1      -     51
UN17186        --> GTCTCTCAATCTCTACTATCTTCTTCTTCTCTCCCCCGAGCTCCTCACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ..................................................
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> GTCTCTCAATCTCTACTATCTTCTTCTTCTCTCCCCCGAGCTCCTCACCT
EV536097       --> ........................................ggCCTCATCT
FD535289       --> ......................................ggccCCTCACCT
EV527084       --> ..................................................

               51     -    101
UN17186        --> GGTT-GACTCAACAACGACTCTGCCGTTCCCTTTTAGCAGCCATGACGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ..................................................
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> GGTT-GACTCAACAACGACTCTGCCGTTCCCTTTTAGCAGCCATGACGAC
EV536097       --> GGTT-GACTCAACAACGACTCTGCCGTTCCCTTTTAGCAGCCATGACGAC
FD535289       --> GGTTTGACTCAACAACGACTCTGCCGTTCCCTTTTAGCAGCCATGACGAC
EV527084       --> .................agggacttcgtccaagtggattGCCATGACGAC

               101    -    151
UN17186        --> AACTTCTCCTTGCAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ..................................................
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> AACTTCTCCTTGCAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGC
EV536097       --> AACTCCTCCTTGCAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGC
FD535289       --> AACTTCTCCTTGCAGGACCATAAACGCTAATAATGCTGTCACCGCGCCGC
EV527084       --> AACTTCTCCTTGCAGGACCATAAACGCTAATAATGCAGTCACCGCGCCGC

               151    -    201
UN17186        --> CGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTTCGTTCCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ..................................................
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> CGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTTCGTTCCGATC
EV536097       --> CGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTTCGTTCCGATC
FD535289       --> CGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTTCGTTCCGATC
EV527084       --> CGTCGCCTTCGGGAATGATCTTCCACGGCTGTCGTGATTTCGTTCCGATC

               201    -    251
UN17186        --> GATAAGAGACTTGTCAAATCAAGCTCACGTGGATTGAATTTGCCGACGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- .............................................ACGAA
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> GATAGGAGACTTGTCAAATCAAGCTCACGTGGATTGAATTTGCCGACAAA
EV536097       --> GATAAGAGACTTGTCAAACCAAGCTCACGTGGATTGAATTTGCCGACGAA
FD535289       --> GATAAGAGACTTGTCAAATCAAGCTCACGTGGATTGAATTTGCCGACGAA
EV527084       --> GATAAGAGACTTGTCAAATCAAGCTCACGTGGATTGAATTTGCCGACGAA

               251    -    301
UN17186        --> GAGATTGGCTTGGAGCTTAAGTTCTCCGGGGAGGT---CGCTCTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- GAGATTGGCTTGGAGCTTAAGTTCTCCGGGGAGGT---CGCTCTCTTCTT
EV540621       <-- ..................................................
FD530979       <-- ..................................................
FY436105       --> GAGATTGGCTTGGAGCTTAAGTTCTCCGGGGAGGT---CGCTCTCTTCTT
EV536097       --> GAGATTGGCGTGGAGCTTAAGTTCTCCGGGGAGGTTGTTGCTCTCTTCTT
FD535289       --> GAGATTGGCTTTGAGCTTAAGTTCTCCGGGGAGGT---CGCTCTCTTCTT
EV527084       --> GAGATTGGCTTTGAGCTTAAGTTCTCCGGGGAGGT---CGCTCTCTTCTT

               301    -    351
UN17186        --> CT------CCCGTGGCGTCTAGTTCTACATCGGCGGCTGTGACATCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- CT------CCCGTGGCGTCTAGTTCTACATCGGCGGCTGTGACATCGAAT
EV540621       <-- ......................TTCTACATCGGCGACTGTGACATCGAAT
FD530979       <-- ..................................................
FY436105       --> CT------CCCGTCGCGTCTAGTTCTAGATCGGCGGCTGTGACATCGAAT
EV536097       --> CTTCTTCTCCCGTGGCGTCTAGTTCTACATCGGCGACTGTGACATCGAAT
FD535289       --> CT------CCCGTGGCGTCTAGTTCTACATCGGCGGCTGTGACATCGAAT
EV527084       --> CT------CCCGTGGCGTCTAGTTCTACATCGGCGGCTGTGACATCGAAT

               351    -    401
UN17186        --> TCTTCGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- TCTTCGAATCAGTTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
EV540621       <-- TCTTCGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
FD530979       <-- ...........ATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
FY436105       --> TTATCGAATGGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
EV536097       --> TCTTCGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
FD535289       --> TCTTCGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA
EV527084       --> TCTTCGAATCGATTGGAAGCTTTAGAAGAGGGGATTGAGAAGGTCATTTA

               401    -    451
UN17186        --> TACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- TACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540621       <-- TACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530979       <-- TAGATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. maritimus
FY436105       --> TACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus sativus cv GSK3-1
EV536097       --> TACATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535289       --> TAGATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. maritimus
EV527084       --> TAGATGTCGATTCATGGCGTTTCTTGGAACATTAGGATCTCTTTTCGGTT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN17186        --> CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTG
EV540621       <-- CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTG
FD530979       <-- CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGACAGACTCGTTTGTG
FY436105       --> CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTG
EV536097       --> CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGGCAGACTCGTTTGTG
FD535289       --> CGGTTCTGTGTTTCATCAAGGGATGTCAGTACGTGACAGACTCGTTTGTG
EV527084       --> CGGTTCTGTGTTTCATCAAGGGGTGTCAGTACGTGGCAGACTCGTTTGTG

