RadishBase

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Alignment for radish unigene UN17077

               1      -     51
UN17077        --> GGGCTTTGATCAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD553384       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> GGGCTTTGATCAGGTTTCTTGTCTGAACAA----TGGCGAGTCTCTCTGT  Raphanus raphanistrum subsp. landra
FD980423       --> GGGCTTTGATCAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> .....ggGATCAGGTTTCTTGTCTGAACAA----TGGCGAGTCTCTCTGT  Raphanus raphanistrum subsp. maritimus
EX754685       --> .........ggAGGTTTCTTGTCTGAACAAACAATGGCGAGTCTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> .........ggAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> .........ggAGGTTTCTTGTCTGAACAAACAATGGCGAGTCTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ........gggAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> .........ggAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> .........ggAGGTTTCTTGTCTGAACAA----TGGCGAGTGTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> .........ggAGGTTTCTTGTCTGAACAA----TGGCGAGTTTCTCTGT  Raphanus raphanistrum subsp. maritimus
FD973812       --> ......................ggaAACAA----TGGCGAGTCTCTCTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527936       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535829       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN17077        --> ACGAACTCCAAGTTCCATTCAGCTTCTTCGTTCCTCTGTTTCTCCTATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD553384       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ACGAACTCCAAGTTCCATTCAGATTCTTCGTTCCTCTGTTTCTCCTACGT  Raphanus raphanistrum subsp. landra
FD980423       --> ACGAACTCCAAGTTCCCTTCAGCTTCTTCGTTCCTCTGTTTCTCCTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ACGAACTCCAAGTTCCATTCAGATTCTTCGTTCCTCTGTTTCTCCTACGT  Raphanus raphanistrum subsp. maritimus
EX754685       --> ACGAACTCCAAGTTCCATTCAGCTTCTTCGTTCCTCTGTTTCTCCTATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> ACGAACTCCAAGTTCCCTTCAGCTTCTTCGTTCCTCTGTTTCTCCTATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ACGAACTCCAAGTTCCATTCAGCTTCTTCGTTCCTCTGTTTCTCCTATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ACGAACTCCAAGTTCCCTTCAGCTTCTTCGTTCCTCTGTTTCTCCTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ACGAACTCCAAGTTCCCTTCAGCTTCTTCGTTCCTCTGTTTCTCCTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ACGAACTCCAAGTTCCCTTCAGCTTCTTCGTTCCTCTGTTTCTCCTATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ACGAACTCCAAGTTCCATTCAGATTCTTCGTTCCTCTGTTTCTCCTACGT  Raphanus raphanistrum subsp. maritimus
FD973812       --> ACGAACTCCAAGTTCCATTCAGCTTCTTCGTTCCTCTGTTTCTCCTATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527936       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535829       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN17077        --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATC-T--TCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD553384       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD976299       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTATCATCATCCTCCATC  Raphanus raphanistrum subsp. landra
FD980423       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTATCATCATCCTCCATC  Raphanus raphanistrum subsp. maritimus
EX754685       --> GCTCGAAACCCTTGTTTCGATCATCATCGAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> GCTCGAAACCCTTGTTTCGATCATCATCGAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> GCTCGAAACCCTTGTTTCGATCATCATCGAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> GCTCGAAACCCTTGTTTCGATCATCATCTAGCTTATCATCATCCTCCATC  Raphanus raphanistrum subsp. maritimus
FD973812       --> GCTCGAAACCCTTGTTTCGATCATCATCGAGCTTTTCATC-T--TCCATC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527936       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535829       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN17077        --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTAATCTCTAGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ........................................TCTCTAGACC
EX753233       <-- ..................................................
FD553384       <-- ..................................................
FD976299       <-- ..................................................
FD547919       <-- ..................................................
EV541940       <-- ..................................................
EY904297       <-- ..................................................
FD959089       <-- ..................................................
EY910767       <-- ..................................................
EY909423       <-- ..................................................
FD961545       <-- ..................................................
FD969434       <-- ..................................................
FD557237       --> GTTTCTGCTCCTTTCGCCAGATTAAAATCCAATTCCCTAATCTCTAGACC
FD980423       --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTGATCTCTAGACC
EX749573       --> GTTTCTGCTCCTTTCGCCAGATTAAAATCCAATTCCCTAATCTCTAGACC
EX754685       --> GCTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTAATCTCTAGACC
EX765547       --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATCCCCTAATCTCTAGACC
EY908629       --> GTTTCTACTCCTTTCGCCCGATCAAAATCCAATTCCCTAATCTCTAGACC
EY913135       --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTGATCTCTAGACC
EY914796       --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTGATCTCTAGACC
FD552087       --> GTTTCTACTCCTTTCGCCAGATCAAAATCCAATTCCCTGATCTCTAGACC
FD962571       --> GTTTCTGCTCCTTTCGCCAGATTAAAATCCAATTCCCTAATCTCTAGACC
FD973812       --> GTTTCTACTCCTTTCGCCCGATCAAAATCCAATTCCCTAATCTCTAGACC
EV537771       --> ..................................................
EY897165       --> ..................................................
EV527936       --> ..................................................
FD535829       --> ..................................................

