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Alignment for radish unigene UN17241

               1      -     51
UN17241        --> GTAATAAAAATTTGTTCAGAATCCATTAATACATTGTTGTTTTGGTACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- ..AATAAAAATTTGTTCAAAATCCATTAATACATTGTTGTTTTGGTACAC
EV536554       <-- ...agtAAAATTTGTTCAGAATCCATTAATACATTGTTGTTTTGGTACAC
EW714890       <-- ..........TTTGTTCAACATCCATTAATACATTGTTGTTTTGGTACAC
EY929972       <-- ..............gTCAAAATCCATTAATACATTGT-G-TTTGGTACAC
FD542533       <-- ...........................................GGTACAC
FD938893       <-- ..................................................
EW717422       <-- ..................................................
FD955915       <-- ..................................................
EY950368       <-- ..................................................
FD953765       --> GTAATAAAAATTTGTTCAAAATCCATTAATACATTGTTGTTTTGGTACAC
EV540975       --> ...agtAAAATTTGTTCAGAATCCATTAATACATTGTTGTTTTGGTACAC
EY926281       --> ................caaAATCCATTAATACATTGTTGTTTTGGTACAC
EW721420       --> .............gctcaacATCCATTAATACATTGTTGTTTTGGTACAC
FD538580       --> ...........................................GGTACAC

               51     -    101
UN17241        --> TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
EV536554       <-- TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
EW714890       <-- TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTAAAA
EY929972       <-- TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
FD542533       <-- TGTTTCATTCAATATCTGT-CCATCAGAAA-CTACAAGACAATATTATAA
FD938893       <-- ..................................................
EW717422       <-- ..................................................
FD955915       <-- ..................................................
EY950368       <-- ..................................................
FD953765       --> TGTTTCGTTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
EV540975       --> TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
EY926281       --> TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA
EW721420       --> TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTAAAA
FD538580       --> TGTTTCATTCAATATCTGTTCCATCAGAAAACTACAAGACAATATTATAA

               101    -    151
UN17241        --> ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAAA  Raphanus sativus cv GSK3-1
EV536554       <-- ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAGTTACTT--A  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714890       <-- ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAAA  Raphanus sativus var. oleiformis
EY929972       <-- ATCAAAAACCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAA-  Raphanus sativus var. oleiformis
FD542533       <-- ATCAAAATCCATAAAATACAT-CTTTCGTGTAATATAAAAGTTACTT--A  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938893       <-- ................TACATTCTTTCGTGTAATATAAAAACAACTTAAA  Raphanus sativus var. oleiformis
EW717422       <-- ......................CTTTCGTGTA-TATAAAA-CAACT-AAA  Raphanus sativus var. oleiformis
FD955915       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY950368       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD953765       --> ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAAA  Raphanus sativus cv Rat-Tail Radish #3870
EV540975       --> ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAGTTACTTA--  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926281       --> ATCAAAAACCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAA-  Raphanus sativus var. oleiformis
EW721420       --> ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAACAACTTAAA  Raphanus sativus var. oleiformis
FD538580       --> ATCAAAATCCATAAAATACATTCTTTCGTGTAATATAAAAGTTACTTA--  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN17241        --> GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus cv GSK3-1
EV536554       <-- GGGTATGCACTCTAAGAAGCCTGGACACTGCTTTTGGATTTACCAGATGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714890       <-- GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
EY929972       <-- GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTCTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
FD542533       <-- GGGTATGCACTCTAAGAAGCCTGGACACTGCTTTTGGATTTACCAGATGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938893       <-- GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
EW717422       <-- GAGTGTGC--TCT-AGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
FD955915       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY950368       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD953765       --> GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus cv Rat-Tail Radish #3870
EV540975       --> GGGTATGCACTCTAAGAAGCCTGGACACTGCTTTTGGATTTACCAGATGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926281       --> GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTCTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
EW721420       --> GAGTGTGC-CTCTAAGAAGCCTGGACACTGCTTTTGGATTTAACAGATGA  Raphanus sativus var. oleiformis
FD538580       --> GGGTATGCACTCTAAGAAGCCTGGACACTGCTTTTGGATTTACCAGATGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN17241        --> CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCAAA
EV536554       <-- CTTGGTGGCTCCTTCTTTCCACCCTTTT-GACGAGCTCTGAGTTCCCACA
EW714890       <-- CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
EY929972       <-- CTTGGTGGCTCCTTCTTTCCATCCTTTTTGACGAGCTCTCAGTTCCCACA
FD542533       <-- CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
FD938893       <-- CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
EW717422       <-- CTTGGTGGCTC-TTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
FD955915       <-- ..................................................
EY950368       <-- ..................................................
FD953765       --> CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
EV540975       --> CTTGGTGGCTCCTTCTTTCCACCCTTTT-GACGAGCTCTGAGTTCCCACA
EY926281       --> CTTGGTGGCTCCTTCTTTCCATCCTTTTTGACGAGCTCTCAGTTCCCACA
EW721420       --> CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA
FD538580       --> CTTGGTGGCTCCTTCTTTCCACCCTTTTTGACGAGCTCTGAGTTCCCACA

