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Alignment for radish unigene UN17106

               1      -     51
UN17106        --> GGACATAGGATTTTGGTTTCAGCTTTCTTCTCCTAAAAACCTCACACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................
EX751250       <-- ..................................................
FD567128       <-- ..................................................
FD581416       <-- ..................................................
FD577037       --> GGACATAGGATTTTGGTTTCAGCTTTCTTCTCCTAAAAACCTCACACACC
EY930648       --> .................gggAGCATTCTTCTCCTAAAAACCTCACACACC
FD563503       --> ........................ggCTTCTCCTAAAAACCTCACACACC
EX746949       --> ........................................ggacaccaaC
EX772641       --> ..........................................ggaccaaC
EV569133       --> ............................................gggtac
EV550390       --> ..................................................

               51     -    101
UN17106        --> AAC-AACAACAA--------ACGTGGGATGGGATCTCTTGTTCGTGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................
EX751250       <-- ..................................................
FD567128       <-- ..................................................
FD581416       <-- ..................................................
FD577037       --> AACCAACAACAACAAACGGTACGTGGGATGGGATCTCTTGTTCGTGAATG
EY930648       --> AAC-AACAACAA--------ACGTGGGATGGGATCTCTTGTTCGTGAATG
FD563503       --> AAC-AACAACAA--------ACGTGGGATGGGATCTCTTGTTCGTGAATG
EX746949       --> AAC-AACAACAA--------ACGTGGGATGGGATCTCTTGTTCGTGAATG
EX772641       --> AAC-AACAACAA--------ACGTGGGATGGGATCTCTTGTTCGTGGATG
EV569133       --> gttccttctgAA--------AAGTGGGATGGGATCCCTTGTTCGTGAATG
EV550390       --> ....................ACGTGGGATGGGATCTCTTGTTCGTGAATG

               101    -    151
UN17106        --> GGTTGGGTTTCAGCAGTTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................  Raphanus sativus var. oleiformis
EX751250       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567128       <-- ..................................................  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> GGTTGGGTTTCAGCAATTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> GGTTGGGTTTCAGCAATTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus sativus var. oleiformis
FD563503       --> GGTTGGGTTTCAGCAATTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus sativus var. oleiformis
EX746949       --> GGTTGGGTTTCAGCAGTTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus raphanistrum subsp. maritimus
EX772641       --> GGTTGGGTTTCAGCAGTTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus raphanistrum subsp. landra
EV569133       --> GGTTGGGTTTCAGCAGTTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus raphanistrum subsp. landra
EV550390       --> GGTTGGGTTTCAGCAGTTTCCAGCGGCAACCCAAGAAAAGTTAATTGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN17106        --> TCTTCTCCAAATTGAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................
EX751250       <-- ..................................................
FD567128       <-- ..................................................
FD581416       <-- ..................................................
FD577037       --> TCTTCTCCAAATTGAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
EY930648       --> TCTTCTCCAAATTAAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
FD563503       --> TCTTCTCCAAATTAAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
EX746949       --> TCTTCTCCAAATTGAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
EX772641       --> TCTTCTCCAAATTGA-GCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
EV569133       --> TCTTCTCCAAATTGAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA
EV550390       --> TCTTCTCCAAATTGAAGCAAAAGGACATGAACTCTCTGACAGTTGTTGTA