               201    -    251
UN17077        --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EX753233       <-- ...TGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD553384       <-- ...TGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD976299       <-- ...TGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD547919       <-- ............CGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EV541940       <-- .........................TCCACGGGAGTAGCTGATCCCGTCA
EY904297       <-- .............................................CGTCA
FD959089       <-- .................................................A
EY910767       <-- ..................................................
EY909423       <-- ..................................................
FD961545       <-- ..................................................
FD969434       <-- ..................................................
FD557237       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD980423       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EX749573       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EX754685       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EX765547       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EY908629       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EY913135       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EY914796       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD552087       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD962571       --> TCGTGTTGTTCTCACGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
FD973812       --> TCGTGTTGTTCTCGCGAGAGCAGCTTCCACGGGAGTAGCTGATCCCGTCA
EV537771       --> ..................................................
EY897165       --> ..................................................
EV527936       --> ..................................................
FD535829       --> ..................................................

               251    -    301
UN17077        --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. maritimus
FD553384       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. landra
FD976299       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTATCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- CTGAGTACAAAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. landra
FD980423       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. maritimus
EX754685       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> CTGAGTACAGAGAAGACATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTATCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> CTGAGTACAAAGAAGATATCGGTGAGATACTCGGGGATGTCTCCATTTTT  Raphanus raphanistrum subsp. maritimus
FD973812       --> CTGAGTACAGAGAAGATATCGGTGAGATACTCGGGGATGTATCCATCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ...............................................TTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527936       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535829       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               301    -    351
UN17077        --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- ACTGCATCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. maritimus
FD553384       <-- ACTGCATCAGACCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. landra
FD976299       <-- ACTGCTTCGGGCCAGTCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- ACTGCTTCAGGCCAGCCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- ACTGCATCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ..................GTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ACTGCATCAGACCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. landra
FD980423       --> ACTGCTTCGGGCCAGTCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ACTGCATCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. maritimus
EX754685       --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ACTGCTTCAGGCCAGCCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ACTGCTTCAGGCCAGCCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ACTGCTTCAGGCCAGCCAGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ACTGCATCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. maritimus
FD973812       --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ACTGCTTCAGGCCAGCCCGTGAAGTTCAGCAATCTCTTGGATCAGAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527936       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD535829       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN17077        --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EX753233       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD553384       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD976299       <-- TGGAGTTTCTGCTGGTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD547919       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EV541940       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGAATGCGTTTGCTGTT
EY904297       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD959089       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EY910767       <-- TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EY909423       <-- ..................................................
FD961545       <-- ..................................................
FD969434       <-- ..................................................
FD557237       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD980423       --> TGGAGTTTCTGCTGGTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EX749573       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EX754685       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EX765547       --> TGGAGTTTCTGCTGTTGTGCTTTCGAGGCATTTCGGATGCGTTTGCTGTT
EY908629       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EY913135       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EY914796       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD552087       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD962571       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
FD973812       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGGATGCGTTTGCTGTT
EV537771       --> TGGAGTTTCTGCTGTTGTGCTTTTGAGGCATTTCGAATGCGTTTGCTGTT
EY897165       --> ..................................................
EV527936       --> ..................................................
FD535829       --> ..................................................

