1      -     51
UN17207        --> GGGTTGGCTCTCGACATGTCGACCTCTCCTTATGTGAGGATCGGAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................
EX892816       <-- ..................................................
EV540303       <-- ..................................................
EV547401       <-- ..................................................
FD537763       <-- ..................................................
FD934242       <-- ..................................................
FD951811       <-- ..................................................
EY943237       <-- ..................................................
FD575700       <-- ..................................................
FD575052       <-- ..................................................
EX754813       --> GGGTTGGCTCTCGACATGTCGACCTCTCCTTATGTGAGGATCGGAGATGA
EX758340       --> GGGTTGGCTCTCGACATGTCGACCTCTCCTTATGTGAGGATCGGAGATGA
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> ..................................................

               51     -    101
UN17207        --> GTCTTGTCTTTCTGAAATCTATTTCTGGGGATCTCGACTTGTTCTTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> GTCTTGTCTTTCTGAAATCTATTTCTGGGGATCTCGACTTGTTCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> GTCTTGTCTTTCTGAAATCTATTTCTGGGGATCTCGACTTGTTCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> ..............ggATCTATTTCTGGGGATCTCGACTTGTTCTTTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> .......ggatttctggcgggggaggagcGATCTCGACTTGTTCTTTTGA  Raphanus raphanistrum subsp. landra
EX888984       --> .............ggggtgggggaggagcGATCTCGACTTGTTCTTTTGA  Raphanus sativus var. oleiformis
EX895284       --> ..............ggaaggaggaggagcGATCTCGACTTGTTCTTTTGA  Raphanus sativus cv Early Scarlet Globe
EY947311       --> .....ggattttctggaaggaggaggagcGATCTCGACTTGTTCTTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> .............ggggtgggggaggagcGATCTCGACTTGTT--TTCGA  Raphanus sativus cv Early Scarlet Globe
EW733006       --> ........ggagctggaaggaggaggagcggTCTCGACTTGTTCTTTTGA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ................................................GA  Raphanus raphanistrum subsp. landra
EV552490       --> ................................................ga  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ................................................ga  Raphanus raphanistrum subsp. maritimus
FD965121       --> ................................................ga  Raphanus raphanistrum subsp. maritimus
EY914642       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               101    -    151
UN17207        --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> TCTCTGGTAAGATTGTTCAACGAa..........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> TCTCTGGTAAGATTGTTCAACGAAGAAGATGATGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> TCTCTGGTAAGATTGTTCAACGAAGAAGATGATGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. landra
EX888984       --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus sativus var. oleiformis
EX895284       --> TCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus sativus cv Early Scarlet Globe
EY947311       --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus sativus cv Early Scarlet Globe
EW733006       --> CCTCTGGTAAGATTGTTCGACGACGAGGATGATGAAGATGCAGCGAATTG  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> CCTCTGGTAAGATTGTTCGACGACGAAGATGATGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. landra
EV552490       --> tCTCTGGTAAGATTGTTCGACGACGAAGATGACGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> tCTCTGGTGAGATTGTTCGACGACGAAGATGACGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. maritimus
FD965121       --> tCTCTGGTAAGATTGTTCGACGACGAAGATGACGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. maritimus
EY914642       --> ...gTGGTAAGATTGTTCGACGACGAAGATGACGAAGATGCAGTGAATTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> ....TGGTAAGATTGTTCGACGACGAAGATGACGAAGATGCAGCGAATTG  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               151    -    201
UN17207        --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................
EX892816       <-- ..................................................
EV540303       <-- ..................................................
EV547401       <-- ..................................................
FD537763       <-- ..................................................
FD934242       <-- ..................................................
FD951811       <-- ..................................................
EY943237       <-- ..................................................
FD575700       <-- ..................................................
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FD970283       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EX772274       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EX888984       --> GTGTGGTGGCGTTTATGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EX895284       --> GTGTGCTGGCGGTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EY947311       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FD571959       --> GTGTGGTGGCGTTTATGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EW733006       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FD557003       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EV552490       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EX750297       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FD965121       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
EY914642       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FD536491       --> GTGTGGTGGCGTTTTTGGTGGCTCTATCTGCGATTGAATTTGGATTGACT
FY428749       --> ...........................CTGCGATTGA-TTTGGATTGACT
FD955802       --> ..................................................
FD937678       --> ..................................................

