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Alignment for radish unigene UN17209

               1      -     51
UN17209        --> GGAGGCAGTGTGCTCTCTCCCTCCCTCCCTTTGCACAAACAAAACTGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- ..................................................  Raphanus sativus cv GSK3-1
FY437624       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433961       <-- ..................................................  Raphanus sativus cv GSK3-1
EV545306       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969312       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> GGAGGCAGTGTGCTCTCTCCCTCCCTCCCTTTGCACAAACAAAACTGGTT  Raphanus sativus var. oleiformis
FD947431       --> GGAGGCAGTGTGCTCTCTCCCTCCCTCCCTTTGCACAAACAAAACTGGTT  Raphanus sativus cv Early Scarlet Globe
EW717009       --> .............gggCTCTCTCCCTCCCTTTGCACAAACAAAACCGGTT  Raphanus sativus var. oleiformis
EX755592       --> .............gggCTCTCTCCCTCCCTTTGCAGAAACAAAACTTGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> .............gggCTCTCTCCCTCCCTTTGCAGAAACAAAACTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..............................TTGCACAAACAAAACTGGTT  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..............................ggGCAGAAACAAAACTTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..........................gacacaaacaAAACGAAACTGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ......................cctttacacaaacaAAACGAAACTGGTT  Raphanus sativus cv GSK3-1
FY447356       --> .................................acaAAACGAAACTGGTT  Raphanus sativus cv GSK3-1
FD551730       --> .............................................TGGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> ..................................................  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> ..................................................  Raphanus raphanistrum subsp. landra
FD557991       --> ..................................................  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               51     -    101
UN17209        --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- ..................................................
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> CTCGCTAAGAGCCCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
FD947431       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
EW717009       --> CTCGCTCAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
EX755592       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
EY916805       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
EX746438       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCTGCTC
EV549929       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
EY914762       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
FY428912       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
FY447356       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
FD551730       --> CTCGCTAAGAGCTCCGACAATGGCTGTCTGCGCAACTCACAGCTCCGGTC
FY437864       --> ..........GCTCCGACA-TGGCTGTCTGCGCAACTCACAGCTCCGGTC
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> ..................................................
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               101    -    151
UN17209        --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- ..................................................
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FD947431       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
EW717009       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
EX755592       --> TCATGATAGCATACGCCGCATCCAAGGACCTCACAGTCCCGTCTCTTTTC
EY916805       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
EX746438       --> TCATGATAGCATACGCCGCATCCAAGGACCTCACAGTCCCGTCTCTTTTC
EV549929       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
EY914762       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FY428912       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FY447356       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FD551730       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FY437864       --> TCATGATAGCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FD561910       --> ........GCATACGCGGCATCCAAGGACCTTACAATCCCGTCTCTTTTC
FD973662       --> .........................GGACCTTACAATCCCGTCTCTTTTC
FY435604       --> ...................................ATCCCGTCTCATTTC
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> ..................................................