               201    -    251
UN17106        --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTTTAATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................  Raphanus sativus var. oleiformis
EX751250       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567128       <-- ..................................................  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACCGTCAACTCTCTTATCGG  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTCTTATCGG  Raphanus sativus var. oleiformis
FD563503       --> ATGGGTAAAGGCGGTGTCGGAAA-TCGTCCACTGTCAACTCTCTTATCGG  Raphanus sativus var. oleiformis
EX746949       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTTTAATCGG  Raphanus raphanistrum subsp. maritimus
EX772641       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTTTAATCGG  Raphanus raphanistrum subsp. landra
EV569133       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTTTAATCGG  Raphanus raphanistrum subsp. landra
EV550390       --> ATGGGTAAAGGCGGTGTCGGAAAATCGTCCACTGTCAACTCTTTAATCGG  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN17106        --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ..................................................
EX751250       <-- ..................................................
FD567128       <-- ..................................................
FD581416       <-- ..................................................
FD577037       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
EY930648       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
FD563503       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
EX746949       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
EX772641       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
EV569133       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG
EV550390       --> CGAACAAGTCGTCCGTGTCAGTCCTTTCCAGGCGGAAGGTTTGAGGCCAG

               301    -    351
UN17106        --> TGATGGTTTCAAGAACAATGGGAGGGTTCACTATTAACATCATTGACACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- .........................cTTCACTATTAACATCATTGACACC  Raphanus sativus var. oleiformis
EX751250       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD567128       <-- ..................................................  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> TGATGGTTTCAAGAACAATGGGAGGCTTCACTATTAACATCATTGACACC  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> TGATGGTTTCAAGAACAATGGGAGGCTTCACTATTAACATCATTGACACC  Raphanus sativus var. oleiformis
FD563503       --> TGATGGTTTCAAGAACAATGGGAGGCTTCACTGTTAACATCATTGACACC  Raphanus sativus var. oleiformis
EX746949       --> TGATGGTTTCAAGAACAATGGGAGGGTTCACTATTAACATCATTGACACC  Raphanus raphanistrum subsp. maritimus
EX772641       --> TGATGGTTTCAAGAACAATGGGAGGGTTCACTAT................  Raphanus raphanistrum subsp. landra
EV569133       --> TGATGGTTTCAAGAACAATGGGAGGGTTCACTATTAACATCATTGACACC  Raphanus raphanistrum subsp. landra
EV550390       --> TGATGGTTTCAAGAACAATGGGAGGGTTCACTATTAACATCATTGACACC  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN17106        --> CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
EX751250       <-- ............GAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
FD567128       <-- ........................GTCAATCACCAAGCCCTCGAGTTAAT
FD581416       <-- ..................................................
FD577037       --> CCTGGCCTTGTGGAAGCTGGTTACGTCAGTCACCAAGCCCTCGAGTTAAT
EY930648       --> CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
FD563503       --> CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
EX746949       --> CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
EX772641       --> ..................................................
EV569133       --> CCTGACCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT
EV550390       --> CCTGGCCTTGTGGAAGCTGGTTACGTCAATCACCAAGCCCTCGAGTTAAT