               251    -    301
UN17241        --> TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
EV536554       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
EW714890       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
EY929972       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
FD542533       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
FD938893       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTATCTCTT
EW717422       <-- TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
FD955915       <-- ..........................................TCTCTCTT
EY950368       <-- ..................................................
FD953765       --> TAGAAGTCAGCTTCTTCTGCTCCATAAGTGCCTTCTCCGACTTCTCTCTT
EV540975       --> TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
EY926281       --> TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
EW721420       --> TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT
FD538580       --> TAGAAGTCAGCTTCTTCTGCTCCACAAGTGCCTTCTCCGACTTCTCTCTT

               301    -    351
UN17241        --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EV536554       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EW714890       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EY929972       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
FD542533       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
FD938893       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EW717422       <-- GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
FD955915       <-- GCCTCTACACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EY950368       <-- ......TCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
FD953765       --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EV540975       --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EY926281       --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
EW721420       --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG
FD538580       --> GCTTCTTCACAAGTCTCCATACCGGAGTTGCACTTATCCGCCTCCTTCTG

               351    -    401
UN17241        --> GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EV536554       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EW714890       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTC
EY929972       <-- GTAAGAGGATGTGATTTTCTTGGCTTCTAGCAGACCTGTGTCTACTCGTT
FD542533       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
FD938893       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EW717422       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
FD955915       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EY950368       <-- GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
FD953765       --> GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EV540975       --> GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
EY926281       --> GTAAGAGGATGTGATTTTCTTGGCTTCTAGCAGACCTGTGTCTACTCGTT
EW721420       --> GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT
FD538580       --> GAAAGAGGATGTGATCTTCTTGGCCTCTAACAGACCTGTGTCTACTCGTT

               401    -    451
UN17241        --> TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EV536554       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EW714890       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EY929972       <-- TGAGTTTCTCCGTGGATGCTGCTTCACGTTGCTTCAGCTCCTCTGTTAAT
FD542533       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
FD938893       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EW717422       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
FD955915       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EY950368       <-- TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
FD953765       --> TGTGTTCCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EV540975       --> TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
EY926281       --> TGAGTTTCTCCGTGGATGCTGCTTCACGTTGCTTCAGCTCCTCTGTTAAT
EW721420       --> TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT
FD538580       --> TGTGTTTCTCCATGGATGCTGCTTCGCGTTGCTTCAGTTCCTCTGTTAAT

               451    -    501
UN17241        --> AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EV536554       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EW714890       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EY929972       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
FD542533       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
FD938893       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EW717422       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
FD955915       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EY950368       <-- AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
FD953765       --> AGCTCAGCGTAATTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EV540975       --> AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EY926281       --> AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
EW721420       --> AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT
FD538580       --> AGCTCAGCGTAGTTCTTCTCTGTGTCTTCGTTCACCTCTGAGTCATGCTT

