1      -     51
UN17098        --> GGTAGGGCAGAAGAAGAACAGAGAGATTCAATGGAGAGAGTGAATCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ..................................................
EY937092       <-- ..................................................
FD564973       <-- ..................................................
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> GGTAGGGCAGAAGAAGAACAGAGAGATTCAATGGAGAGAGTGAATCAAAC
FD560595       --> .........ggAGAAGAACAGAGAGATTCAATGGAGAGAGTGAATCAAAC
FD549533       --> ...........gGAAGAACAGAGAGATTCGATGGAGAGAGTGAATCAAAC
FD973218       --> ...............ggACAGAGAGATTCAATGGAGAGAGTGAATCAAAC
EY898182       --> ..................................................

               51     -    101
UN17098        --> ATTCTTCTTATCGCATGGCTCTCCCACATTGAGCATTGATGATAAGTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ..................................................
EY937092       <-- ..................................................
FD564973       <-- ..................................................
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> ATTCTTCTTATCGCATGGCTCTCCCACACTGTGCATTGATGATAAATTAG
FD560595       --> ATTCTTCTTGTCGCATGGCTCTCCCACATTGAGCATTGATGATAAGTTAG
FD549533       --> ATTCTTCTTATCGCATGGCTCTCCCACATTGAGCATTGATGACAAGTTAG
FD973218       --> ATTCTTCTTATCGCATGGATCTCCCACATTGAGCATTGATGATAAGTTAG
EY898182       --> ..................................................

               101    -    151
UN17098        --> AAGCAAGACAGTTCTTCCAATCATGGTCGGACAAAGTCTTTCAACACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ..................................................
EY937092       <-- ..................................................
FD564973       <-- ..................................................
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> AAGCAAGACAGTTCTTCCAATCATGGTCGGACAAAGTCTTTCAACACAAA
FD560595       --> AAGCAAGACAATTCTTCCAATCATGGTCGGACAAAGTCTTTCAACACAAA
FD549533       --> AAGCAAGACATTTCTTCCAATCATGGTCAGACAAAGTCTTTCAACACAAA
FD973218       --> AAGCAGGACAGTTCTTCCAATCATGGTCGGACAAAGTCTTTCAACACAAA
EY898182       --> ..................................................

               151    -    201
UN17098        --> CCCAAATCTATTTTAGTCATCTCTGCTCACTGGGACACCGAGTTTCCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ...........TTTAGTCATCTCTGCTCACTGGGACACCGAGTTTCCATC
EY937092       <-- ..................................................
FD564973       <-- ..................................................
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> CCCAAATCTATTTTAGTCATCTCTGCTCACTGGGACACCGAGTTTCCATC
FD560595       --> CCCAAATCTATTTTAGTCATCTCTGCTCACTGGGACACCGAGTTTCCATC
FD549533       --> CCCAAATCTATTTTAGTCATCTCTGCTCACTGGGACACCGAGTTTCCATC
FD973218       --> CCCAAATCTATTTTAGTCATCTCTGCCCACTGGGACACCGAGTTTCCATC
EY898182       --> ..................................................

               201    -    251
UN17098        --> CGTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAACTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- -GTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAACTTCC
EY937092       <-- ..................................................
FD564973       <-- ..................................................
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> AGTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAATTTCC
FD560595       --> AGTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAACTTCC
FD549533       --> CGTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAACTTCC
FD973218       --> CGTCAACACTGTTCCCCGCAACTCCACCATCCACGATTTCAATAACTTCC
EY898182       --> ..................................................

               251    -    301
UN17098        --> CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCTATTGAGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCCATTGAGCTG
EY937092       <-- ....TCCAATGTACAAGCTTAAGTATGAAGCACCAGGAGCTGTTGAGCTG
FD564973       <-- ....TCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCTGTTGAGCTG
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCTATTGAGCTG
FD560595       --> CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCTGTTGAGCTG
FD549533       --> CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGCCATTGAGCTG
FD973218       --> CTGATCCCATGTACAAGCTTAAGTATGAAGCACCAGGAGATATTGAGCTG
EY898182       --> ..................................................

               301    -    351
UN17098        --> GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
EY937092       <-- GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
FD564973       <-- GCGAAAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
FD968949       <-- ..................................................
EY894312       <-- ..................................................
FD938086       --> GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
FD560595       --> GCGAAAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
FD549533       --> GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
FD973218       --> GCGAGAAGGGTTAGAGAGTTGCTAATGGGAGGAGGAGGAATGAAGCGTGT
EY898182       --> ..................................................