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               151    -    201
UN17209        --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- ..................................................  Raphanus sativus cv GSK3-1
FY437624       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433961       <-- ..................................................  Raphanus sativus cv GSK3-1
EV545306       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969312       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> TCATTTGCCAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus var. oleiformis
FD947431       --> TCATTTGCCAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus cv Early Scarlet Globe
EW717009       --> TCATTTGCCAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus var. oleiformis
EX755592       --> TCATTTGCCAACCCTAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> TCATTTGCGAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCTCC  Raphanus raphanistrum subsp. maritimus
EV549929       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus cv GSK3-1
FY447356       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus cv GSK3-1
FD551730       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> TCATTGGCCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus cv GSK3-1
FD561910       --> TCATTTGCCAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus var. oleiformis
FD973662       --> TCATTTGCCAACCCAAGACCCAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> TCATTGGGCAACCCAAGACCAAACAACTTGAGCGTCGCACTCTGTCCCCC  Raphanus sativus cv GSK3-1
FD962048       --> ...........................gTGAGCGTCGCACTCTGTCCCCC  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> ..................................................  Raphanus raphanistrum subsp. landra
FD557991       --> ..................................................  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               201    -    251
UN17209        --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- ..................................................  Raphanus sativus cv GSK3-1
FY437624       <-- ..................................................  Raphanus sativus cv GSK3-1
FY433961       <-- ..................................................  Raphanus sativus cv GSK3-1
EV545306       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD969312       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus sativus var. oleiformis
FD947431       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGACTCGAACAGGTCCTTGCCGGTA  Raphanus sativus cv Early Scarlet Globe
EW717009       --> TCT-TGTTCTCCTTGGGGCTAGAAGAGGCTCGAACCGATCCTTCCCGGTA  Raphanus sativus var. oleiformis
EX755592       --> TCT-TGTTGTCCTTGGGGGTAGAAGAGGCTCGAACCGATCCTTCCCGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> TCT-TGTTCTCCTTGGGGCTAGAAGAGGCTCGAACCGATCCTTGCCGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCCAACCGATCCTTCCCGGTA  Raphanus raphanistrum subsp. maritimus
EV549929       --> TCT-TGTTCTCCTTGGGGCTAGAAGAGGCTCGAACCGATCCTTGCCGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus sativus cv GSK3-1
FY447356       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus sativus cv GSK3-1
FD551730       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGACTCGAACAGATCCTTGCCGGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus sativus cv GSK3-1
FD561910       --> TCT-TGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus sativus var. oleiformis
FD973662       --> TCT-TGTTCTCCTTGGGGCTAGAAGAGGCTCGAACCGATCCTTCCCGGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> TCTATGTTCTCCTTGGGGGTAGAAGAGGCTCGAACAGATCCTTGC.....  Raphanus sativus cv GSK3-1
FD962048       --> CCT-TGTTCTCCTTGGGGGTAAAAGAGGCTCGAACAGATCCTTGCCGGTA  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> ..................................................  Raphanus raphanistrum subsp. landra
FD557991       --> ..................................................  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN17209        --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- ..................................................
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FD947431       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
EW717009       --> GTTGTATCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAGGACGC
EX755592       --> GTTGTCTTAGCCGTCGCAGCAGAGGCAGATGTCGACACGGAGGAGGACGC
EY916805       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATATAGACACGGAGGAAGACGC
EX746438       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
EV549929       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATATAGACACGGAGGAAGACGC
EY914762       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FY428912       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FY447356       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FD551730       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FY437864       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FD561910       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FD973662       --> GTTGTATCAGCCGTCGCAGCAGAGGCTGATGTCGACACGGAGGAGGACGC
FY435604       --> ..................................................
FD962048       --> GTGGTCTCAGCCGTCGCAGCAGAGGCTGATGTAGACACGGAGGAAGACGC
FD938658       --> ..................................ggACGGAGGAAGACGC
EY905249       --> .................................................g
EV535068       --> ..................................................
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               301    -    351
UN17209        --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................................................
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- ..................................................
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FD947431       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
EW717009       --> GGAGCAGAATGAAGCAACCTCAACCGCCACAGCCGTCCTTGATCCGCCGA
EX755592       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
EY916805       --> GGAGCAGAATGAAGCCACCTCAACCGCCACAGCCGTCCTTGATCCGCCGA
EX746438       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
EV549929       --> GGAGCAGAATGAAGCCACCTCAACCGCCACAGCCGTCCTTGATCCGCCGA
EY914762       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FY428912       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FY447356       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FD551730       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FY437864       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FD561910       --> GGATCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FD973662       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FY435604       --> ..................................................
FD962048       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
FD938658       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
EY905249       --> GGAGCAGAATGAAGCCACCTCCACCGCCACAGCCGTCCTTGATCCGCCGA
EV535068       --> ..................................................
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               351    -    401
UN17209        --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- .................................AGAGGGATAGAACAAGG
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- ..................................................
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FD947431       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EW717009       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EX755592       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EY916805       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EX746438       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EV549929       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EY914762       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FY428912       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FY447356       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FD551730       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FY437864       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FD561910       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FD973662       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FY435604       --> ..................................................