               501    -    551
UN17241        --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EV536554       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EW714890       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EY929972       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
FD542533       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
FD938893       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EW717422       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
FD955915       <-- TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EY950368       <-- TGCACAATCTCCAAAAGGTCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
FD953765       --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EV540975       --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EY926281       --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
EW721420       --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA
FD538580       --> TGCACAATCTCCAAAAGATCCATTGCTGAGTCCTTTGGGGATGGTGAGAA

               551    -    601
UN17241        --> GAGGCACGGAAGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- GAGGCACGGAGGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus sativus cv GSK3-1
EV536554       <-- GAGGCACGGAGGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW714890       <-- GAGGCACGGAAGAGCAGTCGCAGACGCAAGGAGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
EY929972       <-- GAGGCACGGAAGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
FD542533       <-- GAGGCACGGAGGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD938893       <-- GAGGCACGGAAGAGCAGTCGCAGACGCAAGGAGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
EW717422       <-- GAGGCACGGAAGAGCAGTCGCAGACGCAAGGAGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
FD955915       <-- GAGGCACGGAAGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus sativus cv Rat-Tail Radish #3870
EY950368       <-- GTGGCACGGAAGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD953765       --> GAGGCACGGAGGAGCAGTCGCAGACGC.......................  Raphanus sativus cv Rat-Tail Radish #3870
EV540975       --> GAGGCACGGAGGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926281       --> GAGGCACGGAAGAGCAGTCGCAGACGCAAGGGGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
EW721420       --> GAGGCACGGAAGAGCAGTCGCAGACGCAAGGAGAGCAAGAAGAGGCGGAA  Raphanus sativus var. oleiformis
FD538580       --> GAGGCACG..........................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN17241        --> GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGCGGGCCGAGTATGTA
EV536554       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
EW714890       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGGGGACCGAGTATGTA
EY929972       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
FD542533       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
FD938893       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
EW717422       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
FD955915       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAAAGAGGAGGACCGAGTATGTA
EY950368       <-- GCGACAAGTGCCTCGGTGAGGTGCCAGTAAAGAGGAGGACCGAGTATGTA
FD953765       --> ..................................................
EV540975       --> GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
EY926281       --> GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
EW721420       --> GCGACAAGTGCCTCGGTGAGGTGCCAGTAGAGAGGAGGACCGAGTATGTA
FD538580       --> ..................................................

               651    -    701
UN17241        --> ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAACGCCGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
EV536554       <-- ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
EW714890       <-- ACCGATCATGCTCAGAGCAAGCAAAGTAAGTCCAACTTTCAACGCCGCCG
EY929972       <-- ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
FD542533       <-- ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
FD938893       <-- ACCGATCATGCTCAGAGCAAGCAAAGTAAGTCCAACTTTCAACGCCGCCG
EW717422       <-- ACCGATCATGCTCAGAGCAAGCAAAGTAAGTCCAACTTTCAACGCCGCCG
FD955915       <-- ACCGATCATGCTCAGAGCTAGTAAAGTCAGTCCAACTTTCAACGCCGCCG
EY950368       <-- ACCGATCATGCTCAGAGCTAGTAAAGTCAGTCCAACTTTCAACGCCGCCG
FD953765       --> ..................................................
EV540975       --> ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
EY926281       --> ACCGATCATGCTCAGAGCAAGCAAAGTCAGTCCAACTTTCAAAGCCGCCG
EW721420       --> ACCGATCATGCTCAGAGCAAGCAAAGTAAGTCCAACTTTCAACGCCGCCG
FD538580       --> ..................................................

