RadishBase

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Alignment for radish unigene UN17161

               1      -     51
UN17161        --> GGATTATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> GGATTATTCACAGAGCTTAACAAAAAAAAAACGTCTCATCTAAAATCAAA
EX889067       --> ...ggATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
EX890237       --> ...ggATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
EY933535       --> ....gATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
FD543878       --> ...ggATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
FD556809       --> ...ggATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
FD558250       --> .ggagATTCACAGAGCTTAACAAAAAAA---CGTCTCATCTAAAATCAAA
FD580627       --> ...ggATTCACAGAGCTTAACAAAAAAA--ACGTCTCATCTAAAATCAAA
FD956691       --> ...ggATTCACAGAGCTTAACAAAAAAA-AACGTCTCATCTAAAATCAAA
FD564057       --> ........gACAGAGCTTAACAAAAAAA-AACGTCTCATCTAAAATCAAA
FD940264       --> .......ggACAGAGCTTAACAAAAAAA-AACGTCTCATCTAAAATCAAA
EX754775       --> ..................................................

               51     -    101
UN17161        --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> CCCAGAAGAAAGTCAAAAGACG----------AGTGAAGAAAGATGGGGA
EX889067       --> CCCAGAAGAAA-TCAAAAGACG----------AGTGAAGAAAGATGGGGA
EX890237       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
EY933535       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD543878       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD556809       --> CCCAGAAGAGAATCAAAAGACGGTAACTTTCGAGTGAAGAAAGATGGGGA
FD558250       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD580627       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD956691       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD564057       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
FD940264       --> CCCAGAAGAAAATCAAAAGACG----------AGTGAAGAAAGATGGGGA
EX754775       --> ..................................................

               101    -    151
UN17161        --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAAAGAA
EX889067       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAAAGAA
EX890237       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAATGAA
EY933535       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAAAGAA
FD543878       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCGACGGTGGCGATCAAAGAA
FD556809       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAAGGAA
FD558250       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATAAAGGAA
FD580627       --> ATTTATTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAA
FD956691       --> ATTTATTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAA
FD564057       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAA
FD940264       --> ACTTGTTGTGCTGTGTACAAGTGGACCAGTCAACGGTGGCGATCAAAGAA
EX754775       --> ..................................................

               151    -    201
UN17161        --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCTTGGTTGCCATTTTCTCC
EX889067       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
EX890237       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
EY933535       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD543878       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD556809       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCCCC
FD558250       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD580627       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD956691       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD564057       --> ACGTTTGGGAA-GTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
FD940264       --> ACGTTTGGGAAAGTTCGAAGATGTTCTAGAGCCTGGTTGCCATTTTCTCC
EX754775       --> ..................................................

               201    -    251
UN17161        --> CATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> CATGGTGTCTTGGTCAGCAAGTCGCTGGTTACCTCTCTCTCTCAGGCTTC
EX889067       --> CATGGTGTCTTGGTCAGCAAGTCGCTGGTTACCTCTCTCTC--AGGCTTC
EX890237       --> CATGGTGTCTTGGTCAGCAAGTCGCTGGTTACCTCTCTCTC--AGGCTTC
EY933535       --> CATGGTGTCTTGGTCAGCAAGTCGCTGGTTACCTCTCTCTC--AGGCTTC
FD543878       --> CATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD556809       --> CATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD558250       --> CATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD580627       --> CATGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD956691       --> CATGGTGTCTTGGTCGGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD564057       --> CTTGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCTCTC--AGGCTTC
FD940264       --> CTTGGTGTCTTGGTCAGCAAGTTGCTGGTTACCTCTCCCTC--AGGCTTC
EX754775       --> ..................................................

