1      -     51
UN17118        --> GGAAAAACCCTAGTCTAACAAAAAGCTGTCGTCACACATTTGCCGGAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- ......ggCCTAGTCTAACAAAAAGCTGTCGTCACGCATTTGCCGGAGGT
EV542446       <-- ..............ggAACAAAAAGCTGTCGTCACACATTTGCCGGAGGT
FD960986       <-- ..................................................
FD961710       <-- ..................................................
FD560747       --> GGAAAAACCCTAGTCTAACAAAAAGCTGTCGTCACACATTTGCCGGAGGT
FD962434       --> ......ggCCTAGTCTAACAAAAAGCTGTCGTCACGCATTTGCCGGAGGT
EV536026       --> ...............gAACAAAAAGCTGTCGTCACACATTTGCCGGAGGT
EV538438       --> ..............ggAACAAAAAGCTGTCGTCACACATTTGCCGGAGGT
FD965168       --> ..................................................
FD966172       --> ..................................................

               51     -    101
UN17118        --> AGCGCCGATTCAGTCGTCAGAACTACTATGGGTAAGGTTCACGGTTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- AGCGCCGATTCAGTCGTCAGAACTACTATGGGTAAGGTTCACGGTTCATT  Raphanus raphanistrum subsp. maritimus
EV542446       <-- AGCGCCGATTCAGTCGTCAGAACAACTATGGGTAAGGTTCACGGTTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960986       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD961710       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD560747       --> AGCGCCGATTCAGTCGTCAGAACTACTATGGGTAAGGTTCACGGTTCATT  Raphanus sativus var. oleiformis
FD962434       --> AGCGCCGATTCAGTCGTCAGAACTACTATGGGTAAGGTTCACGGTTCATT  Raphanus raphanistrum subsp. maritimus
EV536026       --> AGCGCCGATTCAGTCGTCAGAACAACTATGGGTAAGGTTCACGGTTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538438       --> AGCGCCGATTCAGTCGTCAGAACAACTATGGGTAAGGTTCACGGTTCATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965168       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD966172       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN17118        --> GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
EV542446       <-- GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
FD960986       <-- ..................................................
FD961710       <-- ..................................................
FD560747       --> GGCTCGTGCCGGTAAGGTGAGAGGACAGACTCCCAAAGTGGCTAAGCAGG
FD962434       --> GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
EV536026       --> GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
EV538438       --> GGCTCGTGCCGGTAAGGTGAGAGGACAGACGCCTAAAGTGGCTAAGCAGG
FD965168       --> ..................................................
FD966172       --> ..................................................

               151    -    201
UN17118        --> ACAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAACGTCTTCAACATAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- ACAAGAAGAAGAAGCCACGTGGTCGTGCCCACAAACGTCTTCAACATAAC  Raphanus raphanistrum subsp. maritimus
EV542446       <-- ACAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAACGTTTTCAACACAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960986       <-- ....................................ggCTTCAACATAAC  Raphanus raphanistrum subsp. maritimus
FD961710       <-- ....................................ggCTTCAACATAAC  Raphanus raphanistrum subsp. maritimus
FD560747       --> ACAAGAAGAAGAAGCCACGTGGTCGTGCCCACAAACGTCTTCAACACAAC  Raphanus sativus var. oleiformis
FD962434       --> ACAAGAAGAAGAAGCCACGTGGC-GTGCCCACAA-CGTCTTCA-CATAAC  Raphanus raphanistrum subsp. maritimus
EV536026       --> ACAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAACGTCTTCAACACAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV538438       --> ACAAGAAGAAGAAGCCACGTGGCCGTGCCCACAAACGTCTTCAACACAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD965168       --> ....................................ggCTTCAACATAAC  Raphanus raphanistrum subsp. maritimus
FD966172       --> ....................................ggCTTCAACATAAC  Raphanus raphanistrum subsp. maritimus

               201    -    251
UN17118        --> CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
EV542446       <-- CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD960986       <-- TGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD961710       <-- TGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD560747       --> CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD962434       --> CGCCGT............................................
EV536026       --> CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
EV538438       --> CGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD965168       --> TGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA
FD966172       --> TGCCGTTTCGTCACCGCCGTTGTTGGATTTGGCAAGAAGAGAGGACCCAA

               251    -    301
UN17118        --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
EV542446       <-- CTCATTTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD960986       <-- CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD961710       <-- CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD560747       --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD962434       --> ..................................................
EV536026       --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
EV538438       --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD965168       --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT
FD966172       --> CTCATCTGAGAAATAGATGATGAACGCTTTGGATTTGAAGTTTTGCGGAT

               301    -    351
UN17118        --> TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCA
EV542446       <-- TTTGTTTT-AATATCTTTCTTGTTTAATGTGTAA--GGCTGCTATTTTTT
FD960986       <-- TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT
FD961710       <-- TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT
FD560747       --> TTTTTTTTTAACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT
FD962434       --> ..................................................
EV536026       --> TTTGTTTT-AATATCTTTCTTGTTTAATGTGTAAGACT--GCTATTTTCT
EV538438       --> TTTGTTTT-AATATCTTTCTTGTTTAATGTGTAAG--GCTGCTATTTTCT
FD965168       --> TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT
FD966172       --> TTTGTTTT-AACATCTTTCTTGTTTAATGTGTAAGACTCTGCTATTTTCT

               351    -    401
UN17118        --> CAATAAAATTGACTTTTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~
FD958994       <-- CAATAAAATTGACTTTTTGAT
EV542446       <-- CAATAAAATTGACTTTTTG..
FD960986       <-- CAATAAAATTGACTTTTTGAc
FD961710       <-- CAATAAAATTGACTTTTTGAc
FD560747       --> CAATAAAATTGACTTTTTGAT
FD962434       --> .....................
EV536026       --> CAATAAAATTGACTTTTTGAT
EV538438       --> CAATAAAATTGACTTTTTG..
FD965168       --> CAATAAAATTGACTTTTTGAc
FD966172       --> CAATAAAATTGACTTTTTGAc