Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17183

               1      -     51
UN17183        --> AATCAAGTAGAACTTTTAATTTCTGAAATCAAAATGTCTTAATAAATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> AATCAAGTAGAACTTTTAATTTCTGAAATCAAAATGTCTTAATAAATAAA
EX899601       --> ...CAAGTAGAACTTTTAATTTCTGAAATAAAAATGTCTTAATAAATAAA
EY903600       --> ......................gTGAAATCAAAATGTCTAAATAAATTAA
FY452511       --> ..................................................
EX908206       --> ..................................................

               51     -    101
UN17183        --> AATTACAGAGTAGAGAAAATAAA-ATATGATATATATATAGAAGCTTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> AATTACAGAGTAGAGAAAATAAA-ATAT----TATATATAGAAGCTTACA
EX899601       --> AATTACAGAGTAGAGAAAATAAA-ATAT----TATATATAGAAGCTTACA
EY903600       --> AATTACAGAGTAGAGAAAATAAA-ATATTATATATATATAGAAGCTTACA
FY452511       --> .....CAGAGTAGAGAAAATAAACATATGATATATATATAGAAGCTTACA
EX908206       --> ..............ggAAATAAACATATGATATATATATAGAAGCTTACA

               101    -    151
UN17183        --> GAAATTAAACCCTACAAGACCTTTTTCTTTACATTAAAAAA-GGTTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ........................TTCTTTACATTAAAAAA-GGTTTCCA
EV565402       <-- ........................TTCTTTACATTAAAAAA-GGTTTCCA
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> GAAATAAAACCCTACAAGACCTTTTTCTTTACATTAAAAAAAGGTTTCCA
EX899601       --> GAAATAAAACCCTACAAGACCTTTTTCTTTACATTAAAAAAAGGTTTCCA
EY903600       --> GAAATTAAACCCTACAAGACCTTTTTCTTTACATTAAAAA--GGTTTCCA
FY452511       --> GAAATTAAACCCTACAAGACCTTTTTCTTTACATTAAAAAA-GGTTTCCA
EX908206       --> GAAATTAAACCCTACAAGACCTTTTTCTTTACATTAAAAAA-GGTTTCCA

               151    -    201
UN17183        --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
EV565402       <-- AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
EX899601       --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
EY903600       --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
FY452511       --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA
EX908206       --> AGAATCATGAATTTCAATAAAGAAAAAGACTTTCCGAAACTTATACCTCA

               201    -    251
UN17183        --> AACAAACTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- AACAAACTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
EV565402       <-- AACAAACTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> AACAAACTCAAGCACTTGAACCGGTCATGTCAACATATTACTTCCGGCAG
EX899601       --> AACAAACTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
EY903600       --> AACAA-CTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
FY452511       --> AACAA-TTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG
EX908206       --> AACAA-TTCAAGCACTTGAACCGGTCATGTCAACATACTACTTCCGGCAG

               251    -    301
UN17183        --> CTGACTGTGCCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- CTGACTGTGCCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
EV565402       <-- CTGACTGTGCCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> CTGACTGTGCCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
EX899601       --> CTGACTGTGCCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
EY903600       --> CTGACTGTACCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
FY452511       --> CTGACTGAACCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG
EX908206       --> CTGACTGAACCGGTTTGATCAAAGAAACAAAGCTATTGACTAGTAAACCG

               301    -    351
UN17183        --> GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
EV565402       <-- GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> GTAAGAAATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
EX899601       --> GTAAGAGATAAGCGTGGATC-GGTTTAGTTCTGGTGTCATGACAGAAGCA
EY903600       --> GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
FY452511       --> GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA
EX908206       --> GTAAGAGATAAGCGTGGATCCGGTTTAGTTCTGGTGTCATGACAGAAGCA

               351    -    401
UN17183        --> TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA
EV565402       <-- TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA
EX899601       --> TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA
EY903600       --> TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACCTCCTCA
FY452511       --> TCACAAGAACCATAGACAATACAAAGACCATCAAACGTTTCACTTCCTCA
EX908206       --> TCACAAGAACCATAGACAATACAAAGACCACCAAACGTTTCACTTCCTCA

               401    -    451
UN17183        --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
EV565402       <-- TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
EX899601       --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
EY903600       --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
FY452511       --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCAGGAAGAGCAGGGATTCT
EX908206       --> TTGTACAGACTGGGTTGGGAGGAGGCTGCAGCGGGAAAAACAGGGATTCT

               451    -    501
UN17183        --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGAAGGCCATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGAAGGCCATG
EV565402       <-- AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGAAGGCCATG
FD549474       <-- ..................................................
FY432023       <-- ..................................................
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAaaa..........
EX899601       --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGAAGGCCATG
EY903600       --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGAAGGCCATG
FY452511       --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAGAAGCAGGCCATG
EX908206       --> AACAGGTTTTTTACAGGTAGAGGCTGAGGATTGAGAAaaaa.........

