1      -     51
UN17226        --> GGAAGAAGAGACAACAAGCACCACATGTTCAGATTCTTTTCTTAAACTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..................................................
EX759253       <-- ..................................................
FD947262       --> GGAAGAAGAGACAACAAGCACCACATGTTCAGATTCTTTTCTTAAACTGA
FD971825       --> ..................................................
FD961923       --> ..................................................
EY897464       --> ..................................................
EV548603       --> ..................................................
EW735279       --> ..................................................
EX763379       --> ..................................................
FD543866       --> ..................................................
FD557891       --> ..................................................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> ..................................................

               51     -    101
UN17226        --> GAATAAAAGAAACCGCAATACTCATCTCTCTCTCTCTCTCTTTGTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..................................................
EX759253       <-- ..................................................
FD947262       --> GAATAAAAGAAACCGCAATACTCATCTCTCTCTCTCTCTCTTTGTCTCTT
FD971825       --> .........................................ggGTCTCTT
FD961923       --> ..................................................
EY897464       --> ..................................................
EV548603       --> ..................................................
EW735279       --> ..................................................
EX763379       --> ..................................................
FD543866       --> ..................................................
FD557891       --> ..................................................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> ..................................................

               101    -    151
UN17226        --> TCTGTCTTTCCATCATCCTGCATTTAAATTCTCTCATTTTCCAGCAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..................................................
EX759253       <-- ..................................................
FD947262       --> TCTGTCTTTCCATCATCCTGCATTTAAATTCTCTCATTTTCCAGCAAAAA
FD971825       --> TCTGTCTTTCCATCATCCTGCATTTAAATTCTCTCATTTTCCAGCCAAAA
FD961923       --> .........................ggATTCTCTCATTTTCCTGCAAAAA
EY897464       --> ..................................gATTTTCCAGCAAAAA
EV548603       --> ..................................................
EW735279       --> ..................................................
EX763379       --> ..................................................
FD543866       --> ..................................................
FD557891       --> ..................................................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> ..................................................

               151    -    201
UN17226        --> AAATATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..................................................
EX759253       <-- ..................................................
FD947262       --> AAATATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
FD971825       --> AAATATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
FD961923       --> AA-TATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
EY897464       --> AAATATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
EV548603       --> .gggATCTCAGAAGAGGATGGCTTCACTTACTTCTATTGCCACCACCCCT
EW735279       --> ..ggATCTCAGAAGAGGATGGCTTCACTTACTTCTATTGCCACCACCCCT
EX763379       --> ..ggATCTCAGAAGAGGATGGCTTCACTTACTTCTATTGCCACCACCCCT
FD543866       --> ..ggATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
FD557891       --> ..ggATCTCAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
EX755088       --> .......ggAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
FD542611       --> ......gggAGAAGAAGATGGCTTCACTTACTTCTATTGCCACC---CCT
EY900022       --> .........................ACTTACTTCTATTGCCACC---CCT

               201    -    251
UN17226        --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..................................................
EX759253       <-- ..................................................
FD947262       --> TATCGCAGCTCAAGTTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
FD971825       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
FD961923       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
EY897464       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
EV548603       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
EW735279       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
EX763379       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
FD543866       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
FD557891       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGCCAAACT
EX755088       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
FD542611       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT
EY900022       --> TATCGCAGCTCAAGCTATCCATCTTCGTCGCAAGCTTTACGTGTCAAACT

               251    -    301
UN17226        --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ..........................................TTCTTCTT
EX759253       <-- ..................................................
FD947262       --> CGCCGGAAACACTCTGTTCTCAGCTGTAGTTAGATCCCCTGCTTCTTCTT
FD971825       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
FD961923       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EY897464       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EV548603       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EW735279       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EX763379       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
FD543866       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
FD557891       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EX755088       --> CACCGGAAACACTCTGTTCTCAGCTGTAGTTAGATCCCCTGCTTCTTCTT
FD542611       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT
EY900022       --> CACCGGAAACACTCTGTTCTCAGCTGGAGTTAGATCCCCTGCTTCTTCTT

