Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17211

               1      -     51
UN17211        --> GGTCTCCTCTCTCGCCTAACACTTACCACACACTTTTCACGCCTTCATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- GGTCTCCTCTCTCGCCTAACACTTACCACACACTTTTCACGCCTTCATCA
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> GGTCTCCTCTCTCGCCTAACACTTACCACACACTTTTCACGCCTTCATCA
FD536473       --> GGTCTCCTCTCTCGCCTAACACTTACCACACACTTTTCACGCCTTCATCA
FD989695       --> GGTCTCCTCTCTCGCCTAACACTTACCACACACTTTTCACGCCTTCATCA
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               51     -    101
UN17211        --> TCCTCCTTTCTCTTCCCAAACTTCTCTTTTCTTCTCAGTTAAATTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- TCCTCCTTTCTCTTCCCAAACTTCTCTTCTCTTCTCAGTTAAATTTTTTT
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> TCCTCCTTTCTCTTCCCAAACTTCTCTTTTCTTCTCAGTTAAATTTTTTT
FD536473       --> TCCTCCTTTCTCTTCCCAAACTTCTCTTTTCTTCTCAGTTAAATTTTTTT
FD989695       --> TCCTCCTTTCTCTTCCCAAACTTCTCTTCTCTTCTCAGTTAAATTTTTTT
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               101    -    151
UN17211        --> CAGTTCTCCTTTTAAATTAAATCTATGATCTAGCTCGTGTCACCATAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- CAGTTCTCCTTTTAAATTAAATCTATGATCTAGCTC-TGTCACCATAGCT
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> CAGTTCTCCTTTTAAATTAAATCTATGATCTAGCTCGTGTCACCATAGCT
FD536473       --> CAGTTCTCCTTTTAAATTAAATCTATGATCTAGCTCGTGTCACCATAGCT
FD989695       --> CAGTTCTCCTTTTAAATTAAATCTATGATCTAGCTC-TGTCACCATAGCT
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               151    -    201
UN17211        --> CTCTGGCAATAGAAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- CTCTGGCAATAGAAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> CTCTGGCAATAGAAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
FD536473       --> CTCTGGCAATAGAAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
FD989695       --> CTCTGGCAATAGAAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
EV568344       --> ............gAGCTGTACAGTTAAGCTTAAGGTAAAAACAAATTTTC
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               201    -    251
UN17211        --> ATTTATTTTTTCTGGATCGAAAAAAAAAAGAAAAGAAAACGATGAATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ATTTATTTTTTCTGGATCG...............................
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> ATTTATTTTTTCTGGATCGAAAAAAAAA-GAAAAGAAAACGATGAATCAC
FD536473       --> ATTTATTTTTTCTGGATCGAAAAAAAAAAGAAAAGAAAACGATGAATCAC
FD989695       --> ATTTATTTTTTCTGGATCG...............................
EV568344       --> ATTTATTTTTTCTGGATCGAAAAAAAAAAGAGAAGAAGACGATGAATCAC
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               251    -    301
UN17211        --> TGGGCGGTTCAACCAAACGCTTTCGCTGCGGGTGGAGATCTGAGGAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> TGGGCGGTTCAACCAAACGCTTTCGCTGCGGGTGGAGATCTGAGGAACTC
FD536473       --> TGGGCGGTTCAACCAAACGCTTTCGCTGCGGGTGGAGATCTGAGGAACTC
FD989695       --> ..................................................
EV568344       --> TGGGCGGTTCAACCAAACGCTTTCGCTGCGGGTGGAGATCTGAGGAACTC
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> ..................................................

               301    -    351
UN17211        --> CGTGTCAGTGGTGGAAAGAGACCAGGCTGTTGTCGTTTGTCCAAAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- ..................................................
EV573095       <-- ..................................................
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> CGTGTCAGTGGTGGAAAGAGACCAGGCTGTTGTCGTTTGTCCAAAACCAC
FD536473       --> CGTGTCAGTGGTGGAAAGAGACCAGGCTGTTGTCGTTTGTCCAAAACCAC
FD989695       --> ..................................................
EV568344       --> CGTGTCAGTGGTGGAAAGAGACCAGGCTGTTGTCGTTTGTCCAAAACCAC
FD570675       --> ...........gGGAAAGAGACCAGGCTGTTGTCGTTTGTCCAAAACCAC
EV566466       --> ..................................................
EX763257       --> ..................................................