FD962048       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
FD938658       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EY905249       --> AGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EV535068       --> gGCCTAAGAAAGGAAAAGCCGCTTTGCTTCTAAAGAGAGATAGAACAAGG
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               401    -    451
UN17209        --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FY434760       <-- ...............................GGGAAACCAAAAAGGAGTA
FY437624       <-- ....................................ACCAAAAAGGAGTA
FY433961       <-- .....................................CCAAAAAGGAGTA
EV545306       <-- ..................................................
EV573338       <-- ..................................................
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGCA
FD947431       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EW717009       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EX755592       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EY916805       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EX746438       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EV549929       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EY914762       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FY428912       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FY447356       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FD551730       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FY437864       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FD561910       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FD973662       --> TCTAAGAGGTTTCTGGAAATTCAAAAACTAAGGGAAACCAAAAAGGAGTA
FY435604       --> ..................................................
FD962048       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
FD938658       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EY905249       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EV535068       --> TCTAAGAGGTTTCTGGAAATTCAAAAGCTAAGGGAAACCAAAAAGGAGTA
EV568670       --> ..................................................
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               451    -    501
UN17209        --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACTGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv GSK3-1
FY437624       <-- CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv GSK3-1
FY433961       <-- CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv GSK3-1
EV545306       <-- .......................................TAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- ...............................................GGT  Raphanus raphanistrum subsp. landra
FD969312       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> CGACGTAAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus var. oleiformis
FD947431       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv Early Scarlet Globe
EW717009       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus var. oleiformis
EX755592       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. maritimus
EV549929       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> CGACGTCAAGACTGCTGTATCTTTGCTC......................  Raphanus sativus cv GSK3-1
FY447356       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv GSK3-1
FD551730       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus cv GSK3-1
FD561910       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus var. oleiformis
FD973662       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAA-CCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. maritimus
FD938658       --> CGACGTCAAGACTGCTGTATCCTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus sativus var. oleiformis
EY905249       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> CGACGTCAAGACTGCTGTATCTTTGCTCAAGCAAACCGCTAACACAAGGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> ...............................................GGT  Raphanus raphanistrum subsp. landra
FD557991       --> ..................................................  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17209        --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY434760       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY437624       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY433961       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EV545306       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EV573338       <-- TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCCCAAAGTA
FD969312       <-- ...............AAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD958678       <-- ..............................TCAACATCGATCC-AAAGTA
EY912416       <-- ..................................................
EX750842       <-- ..................................................
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> TTGTGGAGTCTGTTGAAGCCCATTTCCGTCTCAACGTCGATCC-AAAGTA
FD947431       --> TTGTGGAGTCTGTTGAAGCCCATTTCCGTCTCAATATCGATCC-AAAGTA
EW717009       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGGTCC-AAAGTA
EX755592       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EY916805       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EX746438       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EV549929       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EY914762       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY428912       --> ..................................................
FY447356       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD551730       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY437864       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD561910       --> TTGTGGAGTCTGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD973662       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FY435604       --> ..................................................
FD962048       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD938658       --> TTGTGGAGTCTGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EY905249       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EV535068       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
EV568670       --> TTGTGGAGTCGGTTGAAGCCCATTTCCGTCTCAACATCGATCC-AAAGTA
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               551    -    601
UN17209        --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv GSK3-1
FY437624       <-- CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv GSK3-1
FY433961       <-- CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv GSK3-1
EV545306       <-- CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAAAGGAACAGGA  Raphanus raphanistrum subsp. landra
FD969312       <-- CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ......................................AA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- .......................................A-GGAACAGGA  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus var. oleiformis
FD947431       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv Early Scarlet Globe
EW717009       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus var. oleiformis
EX755592       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCT.................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. maritimus
EV549929       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCT.............  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv GSK3-1
FD551730       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus cv GSK3-1
FD561910       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus var. oleiformis
FD973662       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. maritimus
FD938658       --> CAACGATCAGCAGCTCCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus sativus var. oleiformis