               251    -    301
UN17161        --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACTAAGGACAATGTGTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759028       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555457       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX777452       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD538109       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938207       --> AGCGGTTGGATGTTCGCTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus sativus cv Early Scarlet Globe
EX889067       --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACCAAGGACAATGTGTTTGTT  Raphanus sativus var. oleiformis
EX890237       --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACCAAGGACAATGTGTTTGTT  Raphanus sativus var. oleiformis
EY933535       --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACCAAGGACAATGTGTTTGTT  Raphanus sativus var. oleiformis
FD543878       --> AGCAGTTGGATGTTCGTTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556809       --> AGCAGTTGGATGTTCGTTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus raphanistrum subsp. landra
FD558250       --> AGCAGTTGGATGTTCGTTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus raphanistrum subsp. landra
FD580627       --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus sativus cv Rat-Tail Radish #3870
FD956691       --> AGCAGTTGGATGTTCGCTGCGAGACTAAGACTAAGGACAATGTGTTTGTT  Raphanus sativus cv Rat-Tail Radish #3870
FD564057       --> AGCAGTTGGATGTTCGTTGCGAGACTAAGACCAAGGACAATGTGTTTGTT  Raphanus sativus var. oleiformis
FD940264       --> AGCAGTTGGATGTTCGTTGCGAGACTAAGACCAAGGACAATGTGTTTGTT  Raphanus sativus var. oleiformis
EX754775       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN17161        --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- .................................GCTAACAATGCCAATGA
EX759028       <-- ..................................................
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
EX889067       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
EX890237       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
EY933535       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD543878       --> AACGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAACAATGCCAATGA
FD556809       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD558250       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD580627       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD956691       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD564057       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
FD940264       --> AATGTTGTTGCATCGATTCAGTACCGTGCCTTGGCTAATAATGCCAATGA
EX754775       --> ..................................................

               351    -    401
UN17161        --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- TGCTTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
EX759028       <-- ..............gTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- ..................................................
EX900821       <-- ..................................................
EY938207       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
EX889067       --> TGCCTTCTACAAACTCAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
EX890237       --> TGCCTTCTACAAACTCAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
EY933535       --> TGCCTTCTACAAACTCAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD543878       --> TGCTTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD556809       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD558250       --> TGCCTTCTACAAGCTTAGTAAC--TAGGAGCCAGATCCAAGCTTACGTCT
FD580627       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD956691       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD564057       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
FD940264       --> TGCCTTCTACAAGCTTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT
EX754775       --> ..............gTAGTAACACTAGGAGCCAGATCCAAGCTTACGTCT

               401    -    451
UN17161        --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759028       <-- TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555457       <-- ......................CCCCAAGCTGATTCTTGATGATGTCTTT  Raphanus raphanistrum subsp. landra
EX777452       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD538109       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900821       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY938207       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTTGATTATGTCTTT  Raphanus sativus cv Early Scarlet Globe
EX889067       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus sativus var. oleiformis
EX890237       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus sativus var. oleiformis
EY933535       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus sativus var. oleiformis
FD543878       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556809       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTTGATGATGTCTTT  Raphanus raphanistrum subsp. landra
FD558250       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTTGATGATGTCTTT  Raphanus raphanistrum subsp. landra
FD580627       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGTTGATTCTGGATGATGTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD956691       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTTGATGATGTCTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD564057       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus sativus var. oleiformis
FD940264       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTT-  Raphanus sativus var. oleiformis
EX754775       --> TTGATGTTATCAGAGCAAGTGTCCCCAAGCTGATTCTGGATGATGTCTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN17161        --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX759028       <-- GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD555457       <-- GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX777452       <-- ..GCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD538109       <-- .....GAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX900821       <-- .................................GAGGAGCTCGAGAAGGC
EY938207       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX889067       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX890237       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EY933535       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD543878       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD556809       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD558250       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD580627       --> GAGCAGAAGAATGAAATTGCCAAAGCCGTTGAAGAGGAGCTCGAGAAGGC
FD956691       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD564057       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
FD940264       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC
EX754775       --> GAGCAGAAGAATGAAATTGCCAAAGCTGTTGAAGAGGAGCTCGAGAAGGC