               401    -    451
UN17106        --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTGCTGTATGTTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTGCTGTATGTTGATC  Raphanus sativus var. oleiformis
EX751250       <-- CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTCCTGTATGTTGATC  Raphanus raphanistrum subsp. maritimus
FD567128       <-- CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTGCTGTATGTTGATC  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> CAAAGGGTTTCTTGTGAACAGAACCCTAGATGTGTTGCTGTATGTTGATC  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTGCTGTATGTTGATC  Raphanus sativus var. oleiformis
FD563503       --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTGCTGTATGTTGATC  Raphanus sativus var. oleiformis
EX746949       --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTCCTGTATGTTGATC  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTCCTGTATGTTGATC  Raphanus raphanistrum subsp. landra
EV550390       --> CAAAGGGTTTCTTGTGAACAGAACCATAGATGTGTTCCTGTATGTTGATC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN17106        --> GTTTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- GTTTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus sativus var. oleiformis
EX751250       <-- GTCTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus raphanistrum subsp. maritimus
FD567128       <-- GTTTGGATGTGTATTGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> GTTTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> GTTTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus sativus var. oleiformis
FD563503       --> GTTTGGATGTGTATTGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus sativus var. oleiformis
EX746949       --> GTCTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> GTCTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus raphanistrum subsp. landra
EV550390       --> GTCTGGATGTGTATAGAGTGGATGAGCTAGATAAGCAAGTTGTTCAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17106        --> ATCACCCAAACCTTTGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ATCACCCAAACCTTTGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT  Raphanus sativus var. oleiformis
EX751250       <-- ATCACCCAAACCTTTGGCAAAGAGATATGGTGCAAAACGTTACTTGTTTT  Raphanus raphanistrum subsp. maritimus
FD567128       <-- ATCACCCAAACCCTGGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT  Raphanus sativus var. oleiformis
FD581416       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> ATCGCCCAAACCTTTGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> ATCACCCAAACCTTTGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT  Raphanus sativus var. oleiformis
FD563503       --> ATCACCCAAACCCTGGGCAAAGAGATTTGGTGCAAAACCTTGCTTGTTTT  Raphanus sativus var. oleiformis
EX746949       --> ATCACCCAAACCTTTGGCAAAGAGATATGGTGCAAAACGTTACTTGTTTT  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> ATCACCCAAACCTTTGGCAAAGAGATATGGTGCAAAACGTTACTTGTTTT  Raphanus raphanistrum subsp. landra
EV550390       --> ATCACCCAAACCTTTGGCAAAGAGATATGGTGCAAAACGTTACTTGTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN17106        --> GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCTACGAAACATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCTACGAAACATTCT  Raphanus sativus var. oleiformis
EX751250       <-- GACTCATGCTCAATTCTCCCCACCCGATGACCTTTCCTACGAAACATTCT  Raphanus raphanistrum subsp. maritimus
FD567128       <-- GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCCACGAAACATTTT  Raphanus sativus var. oleiformis
FD581416       <-- .........................................AAACATTCT  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCTACGAAACATTCT  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCTACGAAACATTCT  Raphanus sativus var. oleiformis
FD563503       --> GACTCATGCTCAGTTCTCCCCACCCGATGATCTTTCCCACGAAACATTCT  Raphanus sativus var. oleiformis
EX746949       --> GACTCATGCTCAATTCTCCCCACCCGATGACCTTTCCTACGAAACATTCT  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> GACTCATGCTCAATTCTCCCCACCCGATGACCTTTCCTATGAAACTTTTT  Raphanus raphanistrum subsp. landra
EV550390       --> GACTCATGCTCAATTCTCCCCACCCGATGACCTTTCCTACGAAACATTCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17106        --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTTTAAG
EX751250       <-- CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
FD567128       <-- CTTCCAAGAGATCAGATTCTTTCCTCAAAACTATCCGCGCTGGTTTTAAG
FD581416       <-- CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
FD577037       --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
EY930648       --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
FD563503       --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
EX746949       --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
EX772641       --> ..................................................
EV569133       --> CCTCAAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG
EV550390       --> CTTCCAAGAGATCAGATTCTCTCCTCAAAACTATCCGCGCTGGTTCTAAG