               351    -    401
UN17098        --> TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937092       <-- TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCACTCA  Raphanus sativus cv Early Scarlet Globe
FD564973       <-- TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTCA  Raphanus sativus var. oleiformis
FD968949       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894312       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD938086       --> TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTCA  Raphanus sativus var. oleiformis
FD560595       --> TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTCA  Raphanus sativus var. oleiformis
FD549533       --> TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973218       --> TGATGAAGATACAGAGAGAGGACTTGATCATGGAGCTTGGGTTCCTCTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898182       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN17098        --> TGTTGATGTATCCTGAAGCAGATATACCGGTTTGTCAACTCTCTGTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- TGTTGATGTATCCTGAGGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937092       <-- TGTTGATGTATCCCGAGGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus sativus cv Early Scarlet Globe
FD564973       <-- TGTTGATGTATCCTGAAGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus sativus var. oleiformis
FD968949       <-- .............TGAAGCAGATATACCGGTTTGTCAACTTTCTGTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894312       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD938086       --> TGTTGATGTATCCTGAAGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus sativus var. oleiformis
FD560595       --> TGTTGATGTATCCTGAAGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus sativus var. oleiformis
FD549533       --> TGTTGATGTATCCTGAGGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973218       --> TGTTGATGTATCCTGAAGCAGATATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898182       --> ....................ggTATACCGGTTTGTCAACTCTCTGTTCAA  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN17098        --> TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- TCATCTCGAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
EY937092       <-- TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
FD564973       <-- TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
FD968949       <-- TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
EY894312       <-- ..................................................
FD938086       --> TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
FD560595       --> TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
FD549533       --> TCATCTCGAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
FD973218       --> TCATCTCAAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC
EY898182       --> TCATCTCGAACCGGGACTTACCATTACAACATGGGCAAAGCATTGGCTCC

               501    -    551
UN17098        --> ACTGAAAGAAGAAGGTGTTCTTATCATTGGATCTGGAAGTGCCACTCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ACTGAAAGAAGAAGGTGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937092       <-- ACTGAAAGAAGAAGGCGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus sativus cv Early Scarlet Globe
FD564973       <-- ACTGAAAGAAGAAGGCGTTTTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus sativus var. oleiformis
FD968949       <-- ACTGAAAGAAGAAGGTGTTTTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894312       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD938086       --> ACTGAAAGAAGAAGGCGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus sativus var. oleiformis
FD560595       --> ACTGAAAGAAGAAGGCGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus sativus var. oleiformis
FD549533       --> ACTGAAAGAAGAAGGTGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973218       --> ACTGAAAGAAGAAGGTGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898182       --> ACTGAAAGAAGAAGGTGTTCTTATCATTGGATCTGGAAGTGCCACTCATA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN17098        --> ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ACTTGAAGAAGCTTGACTTTAGTATCACTGGTGGATCAGCGGTTCCTTGG
EY937092       <-- ATTTGAAGAAGCTTGACTTTGGAATCACAGATGGATCAGCGGTTCCTTGG
FD564973       <-- ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
FD968949       <-- ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
EY894312       <-- ..................................................
FD938086       --> ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
FD560595       --> ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
FD549533       --> ACTTGAAGAAGCTTGACTTTAGTATCACTGGTGGATCAGCGGTTCCTTGG
FD973218       --> ATTTGAAGAAGCTTGACTTTAGTATCACTGATGGATCAGCGGTTCCTTGG
EY898182       --> ATTTGAAGAAGCTTGACTTTAGTATCACAGATGGATCAGCGGTTCCTTGG

               601    -    651
UN17098        --> GCTTTAGAGTTTGATCATTGGCTCAGAGACTCTCTCCTTCAAGGAAGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- GCTTTAGAGTTTGATCATTGGCTCAGAGACTCTCTCCTTCAAGGAAGGTA
EY937092       <-- GCTTTAGAGTTTGATCATTGGCTCAGAGACTCTCTCCTTCAAGGAAGGTA
FD564973       <-- GCTTTAGAGTTCGATCATTGGTTCAGAGACTCTTTCCTACAAGGAAGGTA
FD968949       <-- GCTTTAGAGTTTGATCATTGGGTCAGAGACTTTTTCCTTCAAGGAAGGTA
EY894312       <-- ................ATTGGCTCAGAGACTCTCTCCTTCAAGGAAGGTA
FD938086       --> GCTTTAGAGTTTGACCATTGGCTCAGAGACTCTCTCCTTCAAG-AAGGTA
FD560595       --> GCTTTAGAGTTCGATCATTGGCTCAGAGACTCTCTCCTACAAGAAAG-TA
FD549533       --> GCTTTAGAGTTTGATCATTGGCTCAGAGACTCTCTCCTTCAgg.......
FD973218       --> GCTTTAGAGTTTGATCATTGGGTCAGAGACTCTCTCCTTCAAGGAAGGTA
EY898182       --> GCTTTAGAGTTCGATCATTGGCTCAGAGACTCTCTCCTTCAAGGAAGGTA

               651    -    701
UN17098        --> TGGAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- TGAAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY937092       <-- TGAAGATGTGAATGAGTAGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus sativus cv Early Scarlet Globe
FD564973       <-- TGGAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus sativus var. oleiformis
FD968949       <-- TGAAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY894312       <-- TGGAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus raphanistrum subsp. maritimus
FD938086       --> TGGAGATGTGA-TGAGTGGGAAGAGAA-GCTCCAAATGCGAAA-TGGCAC  Raphanus sativus var. oleiformis
FD560595       --> TGGAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus sativus var. oleiformis
FD549533       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD973218       --> TGAAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY898182       --> TGGAGATGTGAATGAGTGGGAAGAGAAAGCTCCAAATGCGAAAATGGCAC  Raphanus raphanistrum subsp. maritimus