               501    -    551
UN17161        --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EX759028       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD555457       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EX777452       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD538109       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EX900821       <-- AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EY938207       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EX889067       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EX890237       --> AACGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
EY933535       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD543878       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD556809       --> GATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD558250       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD580627       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD956691       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG
FD564057       --> AATGTCTGCTTACGGTTTTGAGATCGTCCAAACTCTCATCGTTGACATCG
FD940264       --> AATGTCTGCTTACGGTTTTGAGATCGTCCAAACTCTCATCGTTGACATCG
EX754775       --> AATGTCTGCTTACGGTTTTGAGATTGTCCAAACTCTCATCGTTGACATCG

               551    -    601
UN17161        --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EX759028       <-- AGCCTGACGAACATGTTAAACGAGCCATGAACGAAATCAACGCTGCTGCA
FD555457       <-- AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EX777452       <-- AGCCTGACGAACATGTCAAATGAGCCATGAACGAAATCAACGCTGCTGCA
FD538109       <-- AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EX900821       <-- AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EY938207       --> AGCCTGACGAACATGTCAAACGATCCATGAACGAAATCAACGCTGCTGCA
EX889067       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EX890237       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
EY933535       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
FD543878       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
FD556809       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
FD558250       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTG..
FD580627       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTG..
FD956691       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCA
FD564057       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCG
FD940264       --> AGCCTGACGAACATGTCAAACGAGCCATGAACGAAATCAACGCTGCTGCG
EX754775       --> AGCCTGACGAACATGTTAAACGAGCCATGAACGAAATCAACGCTGCTGCA

               601    -    651
UN17161        --> AGGATGAGGTTGGCTGCGAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759028       <-- AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555457       <-- AGGATGAGGTTGGCTGCGAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. landra
EX777452       <-- AGGATGAGGTTGGCTGCGAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. landra
FD538109       <-- AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900821       <-- AGGATGAGGTTGGCTGCGAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus sativus cv Early Scarlet Globe
EY938207       --> AGGATGAGGTTGGCTGCGAACGAAAAGGCAGTGGCTGAGAAAATCCTCCA  Raphanus sativus cv Early Scarlet Globe
EX889067       --> AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus sativus var. oleiformis
EX890237       --> AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus sativus var. oleiformis
EY933535       --> AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAG-CTGAG...........  Raphanus sativus var. oleiformis
FD543878       --> AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556809       --> AGGATGAGGTTGGCTGCGAACGAA..........................  Raphanus raphanistrum subsp. landra
FD558250       --> ..................................................  Raphanus raphanistrum subsp. landra
FD580627       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD956691       --> AGGATGAGGTTGGCTGCGAACGAA..........................  Raphanus sativus cv Rat-Tail Radish #3870
FD564057       --> AGGATGAGGTTGGCTGCGAACAAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus sativus var. oleiformis
FD940264       --> AGGATGAGGTTGGCTGCGAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus sativus var. oleiformis
EX754775       --> AGGATGAGGTTGGCTGCAAACGAAAAGGCAGAGGCTGAGAAAATCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN17161        --> GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759028       <-- GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555457       <-- GATCAATCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTCTCTGGTCTAG  Raphanus raphanistrum subsp. landra
EX777452       <-- GATCAATCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTTTGGTTTAG  Raphanus raphanistrum subsp. landra
FD538109       <-- GATCAAGCGAGCTGAAGGCGAAGCCGAGGCCAAGTACCTGTCTGGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900821       <-- GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTAG  Raphanus sativus cv Early Scarlet Globe
EY938207       --> GATCAAGCGAGCTGAAG-TGAAGC..........................  Raphanus sativus cv Early Scarlet Globe
EX889067       --> GATCAAGCGAGCTGAAG-TGAAGCCGAG-CCAAGTACCTGTCTGGTCT-A  Raphanus sativus var. oleiformis
EX890237       --> GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTAG  Raphanus sativus var. oleiformis
EY933535       --> ..................................................  Raphanus sativus var. oleiformis
FD543878       --> GATCAAGCGAGCTGAAG-TGAAGCCGAG-CCAAGTACCTGTCTGGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556809       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558250       --> ..................................................  Raphanus raphanistrum subsp. landra
FD580627       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD956691       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD564057       --> GATCAAGCGAGCTGAAG-TGAAGC..........................  Raphanus sativus var. oleiformis
FD940264       --> GATCAAGCGAGCTGAAAGTGAAGCCGAG-CCAAGTACCTctcccgtct..  Raphanus sativus var. oleiformis
EX754775       --> GATCAAGCGAGCTGAAGGTGAAGCCGAGGCCAAGTACCTGTCTGGTCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN17161        --> GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
EX759028       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCTACGGGCTACGCGACAGCGTC
FD555457       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
EX777452       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
FD538109       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
EX900821       <-- GTATCGCCCGTCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGCGTC
EY938207       --> ..................................................
EX889067       --> GTATCGCCCG-CAGAGca................................
EX890237       --> GTATCGCCCGCCAGAGGCAAGCCATTGTCGACGGGCTACGCGACAGTGTC
EY933535       --> ..................................................
FD543878       --> GTATCGCCCGTCAGAG..................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> GTATCGCCCGTCAGAGGCAAGCCATTGTCTACGGGCTACGCGACAGCGTC