               651    -    701
UN17106        --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTATATGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTATATGCAGA  Raphanus sativus var. oleiformis
EX751250       <-- ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTTTATGCGGA  Raphanus raphanistrum subsp. maritimus
FD567128       <-- ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTATATGCAGA  Raphanus sativus var. oleiformis
FD581416       <-- ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTATATGCAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAG-TTGTATATGCAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> ATGCGTAA..........................................  Raphanus sativus var. oleiformis
FD563503       --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTATATGCAGA  Raphanus sativus var. oleiformis
EX746949       --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAG-TTGTTTATGCGGA  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTTTATGCGGA  Raphanus raphanistrum subsp. landra
EV550390       --> ATGCGTAAACAACAGTTTGAGGATTCTGCAATTGAGGTTGTTTATGCGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN17106        --> GAACAGTGGGAGATGCAGCAAGAATGACAAGGACGAAAAGGCATTACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- GAACAGTGGGAGATGCAGCAAGAATGACAAGGAAGAAAAGGCATTGCCAA  Raphanus sativus var. oleiformis
EX751250       <-- GAACAGTGGGAGATGCAGCAAGAATGACAAGGACGAAAAGGCATTACCAA  Raphanus raphanistrum subsp. maritimus
FD567128       <-- GAACAGTGGGAGATGCAGCAAGAATGACAAGGAAGAAAAGGCATTACCAA  Raphanus sativus var. oleiformis
FD581416       <-- GAACAGTGGGAGATGCAGCAAGAATGACAAGGAAGAAAAGGCATTACCAA  Raphanus sativus cv Rat-Tail Radish #3870
FD577037       --> GAACAGTGGGAGATGCAGCAgaat..........................  Raphanus sativus cv Rat-Tail Radish #3870
EY930648       --> ..................................................  Raphanus sativus var. oleiformis
FD563503       --> GAACAGTGGGAGATGCAGCAAGAATGACAAGGAAGAAAAG-CATTACCAA  Raphanus sativus var. oleiformis
EX746949       --> GAACAGTGGGAGATGCAGCAAGAATGACAAGGACGAAAAGGCATTACCAA  Raphanus raphanistrum subsp. maritimus
EX772641       --> ..................................................  Raphanus raphanistrum subsp. landra
EV569133       --> GAACAGTGGGAGATGCAGCAAGAATGACAAGGACGAAAAGGCATTACCAA  Raphanus raphanistrum subsp. landra
EV550390       --> GAACAGTGGGAGATGCAGCAAGAATGACAAGGACGAAAAGGCATTACCAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN17106        --> ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
EX751250       <-- ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
FD567128       <-- ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
FD581416       <-- ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ATGGTGAGGCGTG-ATCCCGAACTTGGTTAAG-CCATAACCGATGTTGCT
EX746949       --> ATGGTGAGGCGTGGATCCCGAACTTGGTTA-GGCCATAACCGATGTTGCT
EX772641       --> ..................................................
EV569133       --> ATGGTGAGGCGTGGATCCCGAACTTGGTTAAGGCCATAACCGATGTTGCT
EV550390       --> ATGGTGAGGCGTGGATCCCGAATTTGGTT.....................

               801    -    851
UN17106        --> ACAAATCAGAAGAAAGCGATTCATGTTGACAAGAAGATGGTAGATGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ACAAATCAGAAGAAAGCGATTCATGTTGACAAGAAGATGGTAGATGGATC
EX751250       <-- ACAAATCAGAAGAAAGCGATTCATGTTGACAAGAAGATGGTAGATGGATC
FD567128       <-- ACAAATCAGAAGAAAGCGATTCATGTTGACAAGAAGATGGTAGATGGATC
FD581416       <-- ACAAATCAGAAGAAAGCGATTCATGTTGACAAGAAGATGGTAGATGGATC
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ACAAATCAGAAGAAAGCGAT-CATGTTG......................
EX746949       --> ACAA-TCAGAAGAAA...................................
EX772641       --> ..................................................
EV569133       --> ACAATTCAGAAGAAAGCGATTCATGTg.......................
EV550390       --> ..................................................

               851    -    901
UN17106        --> TTACTCTGATGACAAAGGAAAGAAACTCATCCCTCTTATCATTGCCGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- TTACTCTGATGACAAAGGAAAGAAACTCATCCCTCTTATCATTGCCGCTC
EX751250       <-- TTACTCTGATGACAAAGGAAAGAAACTCATCCCTCTTATCATTGCTGCTC
FD567128       <-- TTACTCTGATGACAAAGGAAAGAAACTCATCCCTCTTATCATTGCCGCTC
FD581416       <-- TTACTCTGATGACAAAGGAAAGAAACTCATCCCTCTTATCATTGCCGCTC
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ..................................................
EX746949       --> ..................................................
EX772641       --> ..................................................
EV569133       --> ..................................................
EV550390       --> ..................................................