               201    -    251
UN17207        --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> TCTACCAATACCGTTCCGGCTTTCCTCTGGTCTCCACATCTCCAGCGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> TCTGCCAATACCGTTCCGGCTTTCCTCTGGTCTCCACATCTCCAGCGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGAG-  Raphanus raphanistrum subsp. landra
EX888984       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus var. oleiformis
EX895284       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus cv Early Scarlet Globe
EY947311       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus cv Early Scarlet Globe
EW733006       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGAG-  Raphanus raphanistrum subsp. landra
EV552490       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGGGTG-  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGGGTG-  Raphanus raphanistrum subsp. maritimus
FD965121       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGGGTG-  Raphanus raphanistrum subsp. maritimus
EY914642       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> TCTGCCAATACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus raphanistrum subsp. maritimus
FY428749       --> TCTGCCA-TACCGTTCCTGCTTTCCTCTGGTCTCCGCATCTCCAGCGTG-  Raphanus sativus cv GSK3-1
FD955802       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               251    -    301
UN17207        --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> TAATAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> TAATAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> C--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. landra
EX888984       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus var. oleiformis
EX895284       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus cv Early Scarlet Globe
EY947311       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTACCAGGTGATGTCTGCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus cv Early Scarlet Globe
EW733006       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> C--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. landra
EV552490       --> C--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> C--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. maritimus
FD965121       --> C--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. maritimus
EY914642       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus raphanistrum subsp. maritimus
FY428749       --> T--TAATGGTGAAGTGGATGAGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus cv GSK3-1
FD955802       --> ...................ggGGGTGTAAACTATCAGGTGATGTCTGCGA  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               301    -    351
UN17207        --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................
EX892816       <-- ..................................................
EV540303       <-- ..................................................
EV547401       <-- ..................................................
FD537763       <-- ..................................................
FD934242       <-- ..................................................
FD951811       <-- ..................................................
EY943237       <-- ..................................................
FD575700       <-- ..................................................
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD970283       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EX772274       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EX888984       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EX895284       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EY947311       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD571959       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EW733006       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD557003       --> AGGATCCAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
EV552490       --> AGGATCTAGTAGGCTCTGTTTTCAGTCAAGGAGGATGGTCTAACTTTCTG
EX750297       --> AGGGTCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD965121       --> AGGATCTAGTAGGCTCTGTTTT............................
EY914642       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD536491       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FY428749       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD955802       --> AGGATCTAGTAGGCTCTGTTTTCACTCAAGGAGGATGGTCTAACTTTCTG
FD937678       --> ..................................................