               401    -    451
UN17077        --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EX753233       <-- GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD553384       <-- GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD976299       <-- GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD547919       <-- GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EV541940       <-- GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EY904297       <-- GGGAGCTTGCTACTGCATTGAGAGAGGCGAAGCCGCGGTTTGATGCGGCC
FD959089       <-- GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EY910767       <-- GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGGGGTTTGATGCGGCC
EY909423       <-- ...............CATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD961545       <-- ...............CATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD969434       <-- .............................aagCCGCGGTTTGATGCGGCC
FD557237       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD980423       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTT..........
EX749573       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EX754685       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EX765547       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EY908629       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAGCCGCGGTTTGATGCGGCC
EY913135       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EY914796       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGGGGTTTGATGCGGCC
FD552087       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD962571       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
FD973812       --> GGGAGCTTGCTACTGCATTGAGAGAGGCGAAGCCGCGGTTTGATGCGGCC
EV537771       --> GGGAACTTGCTACTGCATTGAGAGAGGCGAAACCGCGGTTTGATGCGGCC
EY897165       --> ..................................................
EV527936       --> ..................................................
FD535829       --> ..................................................

               451    -    501
UN17077        --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EX753233       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD553384       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD976299       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATAAGGCTCGTAT
FD547919       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATTAGGCTCGTAT
EV541940       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EY904297       <-- GGTGTTAAACTGGTGGCTGTTGGTGTCGGAACTCCTGATAAGGCTCGTAT
FD959089       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EY910767       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATAAGGCTCGTAT
EY909423       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATAAGGCTCGTAT
FD961545       <-- GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD969434       <-- GGTGTTAAACTGGTGGCTGTTGGTGTCGGAACTCCTGATAAGGCTCGTAT
FD557237       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD980423       --> ..................................................
EX749573       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EX754685       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EX765547       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EY908629       --> GGTGTTAAACTGGTGGCTGTTGGTGTCGGAACTCCTGATAAGGCTCGTAT
EY913135       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATAAGGCTCGTAT
EY914796       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATAAGGCTCGTAT
FD552087       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACTCCTGATTAGGCTCGTAT
FD962571       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD973812       --> GGTGTTAAACTGGTGGCTGTTGGTGTCGGAACTCCTGATAAGGCTCGTAT
EV537771       --> GGTGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EY897165       --> ..TGTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
EV527936       --> ...GTTAAACTGGTGGCTGTTGGTGTTGGAACGCCTGATAAGGCTCGTAT
FD535829       --> ...GTTAAACTGGTGGCTGTTTGTGTTGGAACGCCTGATAAGGCTCGTAT

               501    -    551
UN17077        --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
FD553384       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. landra
FD976299       <-- ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
EY910767       <-- ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
FD969434       <-- ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. landra
FD980423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
EX754685       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ACTCGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
FD973812       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCGGATCCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ACTTGCATCTCGGTTACCTTT.............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
EV527936       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus
FD535829       --> ACTTGCATCTCGGTTACCTTTTCCAATGGAATGTCTTTACGCCGATCCTG  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN17077        --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EX753233       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTATGGTTTAGGCCGTACT
FD553384       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD976299       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD547919       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EV541940       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EY904297       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD959089       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EY910767       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EY909423       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD961545       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD969434       <-- AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD557237       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD980423       --> ..................................................
EX749573       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTATGGTTTAGGCCGTACT
EX754685       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EX765547       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EY908629       --> AG................................................
EY913135       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EY914796       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTACGCCGTACT
FD552087       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD962571       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD973812       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EV537771       --> ..................................................
EY897165       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
EV527936       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT
FD535829       --> AGCGCAAGGCGTATGATGTTCTTGGTTTATACTACGGTTTAGGCCGTACT

               601    -    651
UN17077        --> TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
EX753233       <-- TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
FD553384       <-- TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
FD976299       <-- TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
FD547919       <-- TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
EV541940       <-- TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
EY904297       <-- TTCTTCAACCCAGCTAGTAAAAAAGTCTTCTCACGATTTGATGAGTTACG
FD959089       <-- TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
EY910767       <-- TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
EY909423       <-- TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
FD961545       <-- TTCTTCAACCCAGGTAGTAAAAAAATCTCCTCACGATTTGATGAGTTACG
FD969434       <-- TTCTTCAACCCAGCTAGTAAAAAAGTCTTCTCACGATTTGATGAGTTACG
FD557237       --> TTCTTCAACCCAGCTAGTAAAAAA-TCTTCTCACGATTTGATGAGTTACG
FD980423       --> ..................................................
EX749573       --> TTCTTCAACCCAGCTAGTAAAAAA-TCTTCTCACGATTTGATGAGTTACG
EX754685       --> TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
EX765547       --> TTCTTCAACCCAGCTAGTAAAAAA-TCTTCTCACGATTTGATGAGTTACG
EY908629       --> ..................................................
EY913135       --> TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
EY914796       --> TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
FD552087       --> TTCTTCAACCCAGCTAGTACAAAAATCTTCTCACGATTTGATGAGTTACG
FD962571       --> TTCTTCAACCCAGCTAG.................................
FD973812       --> TTCTTCAACCCAGCTAGTAAAAAAGTCTTCTCACGATTTGATGAGTTACG
EV537771       --> ..................................................
EY897165       --> TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
EV527936       --> TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG
FD535829       --> TTCTTCAACCCAGCTAGTAAAAAAATCTTCTCACGATTTGATGAGTTACG