               301    -    351
UN17226        --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- C-T--TCTTCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
EX759253       <-- .............GCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD947262       --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD971825       --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD961923       --> C-T--TCATCATCGCTTCTGACTATTCTAAGCGCTGCAACGAAACCTGAC
EY897464       --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
EV548603       --> C-T--TCATCATCGTTTCTGACTATTCGAAGCGCTGCAACAAAACCTGAC
EW735279       --> C-T--TCATCATCGTTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
EX763379       --> C-T--TCATCATCGTTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD543866       --> C-T--TCTTCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD557891       --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
EX755088       --> CATCATCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
FD542611       --> C-T--TCTTCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC
EY900022       --> C-T--TCATCATCGCTTCTGACTATTCGAAGCGCTGCAACGAAACCTGAC

               351    -    401
UN17226        --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCCTCTACTGGA
EX759253       <-- AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
FD947262       --> AAACCAGTAGTTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
FD971825       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
FD961923       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
EY897464       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
EV548603       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
EW735279       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
EX763379       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
FD543866       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCCTCTACTGGA
FD557891       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
EX755088       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA
FD542611       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGTGAGCTTCTACTGGA
EY900022       --> AAACCAGCAGCTGAAGTCGATTGGAGACAGAAGAGAGAGCTTCTACTGGA

               401    -    451
UN17226        --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EX759253       <-- GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
FD947262       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTACGGTTACAGAAAG
FD971825       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAAG
FD961923       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EY897464       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EV548603       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EW735279       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EX763379       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
FD543866       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
FD557891       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EX755088       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
FD542611       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG
EY900022       --> GAAAAGGGTGAGAAGTGTGGACGTGAAGGAAGCTCTGCGGTTACAGAAGG

               451    -    501
UN17226        --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759253       <-- AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947262       --> AGAACAACTTTGTGATTCTTGATGTTACACCAGAGGCTGAGTACAAGGAG  Raphanus sativus cv Early Scarlet Globe
FD971825       --> AGAACAACTTTGTGATTCTTGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961923       --> AGAACAACTTTGTGATTCTTGATGTTAGACCAGAGGCTGAATACAAGGAG  Raphanus raphanistrum subsp. maritimus
EY897464       --> AGAACAACTTTGTGATTCTTGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. maritimus
EV548603       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735279       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
EX763379       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543866       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557891       --> AGAACAACTTTGTGATTCTTGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. landra
EX755088       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACGAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542611       --> AGAACAACTTTGTGATTCTCGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900022       --> AGAACAACTTTGTGATTCTTGATGTTAGACCAGAGGCTGAGTACAAGGAG  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN17226        --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- GGTCATCCTCCGGGAGCTATCAATCTGGAGATGTACAGATTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759253       <-- GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947262       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGGCTGATACGAGA  Raphanus sativus cv Early Scarlet Globe
FD971825       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961923       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGGCTGATACGAGA  Raphanus raphanistrum subsp. maritimus
EY897464       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGGCTGATACGAGA  Raphanus raphanistrum subsp. maritimus
EV548603       --> GGGCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735279       --> GGGCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus sativus cv Rat-Tail Radish #3870
EX763379       --> GGGCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543866       --> GGTCATCCTCCGGGAGCTATCAATCTGGAGATGTACAGATTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557891       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGGCTGATACGAGA  Raphanus raphanistrum subsp. landra
EX755088       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGACTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542611       --> GGTCACCCTCCGGGAGCTATCAATCTGGAGATGTACAGATTGATAAGGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900022       --> GGTCATCCTCCGGGAGCTATCAATGTGGAGATGTACAGGCTGATACGAGA  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN17226        --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EX759253       <-- ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
FD947262       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCTTTCTTCGGTA
FD971825       --> ATGGACGCCATGGGACATAGCTCGCCGCCTTGGATTTGCATTCTTCGGTA
FD961923       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EY897464       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EV548603       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EW735279       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EX763379       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
FD543866       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
FD557891       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EX755088       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
FD542611       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA
EY900022       --> ATGGACGCCATGGGACATAGCTCGTCGTCTTGGATTTGCATTCTTCGGTA