               351    -    401
UN17207        --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> TGCTCGGAAAAGAAAGTTGAGCAATCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> TGCTCGGAAAAGAAAGTTGAGCAATCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> TGCTCGGAGAAGAAAGTTGAGCATGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. landra
EX888984       --> TGCTCGGAGAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus var. oleiformis
EX895284       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus cv Early Scarlet Globe
EY947311       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCGCTTGTGTTCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> TGCTCGGAGAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus cv Early Scarlet Globe
EW733006       --> TGCTCGGACAAGAAAGTTGAGCAGGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> TGCTCGGAGAAGAAAGTTGAGCATGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. landra
EV552490       --> TGCTCGGAGAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus raphanistrum subsp. maritimus
FY428749       --> TGCTCGGACAAGAAAGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus cv GSK3-1
FD955802       --> TGCTCGGACAAGAAGGTTGAGCAAGCTGTTGACGTTGCACTTGTGTTCAT  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               401    -    451
UN17207        --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCGAAAAAGAATTCGGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> CGGCAGAGAGTTAGTGTCTTCTGATGTTTCTTCGAAAAGGAATTCGGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> CGGCAGAGAGTTAGTGTCTTCTGATGTTTCTTCGAAAAGGAATTCGGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> CGGCAGGCAGTTAGTGTCTTCTGATGTTTCTTCGAAAATGAATTCGGACC  Raphanus raphanistrum subsp. landra
EX888984       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGACC  Raphanus sativus var. oleiformis
EX895284       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCCAAAAAGAACTCGGACC  Raphanus sativus cv Early Scarlet Globe
EY947311       --> CGGCAGAGAGTTACTGTCTTCTGAGGTTTCTTCCAAAAAGAACTCGGACC  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGACC  Raphanus sativus cv Early Scarlet Globe
EW733006       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCCAAAAAGAACTCGGACC  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> CGGCAGGCAGTTAGTGTCTTCTGATGTTTCTTCGAAAATGAATTCGGACC  Raphanus raphanistrum subsp. landra
EV552490       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> CGGCAAAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGATC  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> CGGCAAAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGATC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> CGGCAAAGAGTTACTGTCTTCTGATGTTTCCTCGAAAAAGAATTCGGATC  Raphanus raphanistrum subsp. maritimus
FY428749       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCCAAAAAGAACTCGGACC  Raphanus sativus cv GSK3-1
FD955802       --> CGGCAGAGAGTTACTGTCTTCTGATGTTTCTTCCAAAAAGAACTCGGACC  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               451    -    501
UN17207        --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> CTGCCCTTGTTAACACATTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> CTGCCCTTGTTAGCACATTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> CTGCCCTTGTTAACACATTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. landra
EX888984       --> CTGCCCTTGTCAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus sativus var. oleiformis
EX895284       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus sativus cv Early Scarlet Globe
EY947311       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTCACTGCTTCCAACTTCTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> CTGCCCTTGTCAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus sativus cv Early Scarlet Globe
EW733006       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTCACTGCTTCCAACTTCTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> CTGCCCTTGTTTACACATTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. landra
EV552490       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus raphanistrum subsp. maritimus
FY428749       --> CTGCCCTTGTTAACACACTGAATAGTCTGTTTACTGCTTCCAACTTCTCA  Raphanus sativus cv GSK3-1
FD955802       --> TTGCCCTTGTTAACACACTGAATAGTCTGTTCACTGCTTCCAACTTCTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               501    -    551
UN17207        --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ..........................................GAGAATT-  Raphanus raphanistrum subsp. landra
EX892816       <-- ..................................................  Raphanus sativus var. oleiformis
EV540303       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. landra
EX888984       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus sativus var. oleiformis
EX895284       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus sativus cv Early Scarlet Globe
EY947311       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus sativus cv Early Scarlet Globe
EW733006       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. landra
EV552490       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> TTGGCATTCCCATATATCGCTGCGCCAAAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> TTGGCATTCCCATATATCGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus raphanistrum subsp. maritimus
FY428749       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGACTTT  Raphanus sativus cv GSK3-1
FD955802       --> TTGGCATTCCCATATATTGCTGCGCCAGAGGAAGAAAGGATGGAGAATTT  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               551    -    601
UN17207        --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. landra
EX892816       <-- ...................GAAGCTTGCCCAAACAATGTAGGAGTCAGCA  Raphanus sativus var. oleiformis
EV540303       <-- ...................................ATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> GTTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> GTTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. landra
EX888984       --> GTTGCTTTCAGGGCTTAGAGAAGCTTGCCCAAACAATGTAGGAGTCAGCA  Raphanus sativus var. oleiformis
EX895284       --> GTTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAAGAATGTAGGAGTCAGCA  Raphanus sativus cv Early Scarlet Globe
EY947311       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAGCAATGTAGGAGTCAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> GTTGCTTTCAGGGCTTAGAGAAGCTTGCCCAAACAATGTAGGAGTCAGCA  Raphanus sativus cv Early Scarlet Globe
EW733006       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAGCAATGTAGGAGTCAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. landra
EV552490       --> ACTGCTTTCAGGGCTTAGAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> ACTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAACAATGTAGGAGTCAGCA  Raphanus raphanistrum subsp. maritimus
FY428749       --> GTTGCTTTCAGGGCTTAAAGAAGCTTGCCCTAAGAATGTAGGAGTCAGCA  Raphanus sativus cv GSK3-1
FD955802       --> ACTGCTTTCAGGGCTTAAATAAGCTTGCCCTAGCAATGTAGGAGTCAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               601    -    651
UN17207        --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCTGAAA  Raphanus raphanistrum subsp. landra
EX892816       <-- ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus var. oleiformis
EV540303       <-- ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- .......CTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- ............................................CAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCTGAAA  Raphanus raphanistrum subsp. landra
EX888984       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus var. oleiformis
EX895284       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus cv Early Scarlet Globe
EY947311       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus cv Early Scarlet Globe
EW733006       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCTGAAA  Raphanus raphanistrum subsp. landra
EV552490       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCTGAA-  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCTGAAA  Raphanus raphanistrum subsp. maritimus
FY428749       --> ATATTGTCTTCTC.....................................  Raphanus sativus cv GSK3-1
FD955802       --> ATATTGTCTTCTCTGATTCTTGCTTTGTTGAAGATGGAACAGTTCAGAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN17207        --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. landra
EX892816       <-- CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus sativus var. oleiformis
EV540303       <-- CTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- CTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ..................................................  Raphanus sativus var. oleiformis
FD951811       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> CTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAA.  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> CTATCAGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. landra
EX888984       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus sativus var. oleiformis
EX895284       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus sativus cv Early Scarlet Globe
EY947311       --> CTATCAGACTTGCAGTCTTTCAAAGATCATTTGTTTGCTAGAAAAGAAAC  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> CTATCTGACCTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus sativus cv Early Scarlet Globe
EW733006       --> CTATCAGACTTGCAGTCTTTCAAAGATCATTTGTTTGCTAGAAAAGAAAC  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGA...  Raphanus raphanistrum subsp. landra
EV552490       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTACTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> CTATCTGACTTGCAGTCTTTCAAAGATCATTTACTTGCTAGAAGAGAAAC  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> CTATCAGACTTGCAGTCTTTCAAAGATCATTTGTTTGCTAGAAAAGAAAC  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> .....gGACTTGCAGTCTTTCAAAGATCATTTGCTTGCTAGAAGAGAAAC  Raphanus sativus var. oleiformis