EY905249       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAG-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> CAACGATCAGCAGCTGCGAGCAACGGTGAGCCTTCCTAAA-GGAACAGGA  Raphanus raphanistrum subsp. landra
FD557991       --> ...............................................GGA  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17209        --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus cv GSK3-1
FY437624       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus cv GSK3-1
FY433961       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus cv GSK3-1
EV545306       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAAC  Raphanus raphanistrum subsp. landra
FD969312       <-- CAAACTGTTAAAGTGGCTGT-CTTGCACAAGGTGAGAAGGTGGGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus raphanistrum subsp. maritimus
EY912416       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ...................................GAAGGTGGATGAAGC  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ..................................................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> CAAACTGTTAAAGTGGCTGTTCTTG.........................  Raphanus sativus var. oleiformis
FD947431       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAATGTGA...............  Raphanus sativus cv Early Scarlet Globe
EW717009       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus sativus var. oleiformis
EX755592       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. maritimus
EV549929       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus cv GSK3-1
FD551730       --> CAAACTGTTAGAGTGTCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus cv GSK3-1
FD561910       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus sativus var. oleiformis
FD973662       --> CAAACTGTTAAAGTGGCTGT-CTTGCACAAGGTGAGAAGGTGGGTGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTCGATGAAGC  Raphanus raphanistrum subsp. maritimus
FD938658       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGTTGAGAAGGTCGATGAAGC  Raphanus sativus var. oleiformis
EY905249       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGTTGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAAC  Raphanus raphanistrum subsp. landra
FD557991       --> CAAACTGTTAAAGTGGCTGTTCTTGCACAAGGTGAGAAGGTGGATGAAGC  Raphanus raphanistrum subsp. landra
EY940724       --> .................................ggtAAGGTCGATGAAGC  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN17209        --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus cv GSK3-1
FY437624       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus cv GSK3-1
FY433961       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus cv GSK3-1
EV545306       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTTATCGAACAGA  Raphanus raphanistrum subsp. landra
FD969312       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATTGAACAGA  Raphanus raphanistrum subsp. maritimus
EY912416       <-- AAAAAATGCAGGGGCGGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. maritimus
FD531549       <-- AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ....................TTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus var. oleiformis
FD944389       <-- .........................GGCAGTGATGATTTGATTGAACAGA  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ..................................................  Raphanus sativus cv GSK3-1
FD547570       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> A.................................................  Raphanus sativus var. oleiformis
EX755592       --> AAAAA-TGCAGGG-CAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> AAAAAATGCAGGG-CAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. maritimus
EV549929       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus cv GSK3-1
FD551730       --> AAAAA.............................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus sativus cv GSK3-1
FD561910       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATTGAACAGA  Raphanus sativus var. oleiformis
FD973662       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> AAAAAA............................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATTGAACAGA  Raphanus sativus var. oleiformis
EY905249       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTTATCGAACAGA  Raphanus raphanistrum subsp. landra
FD557991       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATCGAACAGA  Raphanus raphanistrum subsp. landra
EY940724       --> AAAAAATGCAGGGGCAGATATTGTGGGCAGTGATGATTTGATTGAACAGA  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN17209        --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FY434760       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FY437624       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FY433961       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EV545306       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCTGATATG
EV573338       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD969312       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD958678       <-- TAAAGGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EY912416       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCTGATATG
EX750842       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD531549       <-- TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EX892869       <-- TAAAAGGAGGGTTCATGGAGTTCGATAATTTAATTGCATCCCCGGATATG
FD944389       <-- TAAAAGGAGGGTTCGTGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FY437040       <-- ..........................................CGGATATG
FD547570       <-- ..................................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> TAAAAGGAGG-TTCATGGAGTTCGATAAGCTAATTGCATCCCCGGATATG
EY916805       --> ..................................................
EX746438       --> TAAAAG-A-GGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EV549929       --> TA................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCC.......
FD551730       --> ..................................................
FY437864       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD561910       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD973662       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EY905249       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EV535068       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EV568670       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
FD557991       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATA
EY940724       --> TAAAAGGAGGGTTCATGGAGTTCGATAAGTTAATTGCATCCCCGGATATG
EV549285       --> ..................................................
EY916712       --> ..................................................

               751    -    801
UN17209        --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FY434760       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FY437624       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FY433961       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV545306       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV573338       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD969312       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD958678       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EY912416       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EX750842       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD531549       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EX892869       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD944389       <-- ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FY437040       <-- ATGGTCAAGGTTGCTG-CCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD547570       <-- .................CCTTGAAAAGATTCTTGGTCCTCGAGGACTCAT
EV539832       <-- ..................................GTCCTCGAGGACTCAT
EY912350       <-- ..................................................