               601    -    651
UN17226        --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- TCTTTTCTGGCACAGAAGAGAATCCAGAGTTTATCAAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759253       <-- TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947262       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCAAAAGTGTAGAAGCT  Raphanus sativus cv Early Scarlet Globe
FD971825       --> TCTTCTCTGGAACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961923       --> TCTTCTCCGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. maritimus
EY897464       --> TCTTCTCCGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. maritimus
EV548603       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735279       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus sativus cv Rat-Tail Radish #3870
EX763379       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543866       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCAAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557891       --> TCTTCTCCGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. landra
EX755088       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAGGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542611       --> TCTTCTCTGGCACAGAAGAGAATCCAGAGTTTATCAAAAGTGTAGAAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900022       --> TCTTCTCCGGCACAGAAGAGAATCCAGAGTTTATCCAAAGTGTAGAGGCT  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17226        --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EX759253       <-- AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
FD947262       --> AAACTTGACAAAGAG-CAAAGATA-TAGTAGCTTGTTCTTCCGCAGG-AC
FD971825       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
FD961923       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EY897464       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EV548603       --> AAACTTGACAAAGAGGTAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EW735279       --> AAACTTGACAAAGAGGTAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EX763379       --> AAACTTGACAAAGAGGTAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
FD543866       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
FD557891       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EX755088       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
FD542611       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC
EY900022       --> AAACTTGACAAAGAGGCAAAGATAATAGTAGCTTGTTCATCCGCAGGGAC

               701    -    751
UN17226        --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- TATGAAGCCGACTCAGAACCTCCCTGAAGGCCAACAATCTAGGTCTTTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759253       <-- TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947262       --> TATGA-GCCGACTC....................................  Raphanus sativus cv Early Scarlet Globe
FD971825       --> TATGAAGCCGACTCAGAATCTCCCT.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961923       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCCAGGTCTCTCA  Raphanus raphanistrum subsp. maritimus
EY897464       --> TATGAAGCCGACTCAGAATTTCCCTGAAGGCCAACAATCCAGGTCTCTCA  Raphanus raphanistrum subsp. maritimus
EV548603       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735279       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus sativus cv Rat-Tail Radish #3870
EX763379       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543866       --> TATGAAGCCGACTCAGAACCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557891       --> TATGAAGCCGACTCAGAATCTCCCTGAATGCCAACAATCCAGGTCTCTCA  Raphanus raphanistrum subsp. landra
EX755088       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542611       --> TATGAAGCCGACTCAGAACCTCCCTGAAGGCCAACAATCTAGGTCTCTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900022       --> TATGAAGCCGACTCAGAATCTCCCTGAAGGCCAACAATCCAGGTCTCTCA  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN17226        --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EX759253       <-- TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
FD947262       --> ..................................................
FD971825       --> ..................................................
FD961923       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EY897464       --> TGGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EV548603       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EW735279       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EX763379       --> TAGCTGCTTATGTTCTGGTCCTGAATGGCTATAAGAACGTATTTCACCTT
FD543866       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
FD557891       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EX755088       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGT..........
FD542611       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT
EY900022       --> TAGCTGCTTATGTTCTGGTCCTGAACGGCTATAAGAACGTATTTCACCTT