               701    -    751
UN17207        --> AAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- AAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus raphanistrum subsp. landra
EX892816       <-- AAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGG-TTCCC  Raphanus sativus var. oleiformis
EV540303       <-- AAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- AAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- AAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- ...................................GTTCTGAGGGTTCCC  Raphanus sativus var. oleiformis
FD951811       <-- ...................................GTTCTGAGGGTTCCG  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> AAGAAA-GAAG-AGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> AAGAAAg...........................................  Raphanus raphanistrum subsp. landra
EX888984       --> A.................................................  Raphanus sativus var. oleiformis
EX895284       --> AAGGAAAGAAGGAGAAACCGACTTGGTTGTGCTCTGTTC...........  Raphanus sativus cv Early Scarlet Globe
EY947311       --> AAGAAAAGAAG-AGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGT-CCG  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> AAGAAAAGAAG-AGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCC  Raphanus sativus cv Early Scarlet Globe
EW733006       --> AAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552490       --> AAGAAA-GAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> AAGGAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTC...........  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> AAGAAAAGAAG-AGAAACTGACTTGGTTGTGCTCTGTTCTGAGG-TTCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> AAGGAAAGAAG-AGAAACTGACTTGGTTGTGCTCTGTTCT-AGGGT-CCG  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> AAGAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCG  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> AATAAAAGAAGGAGAAACTGACTTGGTTGTGCTCTGTTCTGAGGGTTCCC  Raphanus sativus var. oleiformis

               751    -    801
UN17207        --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- AATCAATTAGTGAATCCGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus raphanistrum subsp. landra
EX892816       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus var. oleiformis
EV540303       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAACATTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus var. oleiformis
FD951811       <-- AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- ...................CCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGC......  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> ..................................................  Raphanus raphanistrum subsp. landra
EX888984       --> ..................................................  Raphanus sativus var. oleiformis
EX895284       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY947311       --> AATCAATTAGTGA-TCTGGC-ACTCACATTCAGAGCGTGAAgcat.....  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCAT....  Raphanus sativus cv Early Scarlet Globe
EW733006       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552490       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAACATTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAA-CATTGCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> AATCAATTAGTGAATCCGGC-ACTCACATTCAGAGCGTGAAAGCATTGCG  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> AATCAATTAGTGAATCTGGCCACTCACATTCAGAGCGTGAAAGCATTTCG  Raphanus sativus var. oleiformis

               801    -    851
UN17207        --> GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATACACAGCTCTTTA  Raphanus raphanistrum subsp. landra
EX892816       <-- GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATACACAGCTCTTTA  Raphanus sativus var. oleiformis
EV540303       <-- GAACTTGTTAGTTCAGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- GAAATTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- GAACTTGTTAGTTCAGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATACACAGCTCTTTA  Raphanus sativus var. oleiformis
FD951811       <-- GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> ..................................................  Raphanus raphanistrum subsp. landra
EX888984       --> ..................................................  Raphanus sativus var. oleiformis
EX895284       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY947311       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW733006       --> GAACTTGTTAGTTCTGCAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552490       --> GAAATTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> GAAATTGTTAGTTCTGTAGAACAATCTGGCAGTAA-TATACA........  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> GAACTTGTTAGTTCTGTAGAACAATCT.......................  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATATACAGCTCTTTA  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> GAACTTGTTAGTTCTGTAGAACAATCTGGCAGTAAATACACAGCTCTTTA  Raphanus sativus var. oleiformis