               501    -    551
UN17183        --> GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
EV565402       <-- GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
FD549474       <-- ....................AGATCACAAGTGAAGCTTAT-CCAGTGTCT
FY432023       <-- ....................AGATCACAAGTGAAGCTTATTCCAGTGTCT
FY432308       <-- ..................................................
FY432984       <-- ..................................................
FD545532       --> ..................................................
EX899601       --> GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
EY903600       --> GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
FY452511       --> GGGCTGGAATGTTGTCATTGAGATCACAAGTGAAGCTTATTCCAGTGTCT
EX908206       --> ..................................................

               551    -    601
UN17183        --> TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAGACAACCAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- TGATCGAATATAGCATCGGATGGTAAACTTGGTAATAGACAACCAGATTC  Raphanus raphanistrum subsp. landra
EV565402       <-- TGATCGAATATAGCATCGGATGGTAAACTTGGTAATAGACAACCAGATTC  Raphanus raphanistrum subsp. landra
FD549474       <-- TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAGACAACCAGATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432023       <-- TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAGACAACCTGATTC  Raphanus sativus cv GSK3-1
FY432308       <-- ..................................................  Raphanus sativus cv GSK3-1
FY432984       <-- ..................................................  Raphanus sativus cv GSK3-1
FD545532       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899601       --> TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAGACAACCAGATTC  Raphanus sativus cv Early Scarlet Globe
EY903600       --> TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAAACAACCTGATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452511       --> TGATCGAATATAGCATCGGATGGTAAGCTTGGTAATAGACAACCTGATTC  Raphanus sativus cv GSK3-1
EX908206       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               601    -    651
UN17183        --> TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
EV565402       <-- TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
FD549474       <-- TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
FY432023       <-- TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
FY432308       <-- ...............AAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
FY432984       <-- ................................GACTTATATGACAAGCAG
FD545532       --> ..................................................
EX899601       --> TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
EY903600       --> TTGGTTTCCAACTTGAAGAGAGAAGTCTTTGAGACTTATATGACAAGCTG
FY452511       --> TTGGTTTCCAACTTGAAGGGAGAAGTCTTTGAGACTTATATGACAAGCAG
EX908206       --> ..................................................

               651    -    701
UN17183        --> TGAAGACATTCTTAGTGATGTTTAGCTTCTGAAGCTTTGTCCCAAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- TGAAGACATTCTTAGTGATGTTCAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus raphanistrum subsp. landra
EV565402       <-- TGAAGACATTCTTAGTGATGTTCAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus raphanistrum subsp. landra
FD549474       <-- TGAAGACATTCTTAGTGATGTTCAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432023       <-- TGAAGACATTCTTAGTGATGTTTAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus sativus cv GSK3-1
FY432308       <-- TGAAGACATTCTTAGTGATGTTTAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus sativus cv GSK3-1
FY432984       <-- TGAAGACATTCTTAGTGATGTTTAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus sativus cv GSK3-1
FD545532       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899601       --> TGAAGACATTCTTAGTGATGTTCAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus sativus cv Early Scarlet Globe
EY903600       --> TGAAGAC...........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452511       --> TGAAGACATTCTTAGTGATGTTTAGCTTCTGAAGCTTTGTCCCAAGAGAG  Raphanus sativus cv GSK3-1
EX908206       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               701    -    751
UN17183        --> GTTGCGCAATCCAATGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- GTTGCGCAATCCAATGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus raphanistrum subsp. landra
EV565402       <-- GTTGCGCAATCCAATGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus raphanistrum subsp. landra
FD549474       <-- GTTGCGCAATCCAATGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY432023       <-- GTTGCGCAATCCAAGGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus sativus cv GSK3-1
FY432308       <-- GTTGCGCAATCCAAGGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus sativus cv GSK3-1
FY432984       <-- GTTGCGCAATCCAAGGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus sativus cv GSK3-1
FD545532       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899601       --> GTTGCGCAATCCAATGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus sativus cv Early Scarlet Globe
EY903600       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY452511       --> GTTGCGCAATCCAAGGCTTGCAAGTTAGTTATAAGCGATTGCTTCTGCAG  Raphanus sativus cv GSK3-1
EX908206       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870

