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EY906131       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAGAACATGCATCTT
EY898449       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EY906344       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAGAACATGCATCTT
EY937874       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
FD548697       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
FD965280       --> ..................................................
FD940413       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT
EX748897       --> TTCTTGCTCTTAGGGGTGGTGGTTGTGTTTGAAATCAAAACATGTATCTT

               551    -    601
UN17070        --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- ..................................................
FD573637       <-- TCTCTTCTTATCTATATTTGAAA-TATTTATCATCCTTTCTCTGATTGTG
EV530396       <-- TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
FD554088       <-- TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EW720594       <-- TCTCTTTTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EY902542       <-- TCTTTTTTTATCTATATTTGAAA-TCTTTATCATGTTTTCTCTGATTGTG
FD945296       <-- ..................................................
EV538516       --> TCTTTTCTTATCTATATTTGAAA-TCTTTATCATGTTTTCTCTGATTGTG
FD569422       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCCTTTCTCTGATTGTG
EV525727       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EW716973       --> ..................................................
EX749238       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
FD949680       --> ..................................................
FD989455       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EV550355       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EX903866       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EY906131       --> TCct..............................................
EY898449       --> TCTCTTCTTATCTATATTTTAAAATATTTATCATCTTTTCTCTGATTGTG
EY906344       --> TCTTTTCTTATCTATATTTGAAA-TCTTTATCATGTTTTCTCTGATTGTG
EY937874       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
FD548697       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
FD965280       --> ..................................................
FD940413       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG
EX748897       --> TCTCTTCTTATCTATATTTGAAA-TATTTATCATCTTTTCTCTGATTGTG

               601    -    651
UN17070        --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- ..................................................
FD573637       <-- TTTTGGACTTCATATGAACCCCCTGATTTGAT..................
EV530396       <-- TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD554088       <-- TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EW720594       <-- TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EY902542       <-- TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD945296       <-- ..................................................
EV538516       --> TTTTGGACTCCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD569422       --> TTTTGGACTTCATATGAACCCCCTGATTTGAT..................
EV525727       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EW716973       --> ..................................................
EX749238       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD949680       --> ..................................................
FD989455       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EV550355       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EX903866       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EY906131       --> ..................................................
EY898449       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EY906344       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EY937874       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD548697       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
FD965280       --> ..................................................
FD940413       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT
EX748897       --> TTTTGGACTTCATATGAACCCCCTGATTTGATATGATGATATTGGCATGT

               651    -    701
UN17070        --> TGGTTATATATTGTCTCGTGGATAATGCATCTATCATTGAATAAATTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542505       <-- ..................................................
FD573637       <-- ..................................................
EV530396       <-- TGGTTATATATTGTCTCGTGGATAAaac......................
FD554088       <-- TGGc..............................................
EW720594       <-- TGGTT.............................................
EY902542       <-- TGGTTATA--TTGTCTCGTGGATAATGCATCTATCATTGAATAAATTACA
FD945296       <-- ..................................................
EV538516       --> TGGgc.............................................
FD569422       --> ..................................................
EV525727       --> TGGTTATATATTGTCTCGTGGATAAaac......................
EW716973       --> ..................................................
EX749238       --> TGGTTATATATCGTCTCGTGGATAATGCATCaaa................
FD949680       --> ..................................................
FD989455       --> TGGTTATATATTGTCTCGTGGATAATGCATCTATCATTGAATAAATTACt
EV550355       --> TGGTT.............................................
EX903866       --> TGG...............................................
EY906131       --> ..................................................
EY898449       --> TGGTTAaaa.........................................
EY906344       --> TGGTTATAT--TGTCTCGTGGATAATGCATCTATCATTGAATAAATTACA
EY937874       --> TGGTTATATATTGTCTCGTGGATAATGCATCTATCATTGAATAAATTACt
FD548697       --> TGG...............................................
FD965280       --> ..................................................
FD940413       --> TGGTTcaaaa........................................
EX748897       --> TGGTTAT...........................................

               701    -    751
UN17070        --> CACTTCTATTAAAA
                   ~~~~~~~~~~~~~~
EV542505       <-- ..............
FD573637       <-- ..............
EV530396       <-- ..............
FD554088       <-- ..............
EW720594       <-- ..............
EY902542       <-- CACTTCTATT....
FD945296       <-- ..............
EV538516       --> ..............
FD569422       --> ..............
EV525727       --> ..............
EW716973       --> ..............
EX749238       --> ..............
FD949680       --> ..............
FD989455       --> cttctatt......
EV550355       --> ..............
EX903866       --> ..............
EY906131       --> ..............
EY898449       --> ..............
EY906344       --> CACTTCTATTAAAA
EY937874       --> cttcta........
FD548697       --> ..............
FD965280       --> ..............
FD940413       --> ..............
EX748897       --> ..............