               501    -    551
UN17186        --> CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
EV540621       <-- CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
FD530979       <-- CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
FY436105       --> CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
EV536097       --> CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
FD535289       --> CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT
EV527084       --> CAGTACACTGTGAATCGCGGGAAGGTGATTTTACTTCTGGTAGAAGCTAT

               551    -    601
UN17186        --> AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- AGATACATATCTTCTAGGAACTGTGATGTTAGTCTTTGGAATGGGACTTT
EV540621       <-- AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
FD530979       <-- AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
FY436105       --> AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
EV536097       --> AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
FD535289       --> AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT
EV527084       --> AGATACATATCTTCTAGGAACTGTGATGTTGGTCTTTGGAATGGGACTTT

               601    -    651
UN17186        --> ACGAGCTTTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ACGAGCTGTTCATTAGCAACCTCACGACTTCAGAAACTATTTCACACGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV540621       <-- ACGAGCTGTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD530979       <-- ACGAGCTTTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT  Raphanus raphanistrum subsp. maritimus
FY436105       --> A.................................................  Raphanus sativus cv GSK3-1
EV536097       --> ACGAGCTGTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD535289       --> ACGAGCTTTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT  Raphanus raphanistrum subsp. maritimus
EV527084       --> ACGAGCTTTTCATTAGCAACCTCACGACTTCAGAAACGATTTCACACGAT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17186        --> AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
EV540621       <-- AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
FD530979       <-- AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
FY436105       --> ..................................................
EV536097       --> AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
FD535289       --> AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG
EV527084       --> AATGTTTCCAATAGATCGAGTCTCTTTGGCATGTTCCCCTTAAAGGAGCG

               701    -    751
UN17186        --> ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAGCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTCAAAACGAAGCTAG
EV540621       <-- ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAGCTGG
FD530979       <-- ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAGCTGG
FY436105       --> ..................................................
EV536097       --> ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAGCTGG
FD535289       --> ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAA..........
EV527084       --> ACCTCAATGGTTAGAGGTGAAAACAGTTAGTGAGCTGAAAACGAAG....

               751    -    801
UN17186        --> GACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGAGCAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- GACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGAGCAGG
EV540621       <-- GACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGAGCAGG
FD530979       <-- GACATGTTATAGTGATGCTCCTGTTGATTGGCTTGTTCGACAAGAGCAGG
FY436105       --> ..................................................
EV536097       --> GACATGTTATAGTGATGCTACTGTTGATTGGTTTGTTCGACAAGA.....
FD535289       --> ..................................................
EV527084       --> ..................................................

               801    -    851
UN17186        --> AAAGTTGCTATAACTTCTGTCGCCGACTTGCTATGTATCTCTGCTTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- AAAGTTGCTATAACTTCTGTCGCCGACTTGCTATGTATCTCTGCTTCTAT
EV540621       <-- AAAGTTGCTATAACTTCTGTCGCGGATTTGCTATGTATCTCTGCTTCTAT
FD530979       <-- AAAGTTGCTATAACTTCTGTCGCCGACTTGCTATGTATCTCTGCTTCTAT
FY436105       --> ..................................................
EV536097       --> ..................................................
FD535289       --> ..................................................
EV527084       --> ..................................................

               851    -    901
UN17186        --> CTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGGCTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- CTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGGCTCAC
EV540621       <-- CTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGGCTCAC
FD530979       <-- CTTTCTTTCTTCGGCTTGTCTCTTCTTGCTCTCTAGGCTCAATGGCTCAC
FY436105       --> ..................................................
EV536097       --> ..................................................
FD535289       --> ..................................................
EV527084       --> ..................................................

               901    -    951
UN17186        --> ACTGAGCTAACAGCGTTGCCTTT-AAACATATGAAACTTTGTATGATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- ACTGAGCTAATAGCGTTGCCTTT-AAACATATGAAACTTTGTATGATGTG
EV540621       <-- ACTGAGCTAACAGCGTTACCTTT-AAACATATGAAGCTTTGTATGATGTG
FD530979       <-- ACTGAGCTAACAGCGTTGCCTTTTAAACATATGAAACTTTGTATGATGTG
FY436105       --> ..................................................
EV536097       --> ..................................................
FD535289       --> ..................................................
EV527084       --> ..................................................

               951    -   1001
UN17186        --> TATAATGTTTTAGTAAAATTT-CACATTCTCTTTTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD547794       <-- TATAATGTTTTAGTAAAATTT-CACATTCTCTTTTGCCt
EV540621       <-- TATAATGTTTTAGTAAAATTTTCACATTCTCTTTTGCCC
FD530979       <-- TATAATGTTTTAGTAAAATTT-CAC..............
FY436105       --> .......................................
EV536097       --> .......................................
FD535289       --> .......................................
EV527084       --> .......................................