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Alignment for radish unigene UN17108

               1      -     51
UN17108        --> AAGAAGGAAAAG-ACATTTTTGAATAATTTATTTTAATCTATGTTATTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> AAGAAGGAAAAG-ACATTTTTGAATAATTTATTTTAATCTATGTTATTAT
EV540023       --> ....ggaAAAAGAACATTTTTGAATAATTTATTT-AATCTATGTTATTAT
FD530270       --> .............ACATTTTTGAATAATTTATTT-AATCTATGTTATTAT
FD934817       --> .....................GAATAATTTATTTTAATCTATGTTATTAT
EY904310       --> ..................................................
EX906792       --> ..................................................

               51     -    101
UN17108        --> ACAAAACCAAGAAATCGAAAAACTAGAACAACCATATTA-TTTTATCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> ACAAAACCAAGAAATCGAAAAACTAGAACAACCATATTA-TTTTATCTGT
EV540023       --> ACAAAACCAAGAAATCGAAAAACTAGGACAACCATATTAATTTTATCTGT
FD530270       --> ACAAAACCAAGAAATCGAAAAACTAGAACAACCATATTA-TTTTATCTGT
FD934817       --> ACAAAACCAAGAAATCGAAAAACTAGAACAACCATATTA-TTTTATCTGT
EY904310       --> ..............................ccttattaA-TTTTATCTGT
EX906792       --> ..................................................

               101    -    151
UN17108        --> GCATTAACGGGCCGACTCCAAAGAACCTATGCTTTTGTGTGTTT-GTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> GCATTAACGGGCCGACTCCAAAGAACCTATGCTTTTGTGT-TTT-GTAAG
EV540023       --> GCATTAACGG-CTGACTCCAAAGAACCTATGCTTTTGTGT-TTT-GTAAG
FD530270       --> GCATTAACGGGCCGACTCCAGAGAACCTATGCTTCTGTAT-TTT-GTAAG
FD934817       --> GCATTAACGGGCCGACTCCAAAGAACCTATGCTTTTGTGTGTTT-GTAAG
EY904310       --> GCATTAACGGGCTGACTCCAAAGAACCTATGCTTTTGTGTGTTTTGTAAG
EX906792       --> .................CCAAAGAACCTATGCTTTTGTGTGTTT-GTAAG

               151    -    201
UN17108        --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAAACAGGAGCTTCTTT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAACCAGGAGCTTCTTT-
EV540023       --> TTAAAAAAGATAAGATTATAGTACAAAGTAATTAAACAGGAGCTTCTTT-
FD530270       --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAAACAGGAGCTTCTTT-
FD934817       --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAAACAGGAGCTTCTTT-
EY904310       --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAAACAGGAGCTTCTTT-
EX906792       --> TTAACAAAGATAAGATTATTGTACAAAGTAATTAACCAGGAGCTTCTTTT

               201    -    251
UN17108        --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- .............TTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
EV540023       --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
FD530270       --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
FD934817       --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT
EY904310       --> AATGACTATTGTTTTCCTGGTTCTGGGGTGATTGAGGCTCTATCTTTATT
EX906792       --> AATGACTATTGTTTTCTTGGTTCTGAGGTGATTGAGGCTCTATCTTTATT

               251    -    301
UN17108        --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTC
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTC
EV540023       --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGGCGGCAACGTTCAGCTC
FD530270       --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAGCGTTCAGCTC
FD934817       --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTC
EY904310       --> AACAGAGGCTCGTTCAAATCACTTGGAGTATCGGCGGTAACGTTCAGCTC
EX906792       --> AACAGAGGCTCATTCAAATCACTTGGAGTATCGTCGGTAACGTTCAGCTC

               301    -    351
UN17108        --> GGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCGTGCTCTGCTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- GGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCATGCTCTGCTAACG
EV535306       <-- ..................................................
EY908642       <-- ..................................................
EW719637       --> GGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCATGCTCTGCTAACG
EV540023       --> GGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCGTGCTCTGCTAACG
FD530270       --> GGGCGAGGCTGCAACAGCTCCGTTCATGTCACCTCCGTGCTCTGCTAATG
FD934817       --> GGGCGAGGCTGCAACAGCTCCGTTCATGTCACCTCCGTGCTCTGCTAATG
EY904310       --> GGGCGAGGCTGCAACCGCTCCGTTCATGTCTCCTCCGTGCTCTGCTAATG
EX906792       --> GGGCGAGGCTGCAACCGCTCCGTTCATGTCACCTCCGTGCTCTGCTAATG

               351    -    401
UN17108        --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
EV535306       <-- ........................................CATTAATATC
EY908642       <-- ..................................................
EW719637       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
EV540023       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
FD530270       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
FD934817       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
EY904310       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC
EX906792       --> CTTTTCTTAGAGCGTTCTGTGCTACCTTCGTTACACACACCATTAATATC