               751    -    801
UN17161        --> CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
EX759028       <-- CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
FD555457       <-- CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
EX777452       <-- CTTGGTTTTTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
FD538109       <-- CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA
EX900821       <-- CTTGGTTTCTCTGTGAATGTTCCCGGGACTACTGCTAAAGATGTGATGGA
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGA....
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> CTTGGTTTCTCTGTGAATGTTCCCGGGACAACTGCTAAAGATGTGATGGA

               801    -    851
UN17161        --> CATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- CATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759028       <-- CATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD555457       <-- CATGGTGCTCGTTACGCAGTACTTCGACACGATGAAGGAGATTGGTGCCA  Raphanus raphanistrum subsp. landra
EX777452       <-- CATGGTGCTCGTTACGCAGTACTTTGACACGATGAAGGAGATTGGTGCCA  Raphanus raphanistrum subsp. landra
FD538109       <-- CATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900821       <-- CATGGTGCTCGTTACGCAGTACTTTGACACGATGAAGGAGATTGGTGCCA  Raphanus sativus cv Early Scarlet Globe
EY938207       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX889067       --> ..................................................  Raphanus sativus var. oleiformis
EX890237       --> ..................................................  Raphanus sativus var. oleiformis
EY933535       --> ..................................................  Raphanus sativus var. oleiformis
FD543878       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556809       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558250       --> ..................................................  Raphanus raphanistrum subsp. landra
FD580627       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD956691       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD564057       --> ..................................................  Raphanus sativus var. oleiformis
FD940264       --> ..................................................  Raphanus sativus var. oleiformis
EX754775       --> CATGGTGCTTGTTACGCAGTACTTCGACACGATGAAGGAGATTGGCGCCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               851    -    901
UN17161        --> GTTCCAAATCCTCTGCTGTCTTCATTCCCCATGGACCAGGAGCTGTACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GTTCCAAATCCTCTGCTGTCTTCATTCCCCATGGACCAGGAGCTGTACGC
EX759028       <-- GTTCCAAATCCTCTGCTGTCTTCATTCCCCATGGACCAGGAGCTGTACGC
FD555457       <-- GTTCCAAATCCTCTGCTGTCTTCATTCCCCACGAGCCAGTAGCTGTTCGC
EX777452       <-- GTTCCAAATCCTTTGC..................................
FD538109       <-- GTTCCAAATCCCCTGCTGTCTTCATTCCCCATGGACCAGGAGCTGTACGC
EX900821       <-- GTTCCAAATCCTCTGCTGTCTTCATTCCACACGGACCAGGAGCTGTTCGC
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> GTTCCAAATCCTCTGCTGTCTTCATTCCCCATGGACCAGGAGCTGTACGC

               901    -    951
UN17161        --> GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA
EX759028       <-- GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA
FD555457       <-- GATGTGGCTACTCAGATCAGAGATGGTCTCCTTCAAGGCTCCTTTGCAGA
EX777452       <-- ..................................................
FD538109       <-- GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA
EX900821       <-- GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> GATGTGGCTACTCAGATCAGAGATGGGCTCCTTCAAGGCTCCTTTGCAGA

