RadishBase

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Alignment for radish unigene UN17266

               -1     -     49
UN17266        --> ..CTTCTTCTCTCGTCTCTAAATATTTCTGGAAGCAGCAGCATTCAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ggCTTCTTCTCTCGTCTCTAAATATTTCTGGAAGCAGCAGCATTCAACTG
FD940711       --> ...........ggGTCTCTAAATATTTCTGGAAGCAGCAGCATTCAACTG
FY454188       --> .....................ATATTTCTGGAAGCAGCAGCATTCAACTG
FY452274       --> ........................................CATTCAACTG
FY434916       --> .........................................ATTCA-CTG
FY430184       --> ..................................................
FY441477       --> ..................................................
FY434348       --> ..................................................
FY451636       --> ..................................................
FD971408       --> ..................................................
EX894724       --> ..................................................
EY922756       --> ..................................................

               49     -     99
UN17266        --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FD940711       --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FY454188       --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FY452274       --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FY434916       --> TACTGCAGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FY430184       --> ......AGATTCGATCGAAGTT-ATTAGATCCGGGATTTTCCTCCCTATA
FY441477       --> ......AGATTCGATCGAAGTTTATTAGATCCGGGATTTTCCTCCCTATA
FY434348       --> ............................ATCCGGGATTTTCCTCCCTATA
FY451636       --> .............................TCCGGGATTTTCCTCCCTATA
FD971408       --> ..................................................
EX894724       --> ..................................................
EY922756       --> ..................................................

               99     -    149
UN17266        --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FD940711       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY454188       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY452274       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY434916       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY430184       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY441477       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY434348       --> TATTTGTATAAAACTAAGAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FY451636       --> TATTTGTATAAAACTAACAAAAAAGTTTCGATTTCTTTAAGCGCAGTTCG
FD971408       --> ..................................................
EX894724       --> ..................................................
EY922756       --> ..................................................

               149    -    199
UN17266        --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAA-CATATTCTTTAGGG
FD940711       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAA-CATATTCTTTAGGG
FY454188       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY452274       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY434916       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY430184       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY441477       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY434348       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FY451636       --> TGTTTGAATCCGCTTGAAATTAGAAAAACAAAAAAACATATTCTTTAGGG
FD971408       --> ..................................................
EX894724       --> ..................................................
EY922756       --> ..................................................

               199    -    249
UN17266        --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TTTTGGTTTTGTTTCCACTGGTGGTGTTGGATTAATATATA------AAT
FD940711       --> TTTTGGTTTTGTTTCCACTGGTGGTGTTGGATTAATATATA------AAT
FY454188       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY452274       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY434916       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY430184       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY441477       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY434348       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FY451636       --> TTTTGGTTTAGTTTCGACTGTGGGTGTTGGATTAATATATATATATAAAT
FD971408       --> ..................................................
EX894724       --> ..................................................
EY922756       --> ..................................................

               249    -    299
UN17266        --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FD940711       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY454188       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY452274       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY434916       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY430184       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY441477       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY434348       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FY451636       --> ATGGATAAGAAGAAGGTCGCCGTTCCACTTGTCTGCCATGGCCATTCAAG
FD971408       --> ......................................gGGCCATTCAAG
EX894724       --> ..................................................
EY922756       --> ..................................................

               299    -    349
UN17266        --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATCACCCCTGATGGTTTCTTCC
FD940711       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATCACCCCTGATGGTTTCTTCC
FY454188       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY452274       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY434916       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY430184       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY441477       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY434348       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FY451636       --> ACCTGTTGTTGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
FD971408       --> ACCTGTTGTCGATTTGTTCTACAGTCCAATTACCCCTGATGGTTTCTTCC
EX894724       --> ..................................................
EY922756       --> ..................................................

               349    -    399
UN17266        --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TCATCAGCGCCAGTAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FD940711       --> TCATCAGCGCCAGTAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY454188       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY452274       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY434916       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY430184       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY441477       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY434348       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FY451636       --> TCATCAGCGCCAGCAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
FD971408       --> TCATCAGCGCCAGTAAAGATTCACATCCAATGTTGAGAAACGGGGAGACT
EX894724       --> ..................................................
EY922756       --> ..................................................