               851    -    901
UN17207        --> TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
EX892816       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
EV540303       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
EV547401       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACCCTCCAAAGGTTTC
FD537763       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
FD934242       <-- TGTTTTTGATCCTTATTGGTACACATTTTACAAAACTCTCCAAAGGTTTT
FD951811       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
EY943237       <-- TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC
FD575700       <-- ..................................................
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> TGTTTCTGATCCTTATTGGTACACATCCTACAAA-CTCTCC.........
FD557003       --> ..................................................
EV552490       --> TGTTTCTGATCCTTATTGGTACACATCTTACAAAccctcc..........
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCT...........
FD937678       --> TGTTTCTGATCCTTATTGGTACACATCTTACAAAACTCTCCAAAGGTTTC

               901    -    951
UN17207        --> TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGCGTTGGTGTTTCCACAACCTGT
EX892816       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT
EV540303       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT
EV547401       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGCGTTGGTGTTTCCACAACCTGT
FD537763       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT
FD934242       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT
FD951811       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGCGTTGGTGTTTCCACAACCTGT
EY943237       <-- TAGCTGAAAGCGCTACAGGAAACAGCAGCGTTGGTGTTTCCACAACCTGT
FD575700       <-- .........................................ACAACCTGT
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> TAGCTGAAAGCGCTACAGGAAACAGCAGTGTTGGTGTTTCCACAACCTGT

               951    -   1001
UN17207        --> GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- GATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGG
EX892816       <-- GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGGG
EV540303       <-- GATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGG
EV547401       <-- GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGGG
FD537763       <-- GATGAACTCTGCAAATTTAAGTCATCACTTTTGGAGGGCATACTAGTGGG
FD934242       <-- GATGAACTTTGCAAATTTAAGTCATCGCTTTTGGAAGGCATACTAGTGGG
FD951811       <-- GATGAACTTTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGGG
EY943237       <-- GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGAG
FD575700       <-- GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAGGGCATACTAGTGGG
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> GATGAACTCTGCAAATTTAAGTCATCGCTTTTGGAAGGCATACTAGTGGG

               1001   -   1051
UN17207        --> AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus raphanistrum subsp. landra
EX892816       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus sativus var. oleiformis
EV540303       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCGGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV547401       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537763       <-- AATCGTTTTCCTTCTCATCCTTATCAGTGGACTTTGTTGTATGGCGGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD934242       <-- AATCGTTTTCCTTTTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus sativus var. oleiformis
FD951811       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCGGGTA  Raphanus sativus cv Rat-Tail Radish #3870
EY943237       <-- AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCGGGTA  Raphanus sativus cv Rat-Tail Radish #3870
FD575700       <-- AATCGTTTTCCTTTTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus sativus cv Early Scarlet Globe
FD575052       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX754813       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758340       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970283       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX772274       --> ..................................................  Raphanus raphanistrum subsp. landra
EX888984       --> ..................................................  Raphanus sativus var. oleiformis
EX895284       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY947311       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD571959       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW733006       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD557003       --> ..................................................  Raphanus raphanistrum subsp. landra
EV552490       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750297       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965121       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY914642       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536491       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FY428749       --> ..................................................  Raphanus sativus cv GSK3-1
FD955802       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD937678       --> AATCGTTTTCCTTCTCATCCTCATCAGTGGACTTTGTTGTATGGCCGGTA  Raphanus sativus var. oleiformis

               1051   -   1101
UN17207        --> TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
EX892816       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
EV540303       <-- TTGATACCCCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
EV547401       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
FD537763       <-- TTGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
FD934242       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
FD951811       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
EY943237       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
FD575700       <-- TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> TCGATACACCAACTAGATTCGAGACTCCTCAAGATTCTTGAGCAGTTGAC

               1101   -   1151
UN17207        --> TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
EX892816       <-- TTCTAAAAGAGTCATCCCCACCCTTTGCTTTGCTTTT-GCTTGTGGACGG
EV540303       <-- TTCTAAAAGAGTCACCCCCCCCTTTTGCTTTGCTTTTTGCTTGTGGACGG
EV547401       <-- TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
FD537763       <-- TTCTAAAAGAGTCACCCCCCCCTTTTGCTTTGCTTTTTGCTTGTGGACGG
FD934242       <-- TTCTAAAAGAGTCATCCCCCCCTTTTGCTTTGCTTTT-GCTTGTGGACGG
FD951811       <-- TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
EY943237       <-- TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
FD575700       <-- TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG
FD575052       <-- ..................................................
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> TTCTAAAAGAGTCATCCCCACCTTTTGCTTTGCTTTT-GCTTGTGGACGG