               951    -   1001
UN17161        --> CCAGTCCTGAAATATAGATAATGGACTGATATCATTATATGTTCTCTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- CCAGTCCTGAAATATAGATAATGGACTGATATCATTATATGTTCTCTACT
EX759028       <-- CCAGTCCTGAAATATAGATAATGGACTGATATCATTATATGTTCTC--TT
FD555457       <-- CCAGTCCTGAAATATAGATAATGGACTGA--TCATTATATGTTCTCTACT
EX777452       <-- ..................................................
FD538109       <-- CCAGTCCTGAAATATGGATAATGAACTGATATCATTATATGTTCTCTACT
EX900821       <-- CCAGTCCTGAAATATAGATAATGGACTGA--TCATTATATGTTCTCTACT
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> CCAGTCCTGAAATATAGATAATGGACTGATATCATTATATGTTCTCT--T

               1001   -   1051
UN17161        --> AAGCTTGCTGTGTGTTAAGA-CTTATGATCTC--GTGTTGAGAAACTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- AAGCTTGCTGTGTGTTAAGA-CTTATGATCTC--GTGTTGAGAAACTCTC
EX759028       <-- AAGCTTGCTGTGTGTTAAGA-CTTATGATCTC--GTGTTGAGAAACTCTC
FD555457       <-- AAGCTTGCTGTGTGTTAAGATCCTATGATCTCTTGTGTTGAGAAACTCTC
EX777452       <-- ..................................................
FD538109       <-- AAGCTTGCTGTGTGTTAAGA-CTTATGATCTC--GTGTTGAGAAACTCTC
EX900821       <-- AAGCTTGCTGTGTGTTAAGATCCTATGATCTCTTGTGTTGAGAAACTCTC
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> AAGCTTGCTGTGTGTTAAGA-CTTATGATCTC--GTGTTGAGAAACTCTC

               1051   -   1101
UN17161        --> ATGCTTTAGGTTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ATGCTTTAGGTTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGT
EX759028       <-- ATGCTTTAGGTTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGT
FD555457       <-- ATGCTTTAGGTTTCTATATTTTTC..........................
EX777452       <-- ..................................................
FD538109       <-- ATGCTTTAGGTTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGT
EX900821       <-- ATGCTTTAGGTTTCTATATTTTTCGTTATTATATTTCACGTATTTGGAGT
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> ATGCTTTAG-TTTCTATATTTTTCGTTATTGTATTCCACGTATTTGGAGT

               1101   -   1151
UN17161        --> GTGCAACCAAAAAATCGTAATTAATCAAATAATGTATATGTTGATCATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- GTGCAACCAAAAAATCGTAATTAATCAAATAATGTATATGTTGAgc....
EX759028       <-- GTGCAACCAAAAAATCGTAATTAATCAAATAATGTAT.............
FD555457       <-- ..................................................
EX777452       <-- ..................................................
FD538109       <-- GTGCAACCAAAAAATCGTAATTAATCAAATAATGTATATGTTGATCATGT
EX900821       <-- GTACAACCAAAAA-TCGTAATTAATCAAATAATcatcatgttgacc....
EY938207       --> ..................................................
EX889067       --> ..................................................
EX890237       --> ..................................................
EY933535       --> ..................................................
FD543878       --> ..................................................
FD556809       --> ..................................................
FD558250       --> ..................................................
FD580627       --> ..................................................
FD956691       --> ..................................................
FD564057       --> ..................................................
FD940264       --> ..................................................
EX754775       --> GTGCA-CCAAAAA.....................................

               1151   -   1201
UN17161        --> TCAAATTTGCGAACACTCGTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~
EV540327       <-- ........................
EX759028       <-- ........................
FD555457       <-- ........................
EX777452       <-- ........................
FD538109       <-- TCAAATTTGCGAACACTCGTGACT
EX900821       <-- ........................
EY938207       --> ........................
EX889067       --> ........................
EX890237       --> ........................
EY933535       --> ........................
FD543878       --> ........................
FD556809       --> ........................
FD558250       --> ........................
FD580627       --> ........................
FD956691       --> ........................
FD564057       --> ........................
FD940264       --> ........................
EX754775       --> ........................