               801    -    851
UN17226        --> GAAGGAGGAATCTACACATGGAGCAAGGAAAGCCTTCCTATTGAATCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- GAAGGAGGAATCTACACATGGAGCAAGGAAGGCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX759253       <-- GAAGGAGGAATCTACACATGGAGCAAGGAAGGCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD947262       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD971825       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961923       --> GAATGTGGAATCTACACATGGAG...........................  Raphanus raphanistrum subsp. maritimus
EY897464       --> GAAGGTGGAATCTACACATGGAGCAAGGA--GCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. maritimus
EV548603       --> GAAGGAGGAATCTACACATGTAGCAAGGAAAGCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW735279       --> GAAGGAG-AATCTACACATGGAG...........................  Raphanus sativus cv Rat-Tail Radish #3870
EX763379       --> GAAG-A-GAATCTACACATGGAGCAAGGAA-GCC-TCCTATTGAATCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD543866       --> GAAAGAGGAATCTACACATGGAGCAAGGAA-GCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD557891       --> GAAGGTGGAATCTACACATGGAGCAAGGAAAGCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. landra
EX755088       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542611       --> G.................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY900022       --> GAAGGTGGAATCTACACATGGAGCAAGGAAAGCCTTCCTATTGAATCTGA  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN17226        --> AGAAGACTAACTTCTCCTCTCA-G-TCTTATAT--CCAGTTTTGTATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- AGAAGACTAACTTCTCCTCTCA-GGTCTTATATATCCAGTTTTGTATCTC
EX759253       <-- AGAAGACTAACTTCTCCTCTCA-GGTCTTATAT--CCAGTTTTGTATCTC
FD947262       --> ..................................................
FD971825       --> ..................................................
FD961923       --> ..................................................
EY897464       --> ..................................................
EV548603       --> AGAAGACTAACTTCTCCTCTCACG-TCTTATAT--CCAGTTTTGTATCTC
EW735279       --> ..................................................
EX763379       --> -G-AGACTAACTTCTCCTCTCA-G-TCTTATAT--CCAGTTT-GTATCTC
FD543866       --> AGAAGACTAACTTCTCCTCTCA-G-TCTTATATATCCAGTTTTGTATCTC
FD557891       --> AGAAGACTAACTTCTCCTCTCA-G-TCTTAT...................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> AGAAGACTAACTTCTCCTCTCA-G-TCTTATAT--CCAGTTTTGTATCTC

               901    -    951
UN17226        --> TGTCGAATTCA-G-TAGTGGCATTTAGA-GGTTTGGCTTTTCCAGAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- TGTCGAATTAAGG-TAGTGGCATTTAGAAGGTTTGGCTTTTCCAGAATGT
EX759253       <-- TGTCGAATTCA-GGTAGTGGCATTTAGA-GATTTGGCTTTTCCAGAATGT
FD947262       --> ..................................................
FD971825       --> ..................................................
FD961923       --> ..................................................
EY897464       --> ..................................................
EV548603       --> TGTCGAAT..........................................
EW735279       --> ..................................................
EX763379       --> TGTCGAATTCA-G-TAGTGGCATTTAGA-GGTTggct.............
FD543866       --> TGTCGAAT-AA-G-TAGTGGCATT..........................
FD557891       --> ..................................................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> TGTCGAATTCA-G-TAG.................................

               951    -   1001
UN17226        --> GTTTTTAA-GTTTGTAAAACTTCAGACATTTACCAATGAAAAGCAAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD539608       <-- GTTTTTAA-GTTTGTAAAACTTCAGACATTTACCAATGAAAAGCAAACCA
EX759253       <-- GTTTTTAAAGTTTGTAAAACTTCAGACATTTACCAATGAAAAGCAAACCA
FD947262       --> ..................................................
FD971825       --> ..................................................
FD961923       --> ..................................................
EY897464       --> ..................................................
EV548603       --> ..................................................
EW735279       --> ..................................................
EX763379       --> ..................................................
FD543866       --> ..................................................
FD557891       --> ..................................................
EX755088       --> ..................................................
FD542611       --> ..................................................
EY900022       --> ..................................................

               1001   -   1051
UN17226        --> GAATCCAGACAACTTTGATC
                   ~~~~~~~~~~~~~~~~~~~~
FD539608       <-- GAATCCAGACAACTTTGATC
EX759253       <-- GAATCCAGACAACTTTGAcc
FD947262       --> ....................
FD971825       --> ....................
FD961923       --> ....................
EY897464       --> ....................
EV548603       --> ....................
EW735279       --> ....................
EX763379       --> ....................
FD543866       --> ....................
FD557891       --> ....................
EX755088       --> ....................
FD542611       --> ....................
EY900022       --> ....................