               651    -    701
UN17077        --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- AGAAGCTGCAAAGAACTGCACCATAAAAGCCACTCCTGAAGACAGAAGTA
EX753233       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD553384       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCGCTCCTGAAGACAGAAGCA
FD976299       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD547919       <-- AGAAGCTGCAAAGAACTACACCATAAAATCCACTCCTGAAGACAGAAGCA
EV541940       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGTA
EY904297       <-- AGAAGCCGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD959089       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EY910767       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EY909423       <-- AGAAGCTGCAAAGAACTACACCGTAAAAGCCACTCCTGAAGACAGAAGCA
FD961545       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD969434       <-- AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD557237       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCGCTCCTGAAGACAGAAGCA
FD980423       --> ..................................................
EX749573       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EX754685       --> AGAAGCTGCAAAGAACTGCACCATAAAAGCCACTCCTGAAGACAGAAGTA
EX765547       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EY908629       --> ..................................................
EY913135       --> AGAAGCTGCAAAGAACTACACCGTAAAAGCCACTCCTGAAGACAGAAGCA
EY914796       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGA-GACAGAAGCA
FD552087       --> AGAAGCTGCAAAGAACTACACCATAAAATCCACTCCTGAAGACAGAAGCA
FD962571       --> ..................................................
FD973812       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EV537771       --> ..................................................
EY897165       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
EV527936       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA
FD535829       --> AGAAGCTGCAAAGAACTACACCATAAAAGCCACTCCTGAAGACAGAAGCA

               701    -    751
UN17077        --> GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EX753233       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD553384       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD976299       <-- GTGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD547919       <-- GTGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EV541940       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EY904297       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD959089       <-- GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EY910767       <-- GTGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EY909423       <-- GTGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD961545       <-- GCGTGTTACAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD969434       <-- ACGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD557237       --> GCGTGTTGCA........................................
FD980423       --> ..................................................
EX749573       --> GCGTGTgc..........................................
EX754685       --> GCGTGTTGCA........................................
EX765547       --> GCGTGTTGCAACAGG-AGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EY908629       --> ..................................................
EY913135       --> GTGTGTTGCA........................................
EY914796       --> GTGTGTTGCAACAGG-AGGTACGTTTGTTTcag.................
FD552087       --> GTGTGTTGCA........................................
FD962571       --> ..................................................
FD973812       --> ACGTGTTGCA........................................
EV537771       --> ..................................................
EY897165       --> GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
EV527936       --> GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG
FD535829       --> GCGTGTTGCAACAGGGAGGTACGTTTGTTTTCAGAGGCAAGAAGCTCTTG

               751    -    801
UN17077        --> TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGATGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGATGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus
FD553384       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. landra
FD976299       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCACCCATCTCTTGATGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- TATGGTCGAAAAGGCGAAGGTACTGGTGATCACCCATCTCTTGATGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGATGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- TATGGTCGAAAAGGCGAAGGTACTGGTGATCATCCATCTCTAGATGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus
EY910767       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCACCCATCTCTTGATGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCACCCATCTCTTGATGATGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus
FD969434       <-- TATGGTCGAAAAGACGAAGGTACTGGCGATCATCCATCTCTAGATGATGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD980423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX754685       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> TATGGTCGAAAgac....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD973812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus
EV527936       --> TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus
FD535829       --> TATGGTCGAAAAGACGAAGGTACTGGTGATCATCCATCTCTAGGTGATGT  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN17077        --> TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus
FD553384       <-- TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. landra
FD976299       <-- TCTCAATGTCTGCTGCACGAGCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- TCTCAATGTCTGCTGCACGAGCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- TCTCAATGTCTGCTGCACGACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus
EY910767       <-- TCTCAATGTCTGCTGCACGAGCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- TCTCAATGTCTGCTGCACGAGCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- TCTCAATGTTTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus
FD969434       <-- TCTCAATGTTTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD980423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX754685       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD973812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus
EV527936       --> TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus
FD535829       --> TCTCAATGTCTGCTGCACAACCCAAGCCACTGTTGCTTGAACATTGGTTT  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN17077        --> AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EX753233       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD553384       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD976299       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD547919       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EV541940       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EY904297       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD959089       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EY910767       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EY909423       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD961545       <-- AAAGTCTTTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD969434       <-- AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD557237       --> ..................................................
FD980423       --> ..................................................
EX749573       --> ..................................................
EX754685       --> ..................................................
EX765547       --> ..................................................
EY908629       --> ..................................................
EY913135       --> ..................................................
EY914796       --> ..................................................
FD552087       --> ..................................................
FD962571       --> ..................................................
FD973812       --> ..................................................
EV537771       --> ..................................................
EY897165       --> AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
EV527936       --> AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC
FD535829       --> AAAGTCTCTCTGGTCTGGTTTAATGCTTACATCACTGTAATAATTGTAGC