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ATGGTCAAG-TTGCTGGC................................
EY916805       --> ..................................................
EX746438       --> ATGGTCAAG-TTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD561910       --> ATGGT.............................................
FD973662       --> ATGGTCAAAGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EY905249       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV535068       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV568670       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
FD557991       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EY940724       --> ATGGTCAAGGTTGCTGGCCTTGGAAAGATTCTTGGTCCTCGAGGACTCAT
EV549285       --> ..................................................
EY916712       --> ..................................................

               801    -    851
UN17209        --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- GTCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FY434760       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FY437624       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FY433961       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV545306       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV573338       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD969312       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD958678       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EY912416       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EX750842       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD531549       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EX892869       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD944389       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FY437040       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD547570       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV539832       <-- GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EY912350       <-- ..................................................
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> GCCAAATCCCAA......................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD561910       --> ..................................................
FD973662       --> GCCAAATCCCAAG-CTGGTACCGTCACAGCTAACATTCCACAG-CTATAG
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTC............
EY905249       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV535068       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV568670       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
FD557991       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EY940724       --> GCCAAATCCCAAGGCTGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EV549285       --> .............ctgGGTACCGTCACAGCTAACATTCCACAGGCTATAG
EY916712       --> ..................................................

               851    -    901
UN17209        --> AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv GSK3-1
FY437624       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv GSK3-1
FY433961       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv GSK3-1
EV545306       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. landra
FD969312       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. maritimus
EY912416       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- AGGAGTTCAAGAAGGGCAAAGTA-AATTCAGAGCAGACAGAACTGGGATT  Raphanus raphanistrum subsp. maritimus
FD531549       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. maritimus
EX892869       <-- AGGAGTTCAAGAAGGGGAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus var. oleiformis
FD944389       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv GSK3-1
FD547570       <-- AGGAGTTCAAGAAGGGAAAGGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ............gGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> ..................................................  Raphanus sativus var. oleiformis
EX755592       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> ..................................................  Raphanus sativus cv GSK3-1
FD551730       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> AGagtt............................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. landra
FD557991       --> AGGAGTTCAAGAAGGGCAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. landra
EY940724       --> AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus sativus cv Early Scarlet Globe
EV549285       --> AGGAGTTCAAGAAGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ............gGGGAAAAGTAGAATTCAGAGCAGACAAAACTGGGATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN17209        --> GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus sativus cv GSK3-1
FY437624       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus sativus cv GSK3-1
FY433961       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus sativus cv GSK3-1
EV545306       <-- GTTCA-ATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- GTTCACATTCCCTTTGGGAAAGTAAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. landra
FD969312       <-- GTTCACATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. maritimus
EY912416       <-- GTTCACATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- GTTCACATTCCCTTTGGGAAAGTAAATTTCATAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. maritimus
FD531549       <-- GTTCACATTCCCTTTGGGAAAGTAAATTTCACAGAGGAAGACCTGCTTGT  Raphanus raphanistrum subsp. maritimus
EX892869       <-- GTTCACATTCCCTTTGGGAAAGTAAATTTCACAGAGGAAGACCTGCTCGT  Raphanus sativus var. oleiformis
FD944389       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGTTCGT  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus sativus cv GSK3-1
FD547570       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGTTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- GTTCACATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> ..................................................  Raphanus sativus var. oleiformis
EX755592       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> ..................................................  Raphanus sativus cv GSK3-1
FD551730       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> GTTCACATTCCC......................................  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> GTTCACATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> GTTCACATTCCCTTCGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> GTTCACATTCCCTTTGGGAAAGTAAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. landra
FD557991       --> GTTCACATTCCCTTTGGGAAAGTAAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. landra
EY940724       --> GTTCACATTCCCTTTGG.................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> GTTCACATTCCCTTTGGGAAAGTTAATTTCACAGAGGAAGACCTGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN17209        --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FY434760       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FY437624       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FY433961       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EV545306       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EV573338       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD969312       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD958678       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EY912416       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EX750842       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD531549       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EX892869       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD944389       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FY437040       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD547570       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGCCAAACAAGCCAAA-GGGA
EV539832       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EY912350       <-- AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> ..................................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ..................................................