               901    -    951
UN17106        --> AGTGGTTCGTCGTTAAGATGATCCAAGGAGCCATCAGAAATGACATCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- AGTGGTTCGTCGTTAAGATGATCCAAGGAGCCATCAGAAATGACATCAAG
EX751250       <-- AGTGGTTCGTCGTTAAGATGATCCAAGGAGCCATCAGAAATGACATCAAG
FD567128       <-- AGTGGTTCGTCGTTAAGATGATCCAAGGAGCCATCAGAAATGACATCAAG
FD581416       <-- AGTGGTTCGTCGTTAAGATGATCCAAGGAGCCATCAGAAATGACATCAAG
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ..................................................
EX746949       --> ..................................................
EX772641       --> ..................................................
EV569133       --> ..................................................
EV550390       --> ..................................................

               951    -   1001
UN17106        --> ATAAGTGGTAAGCCACTCTAAGAGCTCTGAAGACATGAATAAGGTTTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- ATAAGTGGTAAGCCACTCTAAGAGCTCTGAAGACATGAATAAGGTTTTGT
EX751250       <-- ATTAGTGGTAAGCCACTCTAAGAGCTCTGAAGACATGAATGAGGTTTTGT
FD567128       <-- ATAAGTGGTAAGCCACTTTAAGAGCTTTGAAGACATGAATAAGGTTTTGT
FD581416       <-- ATAAGTGGTAAGCCACTCTAAGAGCTCTGAAGACATGAATAAGGTTTTGT
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ..................................................
EX746949       --> ..................................................
EX772641       --> ..................................................
EV569133       --> ..................................................
EV550390       --> ..................................................

               1001   -   1051
UN17106        --> TGTGATCCAACTTGAAGGAGATGAGTTTTTTCTTTTAATCGATTTTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- TGTGATCCAACTTGAAGGAGATGAGTTTTTTCTTTTAATCGATTTTAGTT
EX751250       <-- TGTGATCCAACTTCAAGGAGATGAGTTTTTTCTTTTGATCGATTTTAGTT
FD567128       <-- TGTGATCCAACTTGAAGGAGATGAGTTTTTTTTTTTAATCGATTTTAGTT
FD581416       <-- TGTGATCCAACTTGAAGGAGATGAGTTTTTTCTTTTAATCGATTTTAGTT
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ..................................................
EX746949       --> ..................................................
EX772641       --> ..................................................
EV569133       --> ..................................................
EV550390       --> ..................................................

               1051   -   1101
UN17106        --> GCAGTATTTTCATGTTTTCCTGTTTTATCTTGTCTGTAATTTTTGGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- GCAGTATTTTCATGTTTTCCTGTTTTATCTTGTCTGTAATTTTTGGATAT
EX751250       <-- GCAGCATTTTCATGTTT--TTCCTTTATCTTGTTTGTAATTTTTGGATAT
FD567128       <-- GCAGTATTTTCATGTTTTCCTGTTTTATCTTGTCTGTAATTTTTGGATAT
FD581416       <-- GCAGTATTTTCATGTTTTCCTGTTTTATCTTGTCTGTAATTTTTGGATAT
FD577037       --> ..................................................
EY930648       --> ..................................................
FD563503       --> ..................................................
EX746949       --> ..................................................
EX772641       --> ..................................................
EV569133       --> ..................................................
EV550390       --> ..................................................

               1101   -   1151
UN17106        --> TTGTTGGAATAATAAAATTGTTTTGAAA.....
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY926802       <-- TTGTTGGAATAATAAAATTGTTTcg........
EX751250       <-- TTGTTCGAAGAATAAAATTGTTTTGAAAtggcc
FD567128       <-- TTGTTGGAATAA.....................
FD581416       <-- TTGTTGGAATAA.....................
FD577037       --> .................................
EY930648       --> .................................
FD563503       --> .................................
EX746949       --> .................................
EX772641       --> .................................
EV569133       --> .................................
EV550390       --> .................................