               901    -    951
UN17077        --> TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- TATTAATACATGTTTTTAAGACGTTAATAAATTATAAATAGg........  Raphanus raphanistrum subsp. raphanistrum (MS)
EX753233       <-- TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus
FD553384       <-- TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. landra
FD976299       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATGGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD547919       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV541940       <-- TATTAATACATGTTTTTAAGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY904297       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD959089       <-- TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus
EY910767       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY909423       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD961545       <-- TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus
FD969434       <-- TATTAATACATGTTTTTACGACGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557237       --> ..................................................  Raphanus raphanistrum subsp. landra
FD980423       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX749573       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EX754685       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX765547       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY908629       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY913135       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914796       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD552087       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD962571       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD973812       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537771       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897165       --> TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus
EV527936       --> TATTAATACATGTTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus
FD535829       --> TATTAATACATGCTTTTACG-CGTTAATAAATTATAAATAGTATACATTT  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN17077        --> GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ..................................................
EX753233       <-- GAACC.............................................
FD553384       <-- GAACC.............................................
FD976299       <-- GAACC.............................................
FD547919       <-- GAACC.............................................
EV541940       <-- GAACCAC...........................................
EY904297       <-- GAACC.............................................
FD959089       <-- GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGTAA
EY910767       <-- GAACC.............................................
EY909423       <-- GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGg..
FD961545       <-- GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGTAA
FD969434       <-- GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGg..
FD557237       --> ..................................................
FD980423       --> ..................................................
EX749573       --> ..................................................
EX754685       --> ..................................................
EX765547       --> ..................................................
EY908629       --> ..................................................
EY913135       --> ..................................................
EY914796       --> ..................................................
FD552087       --> ..................................................
FD962571       --> ..................................................
FD973812       --> ..................................................
EV537771       --> ..................................................
EY897165       --> GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTATGTAA
EV527936       --> GAACCACACAAGTTTATAGTGTAAAGATAAGATAATAGTTTGGTAT....
FD535829       --> GGACCACACAAGTTTATAGTTTAAAGATAAGATTATAGTTTGGTATGTAA

               1001   -   1051
UN17077        --> TTGGAGTAATTTGTTTTGATTGTCTTTTTCAGTAGTGCGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX758961       <-- ...........................................
EX753233       <-- ...........................................
FD553384       <-- ...........................................
FD976299       <-- ...........................................
FD547919       <-- ...........................................
EV541940       <-- ...........................................
EY904297       <-- ...........................................
FD959089       <-- TTGGAGTAATTTGTTTTGATTGac...................
EY910767       <-- ...........................................
EY909423       <-- ...........................................
FD961545       <-- TTGGAGTAATTTGTTTTGg........................
FD969434       <-- ...........................................
FD557237       --> ...........................................
FD980423       --> ...........................................
EX749573       --> ...........................................
EX754685       --> ...........................................
EX765547       --> ...........................................
EY908629       --> ...........................................
EY913135       --> ...........................................
EY914796       --> ...........................................
FD552087       --> ...........................................
FD962571       --> ...........................................
FD973812       --> ...........................................
EV537771       --> ...........................................
EY897165       --> TTGGAGTAATTTGTTTTGATTGTCTTTTTCAGTAGTGCGTTTG
EV527936       --> ...........................................
FD535829       --> TTGGAGTAATTTGTTTTGATTGTCTTTTTCAGTAGTGCGTT..