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAA...........
EV535068       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EV568670       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
FD557991       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA
EY940724       --> ..................................................
EV549285       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAAAGGGA
EY916712       --> AAACTTCCTAGCAGCAGTGAAATCGGTGGAGACAAACAAGCCAAA-GGGA

               1001   -   1051
UN17209        --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FY434760       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FY437624       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FY433961       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EV545306       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EV573338       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD969312       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD958678       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EY912416       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EX750842       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD531549       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACACATGCTCGTCAATGGGGCC
EX892869       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD944389       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FY437040       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD547570       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EV539832       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EY912350       <-- GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGTGCC
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> ..................................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ..................................................
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EV568670       --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
FD557991       --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EY940724       --> ..................................................
EV549285       --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGGGCC
EY916712       --> GCAAAAGGAGTGTACTGGAAAAGCGCACACATATGCTCGTCAATGGTGCC

               1051   -   1101
UN17209        --> ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATT
FY434760       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FY437624       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FY433961       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EV545306       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EV573338       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD969312       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD958678       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EY912416       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EX750842       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD531549       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EX892869       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD944389       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FY437040       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD547570       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EV539832       <-- ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EY912350       <-- ATCCATCAAGTTGAACATAA-GGGAGATTATAGACTTCAAGCCATAAATA
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> ..................................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ..................................................
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> ATCCATCAAGTTGAACATAAAGGGAGATGATAGACTTCAAGCCATAAATA
EV568670       --> ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
FD557991       --> ATCCATCAAGTTGAACATAA-GGGAGATGATAGACTTCAAGCCATAAATA
EY940724       --> ..................................................
EV549285       --> ATCCATCAAGTTGAACATAAAGGGAGATGATAGACTTCAAGCCATAAATT
EY916712       --> ATCCATCAAGTTGAACATAA-GGGAGATTATAGACTTCAAGCCATAAATA

               1101   -   1151
UN17209        --> AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus sativus cv GSK3-1
FY437624       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus sativus cv GSK3-1
FY433961       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus sativus cv GSK3-1
EV545306       <-- AATAAA----CCCACATTTGAGTGAATGAGGAGAAGGA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA-GGAAG-GT-GT  Raphanus raphanistrum subsp. landra
FD969312       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. maritimus
EY912416       <-- AATAAA----CCCACATTTGAGTGAATGAGGAGAAGGA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA-GGAAG-GT-GT  Raphanus raphanistrum subsp. maritimus
FD531549       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA-GGAAG-GT-GT  Raphanus raphanistrum subsp. maritimus
EX892869       <-- AATAAATAAACCCACATTTGAGTGAATGAGGAG---GA-GGAAG-GT-GT  Raphanus sativus var. oleiformis
FD944389       <-- AATAAA----CCCACATTTGAGTGAATTAGGAG---GA----AG-GT-GT  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus sativus cv GSK3-1
FD547570       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> ..................................................  Raphanus sativus var. oleiformis
EX755592       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> ..................................................  Raphanus sativus cv GSK3-1
FD551730       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> ..................................................  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> AATAAA----CCCACATTTGAGTGAA........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> AATAAA----CCCACATTTGAGTGAATGAGGAG---GAGGAAAGTGTAGT  Raphanus raphanistrum subsp. landra
FD557991       --> AATAAA----CCCACATTTGAGTGAATGAGGAG---GA-GGAAG-GT-GT  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> AATAAA----CCCACATTTGAGTGA-TGAGGAG---GA----AC-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> AATAAA----CCCACATTTGAGTGAATGAGGAG---GA----AG-GT-GT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1151   -   1201
UN17209        --> A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- A---TTTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FY434760       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FY437624       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FY433961       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EV545306       <-- AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EV573338       <-- AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD969312       <-- A---TGTTTTTGAGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD958678       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTAAGTTAGTT
EY912416       <-- AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EX750842       <-- AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD531549       <-- AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EX892869       <-- A---TGTTTTTGAGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD944389       <-- A---TGTTTTTGAGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FY437040       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD547570       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EV539832       <-- A---TGTTTTTGAGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EY912350       <-- A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> ..................................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ..................................................