               701    -    751
UN17241        --> TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAA--GATTTTGTGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- TGTGCTTCGCCAT-ACCG-GGTAGATCTTGCGAAAA--GATTTTGTGTTT
EV536554       <-- TGTGCTTCGCCATTACCGAGT-AGATCTTGC-AAAA--GATTTTATGTTT
EW714890       <-- TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAA-AGATTTTGTGTTT
EY929972       <-- TGTGCTTCGCCATTACCGAGT-AGATCTTGC-AAAA--GATTTTATGTTT
FD542533       <-- TGTGCTTCGCCATTACCGAGT-AGATCTTGC-AAAA--GATTTTATGTTT
FD938893       <-- TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAA-AGATTTTGTGTTT
EW717422       <-- TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAA-AGATTTTGTGTTT
FD955915       <-- TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAAAAGATTTTGTGTTT
EY950368       <-- TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAAAAGATTTTGTGTTT
FD953765       --> ..................................................
EV540975       --> TGTGCTTCGCCATTACCGAGT-AGATCTTGC-AAAA--GAT.........
EY926281       --> TGTGCTTCGCCATTACCGAGT-AGATCTTGC-AAAA--GATTTTATGTTT
EW721420       --> TGTGCTTCGCCAT-ACCGAGTTAGATCTTGC-AAAA-AGATTTTGTGTTT
FD538580       --> ..................................................

               751    -    801
UN17241        --> CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGAACTGGATTGGAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- CGAGATGGATTCAGCTCTT--TCAGTGGAGACAGAACTGGAT-GGAGACT
EV536554       <-- CGAAATGGATTCAGCTCTT--TCAGTGGAGACAGAACTGGATTGGAGACT
EW714890       <-- CGAGATGGATTCAGCTCTTTTTCAGTcc......................
EY929972       <-- CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGcc..............
FD542533       <-- CGAAATGGATTCAGCTCTT--TCAGTGGAGACAGAACTGGATTGGAGACT
FD938893       <-- CGAGATGGATTCAGCTCTTTTTCAGTcc......................
EW717422       <-- CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGAACTGGATTGGAGACT
FD955915       <-- CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGAACTGGATTGGAGACT
EY950368       <-- CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGAACTGGATTGGAGACT
FD953765       --> ..................................................
EV540975       --> ..................................................
EY926281       --> CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGcc..............
EW721420       --> CGAGATGGATTCAGCTCTTTTTCAGTGGAGACAGAACTGGATTGGAGACT
FD538580       --> ..................................................

               801    -    851
UN17241        --> CTGATTGTCTATATCGCCCACTCGGGTTCTGTCGGTGGTGTTTATTTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY434551       <-- CTGA..............................................
EV536554       <-- CTGATTGTCTATATCGCCCACTCGGGTTCTGTCGGTGGTGTTTATTTACC
EW714890       <-- ..................................................
EY929972       <-- ..................................................
FD542533       <-- CTGATTGTCTATATCccc................................
FD938893       <-- ..................................................
EW717422       <-- CTGATTGTCTATATCGCCCACTCGGGTTCTGTCGGTGGTGTTTATTTcc.
FD955915       <-- CTGATTGTCTATATCGCCCACTCGGGTTCTGTCGGTGGTGTTTATTTcc.
EY950368       <-- CTGATTGTCTATATCGCCCACTCGGGTTCTGTCGGTGGTGTTTATTTACC
FD953765       --> ..................................................
EV540975       --> ..................................................
EY926281       --> ..................................................
EW721420       --> CTGATTGTCTATATCGC.................................
FD538580       --> ..................................................

               851    -    901
UN17241        --> GGTGAAATGCATTAGCCC
                   ~~~~~~~~~~~~~~~~~~
FY434551       <-- ..................
EV536554       <-- GGTGAAATGCATTAGCCC
EW714890       <-- ..................
EY929972       <-- ..................
FD542533       <-- ..................
FD938893       <-- ..................
EW717422       <-- ..................
FD955915       <-- ..................
EY950368       <-- GGTcc.............
FD953765       --> ..................
EV540975       --> ..................
EY926281       --> ..................
EW721420       --> ..................
FD538580       --> ..................