               351    -    401
UN17211        --> GTCGTATTGGTCTCCGTAACCCTCTCCACCATCCTTCTCGATCTCTGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- .TCGTATTTGTCTTCGTAACCCTCTCCACTGTCCTTCTCGATCTCTGCGA
EV573095       <-- ...........................................TCTGCGA
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> GTCGTATTGGTCTCCGTAACCCTCTCCACCATCCTTCTCGATCTCTGCGA
FD536473       --> GTCGTATTGGTCTCCGCAACCCTCTCCACCATCCTTCTCGATCTCTGCGA
FD989695       --> ..................................................
EV568344       --> GTCTTATTGGTCTCCGTAACCCTCTCCACCATCCTTCTCGATCTCTGCGA
FD570675       --> GTCGTATCGGTCTCCGTAACCCTCTCCACCATCCTTCTCGATCTCTGCGA
EV566466       --> .....................................TCGAACTCTGCGA
EX763257       --> ..................................................

               401    -    451
UN17211        --> TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGATATCTTAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- TGTTACAACCACCAAGTT-GAATCGAAGG-CAGAGGCTGATATCTTAGAT
EV573095       <-- TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGATATCTTAGAT
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGACATCTTAGAT
FD536473       --> TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGATATCTTAGAT
FD989695       --> ..................................................
EV568344       --> TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGATATCTTAGAT
FD570675       --> TGTTACAACCACCAAGTT-GAATCCAAGG-CAGAGGCTGATATCTTAGAT
EV566466       --> TGTTACAACCACCAAGTTTGAATCCAAGGGCAGAGGCTGATATCTTAGAT
EX763257       --> ..................................................

               451    -    501
UN17211        --> ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
EV573095       <-- ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
FD531935       <-- ..................................................
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
FD536473       --> ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
FD989695       --> ..................................................
EV568344       --> ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
FD570675       --> ATCATTC-TGACAAAGGATGGTTATGGTACGGAACAAGTTCCCCAAACGC
EV566466       --> ATCATTCCTGACAAAGGATGGTTATGGTACGGAACAAGTTCACCAAACGC
EX763257       --> ..................................................

               501    -    551
UN17211        --> AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- AGGTATTAGACCCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
EV573095       <-- AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
FD531935       <-- ........................TTTTTATGTGGGTCGCCGCCGAGCAG
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
FD536473       --> AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
FD989695       --> ..................................................
EV568344       --> AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
FD570675       --> AGGTATTAGACTCGCCGTCCCC-GTTTTTATGTGGGTCGCCGCCGAGCAG
EV566466       --> AGGTATTAGACTCGCCGTCCCCCGTTTTTATGTGGGTCGCCGCCGAGCAG
EX763257       --> ..................................................

               551    -    601
UN17211        --> AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
EV573095       <-- AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
FD531935       <-- AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
EV541034       <-- ..................................................
EX767367       <-- ..................................................
EX772146       --> AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
FD536473       --> AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
FD989695       --> ..................................................
EV568344       --> AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
FD570675       --> AGTCGCTAACCCTTTGACACAGGATGCTCGATTCAGAGATGAAATCTTTT
EV566466       --> AGTCGCTAACCCTTTAACACAGGATGCTCGATTCAGAGATGAAATCTTTT
EX763257       --> ..................................................

               601    -    651
UN17211        --> CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- CTTCGCCGATCCCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
EV573095       <-- CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
FD531935       <-- CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
EV541034       <-- .................................................T
EX767367       <-- ..................................................
EX772146       --> CTTCGCCGATCCCGACTCCGCTGGGCCAACCTCCCTCGTCTC-TTCTTCT
FD536473       --> CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
FD989695       --> ..................................................
EV568344       --> CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
FD570675       --> CTTCGCCGATCCCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
EV566466       --> CTTCGCCGATACCGACTCCGCTGGGCCAACCTCCCTCGTCTCCTTCTTCT
EX763257       --> ..................................................