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> ..................................................
EV568670       --> A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
FD557991       --> AGTATGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT
EY940724       --> ..................................................
EV549285       --> A---TTTTTTTGGGAGTGTAG-CG-ACACCAA-GATGTAGTATGT-AGTT
EY916712       --> A---TGTTTTTGGGAGTGTAGGCGAACACCAAAGATGTAGTATGTTAGTT

               1201   -   1251
UN17209        --> -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus sativus cv GSK3-1
FY437624       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus sativus cv GSK3-1
FY433961       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus sativus cv GSK3-1
EV545306       <-- TATCTCTTCTTTGTATAACCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- -ATCTCTTCTTTGTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. landra
FD969312       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus raphanistrum subsp. maritimus
EY912416       <-- TATCTCTTCTTTGTATAACCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- -ATCTCTTCTTTGTATA-CCTCCTCACTGGTTGTATCACCTTTAACTTTG  Raphanus raphanistrum subsp. maritimus
FD531549       <-- -ATCTCTTCTTTGTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. maritimus
EX892869       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus sativus var. oleiformis
FD944389       <-- -ATTTCTT----GTATA-CCTTTTCACTGGTTGTATCCCCTTa.......  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus sativus cv GSK3-1
FD547570       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTTTAACTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- -ATTTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> ..................................................  Raphanus sativus var. oleiformis
EX755592       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> ..................................................  Raphanus sativus cv GSK3-1
FD551730       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> ..................................................  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> -ATCTCTTCTTTGTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. landra
FD557991       --> -ATCTCTTCTTTGTATA-CCTCCTCACTGGTTGTATCACCTTTAACTCTG  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> -ATCTCTT----Ggt...................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> -ATCTCTT----GTATA-CCTCCTCACTGGTTGTATCACCTT-AACTCTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               1251   -   1301
UN17209        --> ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAAATTTGCATTGTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAA-TTTGCgagatctt  Raphanus raphanistrum subsp. raphanistrum (NY)
FY434760       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGT..................  Raphanus sativus cv GSK3-1
FY437624       <-- ATAG-CCATTTGC.....................................  Raphanus sativus cv GSK3-1
FY433961       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAA-TTTGCgagatctt  Raphanus sativus cv GSK3-1
EV545306       <-- ATAGACCATTTGCTGTATTGGATTATTACTGTT.................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573338       <-- ATAG-CTATTTGATGTATTG-ATTATTACTGTTAAAATTTGCATTGTGAG  Raphanus raphanistrum subsp. landra
FD969312       <-- ATAG-CTATTTGATGTATTG-ATTATTACT....................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD958678       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGTc.................  Raphanus raphanistrum subsp. maritimus
EY912416       <-- ATAGACCATTTGCTGTATTGGATTATTACTGTTAAAATTTG.........  Raphanus raphanistrum subsp. raphanistrum (NY)
EX750842       <-- ATAG-CTATTTGATGTATTG-ATTATTACTGTTAAAATTTGCATTGTGGG  Raphanus raphanistrum subsp. maritimus
FD531549       <-- ATAG-CTATTTGATGTATTG-ATTATTACTGTTAAAATTTGC........  Raphanus raphanistrum subsp. maritimus
EX892869       <-- ATAG-CTATTTGATGTATTG-ATTATTACTGTT.................  Raphanus sativus var. oleiformis
FD944389       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FY437040       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGT..................  Raphanus sativus cv GSK3-1
FD547570       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAA-TTTGCgagatctt  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539832       <-- ATAG-CTATTTGATGTATTG-ATTATTACTGTTAAg..............  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912350       <-- ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAAtt............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD940437       --> ..................................................  Raphanus sativus var. oleiformis
FD947431       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EW717009       --> ..................................................  Raphanus sativus var. oleiformis
EX755592       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916805       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX746438       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV549929       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY914762       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY428912       --> ..................................................  Raphanus sativus cv GSK3-1
FY447356       --> ..................................................  Raphanus sativus cv GSK3-1
FD551730       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY437864       --> ..................................................  Raphanus sativus cv GSK3-1
FD561910       --> ..................................................  Raphanus sativus var. oleiformis
FD973662       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY435604       --> ..................................................  Raphanus sativus cv GSK3-1
FD962048       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD938658       --> ..................................................  Raphanus sativus var. oleiformis
EY905249       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV535068       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV568670       --> ATAG-CTATTTGATGTATTG-ATTATTACTGTTAAAATTTGCATTGTGAG  Raphanus raphanistrum subsp. landra
FD557991       --> ATAG-Ctat.........................................  Raphanus raphanistrum subsp. landra
EY940724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EV549285       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY916712       --> ATAG-CCATTTGCTGTATTG-ATTATTACTGTTAAAtt............  Raphanus raphanistrum subsp. raphanistrum (NY)

               1301   -   1351
UN17209        --> ATCTGTATTATTGCCTTTGGAGAGAACAAATGAGTCGTTTTAATAAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV544792       <-- tattgccttcc.......................................