               701    -    751
UN17098        --> ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCAGCT
EY937092       <-- ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCAGCT
FD564973       <-- ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCAGCT
FD968949       <-- ATCCATGGCCAGAGCATTTTTACCCATTACACGTTGCAATGGGTGCAGCT
EY894312       <-- ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCGGCT
FD938086       --> ATCCATGGC-AGAGCATTct..............................
FD560595       --> ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCAGCT
FD549533       --> ..................................................
FD973218       --> ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATG.........
EY898182       --> ATCCATGGCCAGAGCATTTCTACCCATTACACGTTGCAATGGGTGCGGCT

               751    -    801
UN17098        --> GGTG---ATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGCAACATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- GGTG---ATGACGCCAAGGCAGAGCAAATCCACGCAAGCTGGCAACATGG
EY937092       <-- GGTG---ATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGCAACATGG
FD564973       <-- GGTGGTGATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGGAACTTGG
FD968949       <-- AGTG---ATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGCAACATGG
EY894312       <-- GGTG---ATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGCAACATGG
FD938086       --> ..................................................
FD560595       --> GGTG---GTGAtga....................................
FD549533       --> ..................................................
FD973218       --> ..................................................
EY898182       --> GGTG---ATGACGCCAAGGCAGAGCAAATCCACACAAGCTGGCAACATGG

               801    -    851
UN17098        --> GACTCTGTCTTATTCTTCTTATAGCTTCACTTCTTCCCTTTGAAACATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- GACTCTGTCTTATTCTTCTTATAGCTTCACTTCTTCCCTTTGAAACATTG
EY937092       <-- GACTCTGTCTTATTCTTCTTATAGCTTCACTTCTTCCCTTTGAAACATCG
FD564973       <-- GACTCTGTCTTATTCTTCTTATAGCTTCACCTCTTCCCTTTGAAACATTG
FD968949       <-- GACTCTGTTTTAT.....................................
EY894312       <-- GACTCTGTCTTATTCTTTTTATAGCTTCACTTCTTCCCTTTGAAACATTG
FD938086       --> ..................................................
FD560595       --> ..................................................
FD549533       --> ..................................................
FD973218       --> ..................................................
EY898182       --> GACTCTGTCTTATTCTTCTTATAGCTTCACTTCTTCCCTTTGAAACATTG

               851    -    901
UN17098        --> CATCTTTACCTCCTTTCACTTGCCGTGTGACTACTTT-AACGTAAGCACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- CATCTTTACCTCCTTTCACTTGCCGTGTGACTACTTT-AATGTAAGCACT
EY937092       <-- CATCTTTACCTCCTTTCACTTGCCGTGTGACTACTTT-AACGTAAGCACT
FD564973       <-- CATCTTTACCTCCTTTCACTTGCTGTGTGACTACTTTTAATGTAAGCACT
FD968949       <-- ..................................................
EY894312       <-- CATCTTTACCTCCTTTCACTTGCCGTGTGACTACTTT-AACGTAAGCACT
FD938086       --> ..................................................
FD560595       --> ..................................................
FD549533       --> ..................................................
FD973218       --> ..................................................
EY898182       --> CATCTTTACCTCCTTTCACTTGCCGTGTGACTACTTT-AACGTAAGCACT

               901    -    951
UN17098        --> GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA
EY937092       <-- GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA
FD564973       <-- GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA
FD968949       <-- ..................................................
EY894312       <-- GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA
FD938086       --> ..................................................
FD560595       --> ..................................................
FD549533       --> ..................................................
FD973218       --> ..................................................
EY898182       --> GTGTAAGGCTATATGGAGAAAGATCGAGAGTGTTATGTTCTCTGTATAAA

               951    -   1001
UN17098        --> TATGTAAT---GGCCAGTGTTGTGTAATGCAAGCAAGTGAAAAAATCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD545586       <-- TATGTAATAATGGCCAGTGTTGTGTAATGCAAGCAAGTGAAAAAAcg...
EY937092       <-- TATGTAAT---GGCCAGTGTTGTGTAATTCAAGCAAGTGAAAAAATCAGT
FD564973       <-- TATGTAAT---GGCCAGTGTTGTGTAATGCAAGCAAGc............
FD968949       <-- ..................................................
EY894312       <-- TATGTAAT---GGCCAGTGTTGTGTAATGCAAGC................
FD938086       --> ..................................................
FD560595       --> ..................................................
FD549533       --> ..................................................
FD973218       --> ..................................................
EY898182       --> TATGTAAT---GGCCAGTGTTGTGTAATGCAAGC................

               1001   -   1051
UN17098        --> TTCTCTCC
                   ~~~~~~~~
FD545586       <-- ........
EY937092       <-- TTCTCTCC
FD564973       <-- ........
FD968949       <-- ........
EY894312       <-- ........
FD938086       --> ........
FD560595       --> ........
FD549533       --> ........
FD973218       --> ........
EY898182       --> ........