               651    -    701
UN17211        --> TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTAACAG
EV573095       <-- TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCTATTTTGGTAACAG
FD531935       <-- TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTAACAG
EV541034       <-- TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTAACAG
EX767367       <-- ..................................................
EX772146       --> TCATCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTA-CAG
FD536473       --> TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTA-CAG
FD989695       --> ..................................................
EV568344       --> TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCTATTTTGGTAACAG
FD570675       --> TCTTCCTCTGGGAGGAAAGGAGGATGTGTTAGAGGCAATTTTGGTAACAG
EV566466       --> TCTTCCTCTGGGAGG...................................
EX763257       --> ..................................................

               701    -    751
UN17211        --> CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACATTAGAA
EV573095       <-- CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
FD531935       <-- CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
EV541034       <-- CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
EX767367       <-- ..................................................
EX772146       --> CCCAGCGG..........................................
FD536473       --> CCCAGCGGTTAGGATCGAAGG-TTTGATTGCCTCGATAGGGACAGTAGAA
FD989695       --> ..................................................
EV568344       --> CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
FD570675       --> CCCAGCGGTTAGGATCGAAGGGTTTGATTGCCTCGATAGGGACAGTAGAA
EV566466       --> ..................................................
EX763257       --> ..................................................

               751    -    801
UN17211        --> ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAACCTCAAAGAACTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV542813       <-- ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAACCTCAAAGAACTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV573095       <-- ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAACCTCAAAGAACTAA  Raphanus raphanistrum subsp. landra
FD531935       <-- ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAAACTCAATGAACTAA  Raphanus raphanistrum subsp. maritimus
EV541034       <-- ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAAACTCAATGAACTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767367       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772146       --> ..................................................  Raphanus raphanistrum subsp. landra
FD536473       --> ACTGCAGCATCCCTACCTTGGCT-AGAA--CACAAAACTCAT-GA-CTAA  Raphanus raphanistrum subsp. maritimus
FD989695       --> ..................................................  Raphanus raphanistrum subsp. landra
EV568344       --> ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAACCTCAAAGAACTAA  Raphanus raphanistrum subsp. landra
FD570675       --> ACTGCAGCATCCCTACCTTGGCTTAGAAACCACAAACCTCAAAGAACTAA  Raphanus sativus cv Early Scarlet Globe
EV566466       --> ..................................................  Raphanus raphanistrum subsp. landra
EX763257       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN17211        --> CCACACATACTCCGTTGAATTTA-AACTTCACAAAAACCAGTTAGTGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- CCACACATACTCCGTTGAATTTA-AACTTCACAAAAACCAGTTAGTGCGT
EV573095       <-- CCACACATACTCCGTTGAATTTATAACTTCACAAACACCAGTTAGTGCGT
FD531935       <-- CCACACATACTCCGTTGAATTTA-A-TTTCATAAAAACCAGTTAGTGCGT
EV541034       <-- CCACACATACTCCGTTGAATTTA-A-TTTCATAAAAACCAGTTAGTGCGT
EX767367       <-- ..................................................
EX772146       --> ..................................................
FD536473       --> C-ACACATACTC-GTTGAtttatttcat......................
FD989695       --> ..................................................
EV568344       --> CCACACATACTCCGTTGAATTTATAACTTCACAAACACCAGTTAGTGCGT
FD570675       --> CCACACATACTCCGTTGAATTTA-AACTTCACAAAAACCAGTTAGTGCGT
EV566466       --> ..................................................
EX763257       --> ..................................................