               401    -    451
UN17108        --> ACGGATATTACAAGGCTTGAAATCAAGAACGCCCATCGGCCTATAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ACGGATATCACAAGGCTTGAAATCAAGAACGCCCATCGGCCTATAGAGAA  Raphanus sativus var. oleiformis
EV535306       <-- ACGGATATTACAAGGCTCGAAATCAAGAACGCCCAGCGACCTATAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY908642       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW719637       --> ACGGATATCACAAGGCTTGAAATCAAGAACGCCCATCGGCCTATAGAGAA  Raphanus sativus var. oleiformis
EV540023       --> ACGGATATTACAAGGCTCGAAATCAAGAACGCCCAGCGACCTATAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530270       --> ACGGATATCACAAGGCTTGAGATCAAGAACGCCCATCGGCCTATAGA--A  Raphanus raphanistrum subsp. maritimus
FD934817       --> ACGGATATCACAAGGCTTGAGATCAAGAACGCCCATCGGCCTATAGAGAA  Raphanus sativus var. oleiformis
EY904310       --> ACGGATATTACGAGGCTTGAAATCAAGAACGCCCATCGGCCTATAGAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX906792       --> ACGGATATTACAAGGCTTGAGATCAAGAACGCCCATCGGCCTATAGAGAA  Raphanus sativus cv Rat-Tail Radish #3870

               451    -    501
UN17108        --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- TTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
EV535306       <-- CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
EY908642       <-- ..................................................
EW719637       --> TTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
EV540023       --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
FD530270       --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
FD934817       --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
EY904310       --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG
EX906792       --> CTCGCTCCACTTGTGAGTCACATCAGAAAGGTCTTTTAGTGTTGTTCCAG

               501    -    551
UN17108        --> CATACACTAACGCAAGTGTTATTGGCATCATCCCTAGCCAAGAAGAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- CATACACTAACGCAAGCGTTATTGGCATCATTCCTAGCCAAGAAGAAAGC
EV535306       <-- CATACACTAACGCAAGCGTTATTGGCATCATCCCTAACCATGAAGAAAGC
EY908642       <-- ..................................................
EW719637       --> CATACACTAACGCAAGCGTTATTGGCATCATTCCTAGCCAAGAAGAAAGC
EV540023       --> CATACACTAACGCAAGCGTTATTGGCATCATCCCTAACCATGAAGAAAGC
FD530270       --> CATACACTAACGCAAGTGTTATTGGCATCATCCCTAGCCAAGAAGAAAGC
FD934817       --> CATACACTAACGCAAGTGTTATTGGCATCATCCCTAGCCAAGAAGAAAGC
EY904310       --> CATACACTAACGCAAGTGTTATTGGCATCATCCCTAGCCAAGATGAAAGC
EX906792       --> CATACACTAACGCAAGTGTTATTGGCATCATCCCTAACCAAGAAGAAAGC

               551    -    601
UN17108        --> AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- AAGTATGGGCCCAGAGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
EV535306       <-- AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
EY908642       <-- ................................TAAGAGGTAGTTCAACAT
EW719637       --> AAGTATGGGCCCAGAGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
EV540023       --> AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
FD530270       --> AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
FD934817       --> AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
EY904310       --> AAGTATGGGCCCAGCGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT
EX906792       --> AAGTATGGGCCCAGAGTTATCGGCGTTACAGATAAGAGGTAGTTCAACAT

               601    -    651
UN17108        --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EV535306       <-- GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EY908642       <-- GCTGAAGGGGAGAAGAGGGGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EW719637       --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EV540023       --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
FD530270       --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
FD934817       --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EY904310       --> GCTGAAGGGGAGAAGAGGGGCAAGCCGGAGCAACAAGCATATCTTGAAAC
EX906792       --> GCTGAAGGGGAGAAGAGGAGCAAGCCGGAGCAACAAGCATATCTTGAAAC

               651    -    701
UN17108        --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EV535306       <-- CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EY908642       <-- CTGATTTCTCAATAGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EW719637       --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EV540023       --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
FD530270       --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
FD934817       --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EY904310       --> CTGATTTCTCAATAGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC
EX906792       --> CTGATTTCTCAATCGCGAGTGCCACTGACTGAAACTGAGGATAGTCCTTC

               701    -    751
UN17108        --> AGTTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- AATTTTGCTACTACGAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EV535306       <-- AGTTTTGCTACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EY908642       <-- AGTTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EW719637       --> AATTTTGCTACTACGAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EV540023       --> AGTTTTGCTACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
FD530270       --> AGTTTTGCAACTACAAAAGGCTT...........................
FD934817       --> AATTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EY904310       --> AGTTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC
EX906792       --> AGTTTTGCAACTACAAAAGGCTTTCCAATGGTACGGCCTAGAAGAAACGC

               751    -    801
UN17108        --> TGCGCCTGAGCCAAGCGTAGCACCGACCGAGTCCGCCACAAAACCAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- TGCACCTGAGCCAAGCGTAGCACCGACCGAGTCCGCCACAAAACCAATTG
EV535306       <-- TGCGCCTGAGCCAAGCGTAGCACCGACCGAGTCCGCCACAAAACCAATTG
EY908642       <-- TGCGCCTGAGCCAAGCGTAGCACCTACCGAGTCCGCCACAAAACCAATTG
EW719637       --> TGCACCTGAGCCAAGCGTAGCACCGACCGAGTCCGCCACAAAACCAATTG
EV540023       --> TGCGCC............................................
FD530270       --> ..................................................
FD934817       --> TGCGCCTGAGCCAAGCGTAGCACCGACCGAGTCCGCCACAAAACCAATTG
EY904310       --> TGCGCCTGAGCCAAGCGTAGCACCTACCGAGTCCGCCACAAAACCAATTG
EX906792       --> TGCACCTGAGCCAAGCGTAGCACCGACCG.....................