               1151   -   1201
UN17207        --> GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- GTC----TTTTCTTCTGCATAGTGCGTATGGTGAAAAGAGGTATCTCAAT
EX892816       <-- GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
EV540303       <-- GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTG.................
EV547401       <-- GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
FD537763       <-- GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
FD934242       <-- GTCTTTCTTTTTTTTTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
FD951811       <-- GTCTTTCTTTTTTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
EY943237       <-- GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
FD575700       <-- GTCTTTCTTTTTTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT
FD575052       <-- ...................................AA-AGGTATCTCAAT
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> GTCTTTCTTTTCTTCTGCATAGTGCGTATGGTGAAAA-AGGTATCTCAAT

               1201   -   1251
UN17207        --> GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- GTCGATTGTTACATCTGAAAAACAAAAATGGATATGCGATAAAAAAAAGC
EX892816       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
EV540303       <-- ..................................................
EV547401       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
FD537763       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
FD934242       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
FD951811       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
EY943237       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
FD575700       <-- GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC
FD575052       <-- GTCGATTGTTACATCTCAAAAACAAAAAAGGATATGCGATAAAAAAAATC
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> GTCGATTGTTACATCTCAAAAACAAAAATGGATATGCGATAAAAAAA-TC

               1251   -   1301
UN17207        --> CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
EX892816       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
EV540303       <-- ..................................................
EV547401       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAAACGTTAT
FD537763       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
FD934242       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
FD951811       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
EY943237       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
FD575700       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
FD575052       <-- CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> CCCTTGTAACATTTATTCATCTTGTTTGTGAGTCTTTCCTTAA-CGTTAT

               1301   -   1351
UN17207        --> AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- AAATAAATTAATAATGGAGAACGAGTAGAAAAAAACCAGAGAGAGGCTGG
EX892816       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCt............
EV540303       <-- ..................................................
EV547401       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
FD537763       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
FD934242       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACC.............
FD951811       <-- AAAT----TAATAATGGAGAACGAGT........................
EY943237       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
FD575700       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
FD575052       <-- AAAT----TAATAATGGAGAACGAGTA--AAAGAACCAGAGAGAGACTGG
EX754813       --> ..................................................
EX758340       --> ..................................................
FD970283       --> ..................................................
EX772274       --> ..................................................
EX888984       --> ..................................................
EX895284       --> ..................................................
EY947311       --> ..................................................
FD571959       --> ..................................................
EW733006       --> ..................................................
FD557003       --> ..................................................
EV552490       --> ..................................................
EX750297       --> ..................................................
FD965121       --> ..................................................
EY914642       --> ..................................................
FD536491       --> ..................................................
FY428749       --> ..................................................
FD955802       --> ..................................................
FD937678       --> AAAT----TAATAATGGAGAACGAGTA--AAA..................

               1351   -   1401
UN17207        --> AAGAACAACTATATTCTTTTATAAAGTTTGTTATATTTCTTT..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX776267       <-- AAGAAGAACTATATTCTTTTATAAAGTTTTTTATATTc......
EX892816       <-- ............................................
EV540303       <-- ............................................
EV547401       <-- AAGAACAACTATATTCTTTTATAAAGTTTGTTATATTTC.....
FD537763       <-- AAGAACAACTATATTCTTTTATAAAGTTTGT.............
FD934242       <-- ............................................
FD951811       <-- ............................................
EY943237       <-- AAGAACAACTATATTCTTTTATAAAGTTTGT.............
FD575700       <-- AAGAACAACTATATTCTTTTATAAAGTTTGTTATATTTCTTTcc
FD575052       <-- AAGAACAACTATATTCTTTTATAAAGTTTGTTATATTTCTTTt.
EX754813       --> ............................................
EX758340       --> ............................................
FD970283       --> ............................................
EX772274       --> ............................................
EX888984       --> ............................................
EX895284       --> ............................................
EY947311       --> ............................................
FD571959       --> ............................................
EW733006       --> ............................................
FD557003       --> ............................................
EV552490       --> ............................................
EX750297       --> ............................................
FD965121       --> ............................................
EY914642       --> ............................................
FD536491       --> ............................................
FY428749       --> ............................................
FD955802       --> ............................................
FD937678       --> ............................................