               399    -    449
UN17266        --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FD940711       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY454188       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY452274       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY434916       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY430184       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY441477       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY434348       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FY451636       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAAGGTGCGGTGTGGAGTTC
FD971408       --> GGAGACTGGATTGGTACCTTTGAAGGTCATAAGGGTGCGGTGTGGAGTTC
EX894724       --> ..................................................
EY922756       --> ..................................................

               449    -    499
UN17266        --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ..................................................
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> TTGCCTCGACAACAACGCTCTACGTGCTGCCTCTGCATCTGCTGATTTTT
FD940711       --> TTGCCTCGACAACAACGCTCTACGTGCTGCCTCTGCATCTGCTGATTTTT
FY454188       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY452274       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY434916       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY430184       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY441477       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY434348       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FY451636       --> TTGCCTCGACAACAACGCTCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
FD971408       --> TTGCCTCGACAACAACGCCCTACGTGCTGCTTCTGCTTCTGCTGATTTTT
EX894724       --> ..................................................
EY922756       --> ..................................................

               499    -    549
UN17266        --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- ................................................AG
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FD940711       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY454188       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY452274       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY434916       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY430184       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY441477       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY434348       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FY451636       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
FD971408       --> CAGCGAAACTCTGGGATGCGTTAACAGGAGATGTGCTGCATTCTTTTGAG
EX894724       --> ..................................................
EY922756       --> ..................................................

               549    -    599
UN17266        --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FD967549       <-- ..................................................
EX892767       <-- ..................................................
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> CACAAGCATATTGTTCGAGCATGTGCCTTCTCAGAG-ATACAAAATTGCT
FD940711       --> CACAAGCATATTGTTCGAGCATGTGCCTTCTCAGAGGATACAAAACTGCT
FY454188       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY452274       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY434916       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY430184       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY441477       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY434348       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FY451636       --> CACAAGCATATTGTTCGAGCGTGTGCCTTCTCAGAGGATACAAAATTGCT
FD971408       --> CACAAGCATATTGTTCGAGTATGTGCCTTCTCAGAGGATACAAAATTGCT
EX894724       --> ..................................................
EY922756       --> ..................................................

               599    -    649
UN17266        --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FD967549       <-- .............................................CCGGT
EX892767       <-- .................................................t
FD936523       <-- ..................................................
EV547205       <-- ..................................................
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> GATCACTGGAGGATTT..................................
FD940711       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGAt..........
FY454188       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY452274       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY434916       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY430184       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY441477       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY434348       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FY451636       --> GATCACTGGAGGATTTGAGAAGATTCTTCGTGTATTTGACTTGAACCGGT
FD971408       --> GATCACTGGAGGATTTGAGAAGATACTCCGTGTATTTGACTTGAACCGGT
EX894724       --> ..................................................
EY922756       --> ..................................................

               649    -    699
UN17266        --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FD967549       <-- TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- gGGATGCACCTCCCCCAGA-GTCGATAAATCCCCTGGATCCATCAGAACT  Raphanus sativus var. oleiformis
FD936523       <-- ..........TCCCACAGAGGTCGATAAATCCCCTGGATCCATCAGAACT  Raphanus sativus var. oleiformis
EV547205       <-- .............ccCAGAGGTCGATAAATCCCCTGGATCCATCAGAACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- ..................................................  Raphanus sativus var. oleiformis
FY445266       <-- ..................................................  Raphanus sativus cv GSK3-1
EX899007       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY452274       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY434916       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY430184       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY441477       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY434348       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FY451636       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACC  Raphanus sativus cv GSK3-1
FD971408       --> TGGATGCACCTCCCACAGAAGTCGATAAATCTCCTGGATCCATCAGAACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY922756       --> ..................................................  Raphanus raphanistrum subsp. landra