               801    -    851
UN17108        --> GCAGTCCAAAAAGATAGCCACCACCGATCGTTAGAACAGAGGCAGGAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- GCAGTCCAAAAAGATAGCCACCACCGATCGTTAGAACAGAGGCAGGAACA
EV535306       <-- GCAGTCCAAAAAGATAGCTACCACCGATCGTTAGAACAGAGGCAGGAACA
EY908642       <-- GCAGTCCAAAAAGATAGCCACCACCGATCGTTAGAACAGAGGCGGGAACA
EW719637       --> GCAGTCC...........................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> GCAGTCCAAAAA......................................
EY904310       --> GCAGTCCAAAAA......................................
EX906792       --> ..................................................

               851    -    901
UN17108        --> GCCAAAACTGTTAGAGGAATGTACGCAACAGCTAGGGCAAGAGGTCCCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- GCCAAAACTGTTAGAGGAATGTACGCAACAGCTAGGGCAAGAGGTCCCCA
EV535306       <-- GCCAAAACTGTTAGAGGAACGTACGCAACAGCTAGGGCAAGAGGTCCCCA
EY908642       <-- GCCAAAACTGTTAGAGGAATGTACGCAACAGCTAGGGCAAGAGGTCCCCA
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               901    -    951
UN17108        --> AGGCCCTAGATCTTGTTCAACCCATAACAAAAAATCCTTCAACAGCTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- AGGCCCTAGATCTTGTTCAACCCATAACAAAAAATCCTTCAACAGCTGCT
EV535306       <-- AGGCCCTGGATCTTGTTCAACCCATAACAAAAAATCCTTCAACAGCTGCT
EY908642       <-- AGGCCCTAGATCTTGTTCAACCCATAACAAAAAGTCCTTCAACAGCTGCT
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               951    -   1001
UN17108        --> CAACGGGGAGAAAATAGCAAGCTAAGACAATTGCAGCTACAAGGATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- CAACGGGGAGAAAATAGCAAGCTAAGACAATTGCAGCTAC..........
EV535306       <-- CAACGGGGAGAAAATAGCAAGCTAAGACAATTGCAGCTACAAGGATCAAA
EY908642       <-- CAACGGGGAGAAAATAGCAAGCTAAGACAATTGCAGCTACAAGGATCAAA
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               1001   -   1051
UN17108        --> AGAACTGAAATCCTGAGAGCAGATCCCCACGTTAACGCCATCGACTAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- AGAACTGAAATCCTGAGAGCAGATCCCCACGTTAACGCCATCGACTAGGC
EY908642       <-- AGAACTGAAATCCTCAGAGCAGATCCCCACGTTAACGCCATCGACGAGGC
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               1051   -   1101
UN17108        --> GACCGTTATTACGACGGGTATATCGCCTCCCTTAACTTCTTACACAGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- GACCGTTATTACGACGGGTATATCGCCTCCCTTAACTTCTTACACAGGTC
EY908642       <-- GACCGTTATTACGACGCGTATATCGCCTCCCTTAACTTCTTACACAGGTC
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               1101   -   1151
UN17108        --> TTGCTTGGATCTATGGATTGTTCTCTCAGCCAAGCAAACAAAAAAAAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- TTGCTTGGATCTATAGATTGTTCTCTCAGCCAAGC...............
EY908642       <-- TTGCTTGGATCTATGGATTGTTCTCTCACCCAAGCAAACAAAAAAAAACA
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               1151   -   1201
UN17108        --> GAAAAGCCGAATTCTCCGACAAAAAGGGAACACAGCAAAACGTAACCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW714518       <-- ..................................................
EV535306       <-- ..................................................
EY908642       <-- GAAAAGCCGAATTCTCCGACAAAAAGGGAACACAGCAAAACGTAACCCTT
EW719637       --> ..................................................
EV540023       --> ..................................................
FD530270       --> ..................................................
FD934817       --> ..................................................
EY904310       --> ..................................................
EX906792       --> ..................................................

               1201   -   1251
UN17108        --> AAGGGTCC
                   ~~~~~~~~
EW714518       <-- ........
EV535306       <-- ........
EY908642       <-- AAGGGTCC
EW719637       --> ........
EV540023       --> ........
FD530270       --> ........
FD934817       --> ........
EY904310       --> ........
EX906792       --> ........