               751    -    801
UN17183        --> ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCGTTTGGTTACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCATTTGGTTACTCA
EV565402       <-- ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCATTTGGTTACTCA
FD549474       <-- ATGAGACACGTAGCTCTCCATTGCCAGGCAGCAACTCGTTTGGTTACTCA
FY432023       <-- ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCGTTTGGTTACTCA
FY432308       <-- ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCGTTTGGTTACTCA
FY432984       <-- ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCGTTTGGTTACTCA
FD545532       --> ..................................................
EX899601       --> ATGAGACACATAGCTCTCCATTG...........................
EY903600       --> ..................................................
FY452511       --> ATGAGACACGTAGCTCTCCATTGCCCGGCAGCAACTCGTTTGGTTACTCA
EX908206       --> ..................................................

               801    -    851
UN17183        --> ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGTGCGGAAACACAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGc..............
EV565402       <-- ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGc..............
FD549474       <-- ACTCGTTGCTGCAGTTACCACTGACGTGTCTCATGTGCGGAAACACAAGA
FY432023       <-- ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGTGCGGAAACACAAGA
FY432308       <-- ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGTGCGGAAACACAAGA
FY432984       <-- ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGTGCGGAAACACAAGA
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ACTCGTTGCTGCAGTTACCACTGATGTGTCTCATGTGCGGAAACACAAGA
EX908206       --> ..................................................

               851    -    901
UN17183        --> GGACAAACTCTATTGATTTTGCAGTTTGCTAAACCTCTGAGAGTTTCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- GGACAAACTCTATTGATTTTACAGTTTGCTAAACCTCTGAGAGTTGCCTT
FY432023       <-- GGACAAACTCTATTGATTTTGCAGTTTGCTAAACCTCTGAGAGTTTCCTT
FY432308       <-- GGACAAACTCTATTGATTTTGCAGTTTGCTAAACCTCTGAGAGTTTCCTT
FY432984       <-- GGACAAACTCTATTGATTTTGCAGTTTGCTAAACCTCTGAGAGTTTCCTT
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> GGACAAACTCTATTGATTTTGCAGTTTGCTA...................
EX908206       --> ..................................................