               699    -    749
UN17266        --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FD967549       <-- CTCACATGGCTTCACAGTGATCAAACAATATTAAGTTCTTGCACTGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- CTCACATGGCTTCACAGTGATCAAACAATATTAAGTTCTTGCACTGATAT  Raphanus sativus var. oleiformis
FD936523       <-- CTCACATGGCTTCACAGTGATCAAACAATATTAAGTTCTTGCACTGATAT  Raphanus sativus var. oleiformis
EV547205       <-- CTCACATGGCTTCACAGTGATCAAACAATATTAAGTTCTTGCACTGATAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- ..................................................  Raphanus sativus var. oleiformis
FY445266       <-- ..................................................  Raphanus sativus cv GSK3-1
EX899007       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY452274       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY434916       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY430184       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY441477       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY434348       --> CTCACATGGCTTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FY451636       --> CTCACATGGATTCACAGTGATCAAACTATATTAAGTTCTTGCACTGATAT  Raphanus sativus cv GSK3-1
FD971408       --> CTCACATGGCTTCACAGTGATCAAACAATATTAAGTTCTTGCACTGATAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY922756       --> ..................................................  Raphanus raphanistrum subsp. landra

               749    -    799
UN17266        --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FD967549       <-- TGGTGGCGTCAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAC  Raphanus sativus var. oleiformis
FD936523       <-- TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAC  Raphanus sativus var. oleiformis
EV547205       <-- TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- ..................................................  Raphanus sativus var. oleiformis
FY445266       <-- ..................................................  Raphanus sativus cv GSK3-1
EX899007       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY452274       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY434916       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY430184       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY441477       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY434348       --> TGGTGGCGTGAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAT  Raphanus sativus cv GSK3-1
FY451636       --> TGGTGGCGTGAG......................................  Raphanus sativus cv GSK3-1
FD971408       --> TGGTGGCGTCAGGTTATGGGATGTTAGGAGTGGGAAGATTGTGCAGACAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY922756       --> ..................................................  Raphanus raphanistrum subsp. landra

               799    -    849
UN17266        --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FD967549       <-- TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
EX892767       <-- TGGAAACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FD936523       <-- TGGAAACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
EV547205       <-- TGGAAACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FD566772       <-- ..................................................
FY445266       <-- ..................................................
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ..................................................
FD940711       --> ..................................................
FY454188       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FY452274       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCCAGATGGACGA
FY434916       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FY430184       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FY441477       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FY434348       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
FY451636       --> ..................................................
FD971408       --> TGGAGACAAAGTCTCCTGTCACCAGTGCTGAAGTGAGCCAAGATGGACGA
EX894724       --> ..................................................
EY922756       --> ..................................................

               849    -    899
UN17266        --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
FD967549       <-- TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
EX892767       <-- TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
FD936523       <-- TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
EV547205       <-- TACATTACTACTGCTGCTGGGTCAACTGTTAAATTCTGGGACGCTAACCA
FD566772       <-- ....................GTCAACTGTTAAATTCTGGGACGCTAACCA
FY445266       <-- ....................................TGGGACGCTAACCA
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ..................................................
FD940711       --> ..................................................
FY454188       --> TACATTACTAC.......................................
FY452274       --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGG...........
FY434916       --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
FY430184       --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTA....
FY441477       --> TACATTACTACTGCTGATGGGTCAACTG......................
FY434348       --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
FY451636       --> ..................................................
FD971408       --> TACATTACTACTGCTGATGGGTCAACTGTTAAATTCTGGGACGCTAACCA
EX894724       --> ..................................................
EY922756       --> ..................................................