FY434760       <-- ..................................................
FY437624       <-- ..................................................
FY433961       <-- tatg..............................................
EV545306       <-- ..................................................
EV573338       <-- ATCTGTATTATTGCCTTTGGAGAGAACAAATGAGTCGTTTTAATAAATAA
FD969312       <-- ..................................................
FD958678       <-- ..................................................
EY912416       <-- ..................................................
EX750842       <-- ATCTGTATTATTGCCTTCGGAGAGAACAAATGAGTCGTTTTAATAAATAA
FD531549       <-- ..................................................
EX892869       <-- ..................................................
FD944389       <-- ..................................................
FY437040       <-- ..................................................
FD547570       <-- tattgccttcc.......................................
EV539832       <-- ..................................................
EY912350       <-- ..................................................
FD940437       --> ..................................................
FD947431       --> ..................................................
EW717009       --> ..................................................
EX755592       --> ..................................................
EY916805       --> ..................................................
EX746438       --> ..................................................
EV549929       --> ..................................................
EY914762       --> ..................................................
FY428912       --> ..................................................
FY447356       --> ..................................................
FD551730       --> ..................................................
FY437864       --> ..................................................
FD561910       --> ..................................................
FD973662       --> ..................................................
FY435604       --> ..................................................
FD962048       --> ..................................................
FD938658       --> ..................................................
EY905249       --> ..................................................
EV535068       --> ..................................................
EV568670       --> ATCTGTATTATTGCCTTTGGAGAGA-CAAATGAGTCGTTTTAATAAATAA
FD557991       --> ..................................................
EY940724       --> ..................................................
EV549285       --> ..................................................
EY916712       --> ..................................................

               1351   -   1401
UN17209        --> TAATATTTCGCTAAATTG
                   ~~~~~~~~~~~~~~~~~~
EV544792       <-- ..................
FY434760       <-- ..................
FY437624       <-- ..................
FY433961       <-- ..................
EV545306       <-- ..................
EV573338       <-- TAATATTTCGC.......
FD969312       <-- ..................
FD958678       <-- ..................
EY912416       <-- ..................
EX750842       <-- TAATATTTCGTTAAATTG
FD531549       <-- ..................
EX892869       <-- ..................
FD944389       <-- ..................
FY437040       <-- ..................
FD547570       <-- ..................
EV539832       <-- ..................
EY912350       <-- ..................
FD940437       --> ..................
FD947431       --> ..................
EW717009       --> ..................
EX755592       --> ..................
EY916805       --> ..................
EX746438       --> ..................
EV549929       --> ..................
EY914762       --> ..................
FY428912       --> ..................
FY447356       --> ..................
FD551730       --> ..................
FY437864       --> ..................
FD561910       --> ..................
FD973662       --> ..................
FY435604       --> ..................
FD962048       --> ..................
FD938658       --> ..................
EY905249       --> ..................
EV535068       --> ..................
EV568670       --> TAATATTTCGC.......
FD557991       --> ..................
EY940724       --> ..................
EV549285       --> ..................
EY916712       --> ..................