               851    -    901
UN17211        --> CGTACATAAA-TGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- CGTACATAAA-TGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
EV573095       <-- CGTACATAAA-TGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
FD531935       <-- CGTACATAAAATGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
EV541034       <-- CGTACATAAAATGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
EX767367       <-- .....................gGATATGGAGATGTGTGGAACGAGTCTTT
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> CGTACATAAA-TGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
FD570675       --> CGTACATAAA-TGTTGTTAAATGATATGGAGATGTGTGGAATGAGTCTTT
EV566466       --> ..................................................
EX763257       --> .....................gGATATGGAGATGTGTGGAACGAGTCTTT

               901    -    951
UN17211        --> -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- TGAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTT-
EV573095       <-- -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
FD531935       <-- -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
EV541034       <-- -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
EX767367       <-- -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTT.....
FD570675       --> TGAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT
EV566466       --> ..................................................
EX763257       --> -GAGTGAAGTTGAGAAAGTACAAGAGATCGATCATTTGGAGTTTTTTTTT

               951    -   1001
UN17211        --> -CTTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- -CTTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
EV573095       <-- -CTTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
FD531935       <-- -ATTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
EV541034       <-- --TTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
EX767367       <-- TCTTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> ..................................................
FD570675       --> -CT...............................................
EV566466       --> ..................................................
EX763257       --> TCTTCTAAGAGTGTAAATAGGTGACGAAGTACGCAGTTTTCTTGGGTTAA

               1001   -   1051
UN17211        --> GT------A-TGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- GT------A-TGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
EV573095       <-- GT------A-AGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
FD531935       <-- -----------GTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
EV541034       <-- GT------A-TGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
EX767367       <-- GTTACTTAAGTGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> GTTACTTAAGTGTAGTATTTGTCGTCATTTTGTAAAGTATTAATATTCGG

               1051   -   1101
UN17211        --> AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- AAAGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG
EV573095       <-- AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG
FD531935       <-- AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAAAAGAGG
EV541034       <-- AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG
EX767367       <-- AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> AAGGTCAGGTTCTCTTCTATGGTTATGTAAAGAGATGGAGATAGAAGAGG

               1101   -   1151
UN17211        --> AGGGTATTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- AGGGTATTTTGGGTATTTTTCGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
EV573095       <-- AGGG--TTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
FD531935       <-- AGGGTATTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
EV541034       <-- AGGGTATTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
EX767367       <-- AGGGTATTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> AGGGTATTTTGGGTATTTT-CGTTTGTAGTTTTCTTTTCTGTTGGAGTGT

               1151   -   1201
UN17211        --> CGGTTACGAAGATGAGGAAACAAATTTGTACAAAAAGAAAGAATTGAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- ..................................................
EV542813       <-- CGGTTACGAAGATGAGGAAACAAATTTGTACAAGAAGAAAGAATTGAAAT
EV573095       <-- CGGTTATGAAGATGAGGAAACAAATTTGTAC...................
FD531935       <-- CGGTTATGAAGATGAGGAAACAAATTTGTACAAAA-GAAAGAATTCAAAT
EV541034       <-- CGGTTACGAAGATGAGGAAACAAATTTGTACAAAAAGAAAGAATTGAAAT
EX767367       <-- CGGTTACGAAGATGAGGAAACAAATTTGTACAAAAAGAAAGAATTGAAAT
EX772146       --> ..................................................
FD536473       --> ..................................................
FD989695       --> ..................................................
EV568344       --> ..................................................
FD570675       --> ..................................................
EV566466       --> ..................................................
EX763257       --> CGGTTACGAAGATGAGGAAACAAATTTGTACAAAAAGAAAGAATTGAAAT

               1201   -   1251
UN17211        --> GATATAAAATATTTTACTTTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
FD985449       <-- .........................
EV542813       <-- GATATAAAATATTTTACTTTGG...
EV573095       <-- .........................
FD531935       <-- GATATAAAATATTTTACTTTGG...
EV541034       <-- GATATAAAATATTTTACTTTGGAAG
EX767367       <-- GA.......................
EX772146       --> .........................
FD536473       --> .........................
FD989695       --> .........................
EV568344       --> .........................
FD570675       --> .........................
EV566466       --> .........................
EX763257       --> GATATAAAATATTTTACTTTGG...