               901    -    951
UN17183        --> AGCCTGAGAAGGGTTCAGTTTAGTAGCAAGCCAACGGTGAACTACGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- AGCCTGAGAAGGGTTCAGTTTAGTAGCGAGCCAACGGTGAACTACGTTCT
FY432023       <-- AGCCTGAGAAGGGTTCAGTTTAGTAGCAAGCCAACGGTGAACTACGTTCT
FY432308       <-- AGCCTGAGAAGGGTTCAGTTTAGTAGCAAGCCAACGGTGAACTACGTTCT
FY432984       <-- AGCCTGAGAAGGGTTCAGTTTAGTAGCAAGCCAACGGTGAACTACGTTCT
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               951    -   1001
UN17183        --> TGCAATCACTGATCCTATCCGAGTTATCCATCAAAGGCTCAGATGCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- TGCAATCACTGATCCTATCCGAGTTATCCATCAAAGTCTCAGATGCTTTG
FY432023       <-- TGCAATCACTGATCCTATCCGAGTTATCCATCAAAGGCTCAGATGCTTTC
FY432308       <-- TGCAATCACTGATCCTATCCGAGTTATCCATCAAAGGCTCAGATGCTTTC
FY432984       <-- TGCAATCACTGATCCTATCCGAGTTATCCATCAAAGGCTCAGATGCTTTC
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1001   -   1051
UN17183        --> ACAGTAATATTCGTAGCTGCGTCGAGTATGGCGTTTTGGCAAGCCTGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- AGAGTAATATTCGTAGCTGCGTCGAGTATAGCGTTTTGGCAAGCCTGCTC
FY432023       <-- ACAGTAATATTCGTAGCTGCGTCGAGTATGGCGTTTTGGCAAGCCTGCTC
FY432308       <-- ACAGTAATATTCGTAGCTGCGTCGAGTATGGCGTTTTGGCAAGCCTGCTC
FY432984       <-- ACAGTAATATTCGTAGCTGCGTCGAGTATGGCGTTTTGGCAAGCCTGCTC
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1051   -   1101
UN17183        --> GCAACACTCCTTGACAGGATCAACTCTCTCGCAAGCCAAAAGAAGCTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- GCAACACTCCTTGACAGGATCAACTCTCTCACAAGCCAAAAGAAGCTTAG
FY432023       <-- GCAACACTCCTTGACAGGATCAACTCTCTCGCAAGCCAAAAGAAGCTTAG
FY432308       <-- GCAACACTCCTTGACAGGATCAACTCTCTCGCAAGCCAAAAGAAGCTTAG
FY432984       <-- GCAACACTCCTTGACAGGATCAACTCTCTCGCAAGCCAAAAGAAGCTTAG
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1101   -   1151
UN17183        --> ACGTATCCACCGCGCTTTCGAACTCATCCACGTCGATCACAGGGCAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- ACGTATCCACCGCGGTTTCGAACTCATCCACGTCGATCACAGGGCAGGAA
FY432023       <-- ACGTATCCACCGCGCTTTCGAACTCATCCACGTCGATCACAGGGCAGGAA
FY432308       <-- ACGTATCCACCGCGCTTTCGAACTCATCCACGTCGATCACAGGGCAGGAA
FY432984       <-- ACGTATCCACCGCGCTTTCGAACTCATCCACGTCGATCACAGGGCAGGAA
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1151   -   1201
UN17183        --> GAAGCGGTGAGATTCGACGAGCGAAGCGAACATATCCTCCCGAGCTCGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- GAAGCGGTGAGATTCGACGAGCGAATCGAACATATCCTCCCGAGCTCGCC
FY432023       <-- GAAGCGGTGAGATTCGACGAGCGAAGCGAACATATCCTCCCGAGCTCGCC
FY432308       <-- GAAGCGGTGAGATTCGACGAGCGAAGCGAACATATCCTCCCGAGCTCGCC
FY432984       <-- GAAGCGGTGAGATTCGACGAGCGAAGCGAACATATCCTCCCGAGCTCGCC
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1201   -   1251
UN17183        --> GGAACCGCCTCTGCCCACCAAGATCTGCTCTAAATCCGAGAGACAGTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- GGAACCGCCTCTGCCCACCAAGATCTGCTCTAAATCCGAc..........
FY432023       <-- GGAACCGCCTCTGCCCACCAAGATCTGCTCTAAATCCGAGAGACAGTGCT
FY432308       <-- GGAACCGCCTCTGCCCACCAAGATCTGCTCTAAATCCGAGAGACAGTGCT
FY432984       <-- GGAACCGCCTCTGCCCACCAAGATCTGCTCTAAATCCGAGAGACAGTGCT
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1251   -   1301
UN17183        --> TAGACTGAGTTCTGTTTAGTGCAAGGAGACCGGTCTCTTCGCTAGCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- ..................................................
FY432023       <-- TAGACTGAGTTCTGTTTAGTGCAAGGAGACCGGTCTCTTCGCTAGCTTTG
FY432308       <-- TAGACTGAGTTCTGTTTAGTGCAAGGAGACCGGTCTCTTCGCTAGCTTTG
FY432984       <-- TAGACTGAGTTCTGTTTAGTGCAAGGAGACCGGTCTCTTCGCTAGCTTTG
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1301   -   1351
UN17183        --> CCGAGGATGATGGTGAGAGTAGCGTCTAGCTGAGGACAGCACATGACGT-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ..................................................
EV565402       <-- ..................................................
FD549474       <-- ..................................................
FY432023       <-- CCGAGGATGATGGTGAGAGTAGCGTCTAGCTGAGGACAGCACATGACGT-
FY432308       <-- CCGAGGATGATGGTGAGAGTAGCGTCTAGCTGAGGACAGCACATGACGTT
FY432984       <-- CCGAGGATGATGGTGAGAGTAGCGTCTAGCTGAGGACAGCACATGACGT-
FD545532       --> ..................................................
EX899601       --> ..................................................
EY903600       --> ..................................................
FY452511       --> ..................................................
EX908206       --> ..................................................

               1351   -   1401
UN17183        --> GGCTAACAGGGAGCGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~
EV565401       <-- ....................
EV565402       <-- ....................
FD549474       <-- ....................
FY432023       <-- GGCTAACAGGGAGCGAAGAC
FY432308       <-- GGCTAACAGGGAGCGAAGAC
FY432984       <-- GGCTAACAGGGAGCGAAGAC
FD545532       --> ....................
EX899601       --> ....................
EY903600       --> ....................
FY452511       --> ....................
EX908206       --> ....................