               899    -    949
UN17266        --> TTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus sativus cv GSK3-1
FD967549       <-- TTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATCGAGTCTGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- TTTTGGACTGGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus sativus var. oleiformis
FD936523       <-- TTTTGGACTGGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus sativus var. oleiformis
EV547205       <-- TTTTGGACTGGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- TTTTGGACTGGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus sativus var. oleiformis
FY445266       <-- TTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATTGAGTCTGCAT  Raphanus sativus cv GSK3-1
EX899007       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- ..................................................  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> TTTTGGACTAGTGAAGAGTTATGACATGCCATGC................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> TTTTGGACTAGTGAAGAGTTATGACATGCCATGC................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> TTTTGGACTAGTGAAGAGTTATGACATGCCATGCAATATCGAGTCTGCAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY922756       --> ..................................................  Raphanus raphanistrum subsp. landra

               949    -    999
UN17266        --> CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
FD967549       <-- TTCTGGAGCCTAAGTCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
EX892767       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
FD936523       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
EV547205       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
FD566772       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
FY445266       <-- CTCTGGAGCCTAAATCTGGTGAAAAGTTTGTAGCTGGCGGTGAGGATATG
EX899007       <-- ..................................................
EY918662       <-- ..................................................
EX888921       --> ..................................................
FD940711       --> ..................................................
FY454188       --> ..................................................
FY452274       --> ..................................................
FY434916       --> ..................................................
FY430184       --> ..................................................
FY441477       --> ..................................................
FY434348       --> ..................................................
FY451636       --> ..................................................
FD971408       --> CTCTGGAGCCTAAGTCTGGTGAAA-GTTTGTAGCTGGCGGTGAGGATATG
EX894724       --> ..................................................
EY922756       --> ..................................................

               999    -   1049
UN17266        --> TGGGTCCGAATGTTTGATTTCTACACCGGAGAGGAGATTGGATGCAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TGGGTCCGAATGTTTGATTTCTACACCGGCGAGGAGATTGGATGCAACAA  Raphanus sativus cv GSK3-1
FD967549       <-- TGGGTCCGAATGTTTGATTTCTACACCGGCGAGGAGATTGGATGCAACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- TGGGTCCGAATGTTTGATTTCTACACCGGAGAGGAGATTGGATGCAACAA  Raphanus sativus var. oleiformis
FD936523       <-- TGGGTCCGAATGTTTGATTTCTACACCGGAGAGGAGATTGGATGCAACAA  Raphanus sativus var. oleiformis
EV547205       <-- TGGGTCCGAATGTTTGATTTCTACACCGGAGAGGAGATTGGATGCAACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- TGGGTCCGAATGTTTGATTTCTACACCGGAGAGGAGATTGGATGCAACAA  Raphanus sativus var. oleiformis
FY445266       <-- TGGGTCCGAATGTTTGATTTCTACACCGGCGAGGAGATTGGATGCAACAA  Raphanus sativus cv GSK3-1
EX899007       <-- ..............................gtGGAGATTGGATGCAACAA  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- .................................................g  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> TGGGTCCGAATGTTTGATTTCT............................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> ..............................gtGGAGATTGGATGCAACAA  Raphanus sativus cv Early Scarlet Globe
EY922756       --> .................................................g  Raphanus raphanistrum subsp. landra

               1049   -   1099
UN17266        --> GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
FD967549       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EX892767       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
FD936523       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EV547205       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
FD566772       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
FY445266       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EX899007       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EY918662       <-- GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EX888921       --> ..................................................
FD940711       --> ..................................................
FY454188       --> ..................................................
FY452274       --> ..................................................
FY434916       --> ..................................................
FY430184       --> ..................................................
FY441477       --> ..................................................
FY434348       --> ..................................................
FY451636       --> ..................................................
FD971408       --> ..................................................
EX894724       --> GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT
EY922756       --> GGGGCATCATGGTCCGGTACACTGCGTGAGGTTTTCACCGACGGGTGAGT

               1099   -   1149
UN17266        --> CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
FD967549       <-- CCTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EX892767       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGGTCTGGCAGACGACA
FD936523       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EV547205       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
FD566772       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
FY445266       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EX899007       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EY918662       <-- CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EX888921       --> ..................................................
FD940711       --> ..................................................
FY454188       --> ..................................................
FY452274       --> ..................................................
FY434916       --> ..................................................
FY430184       --> ..................................................
FY441477       --> ..................................................
FY434348       --> ..................................................
FY451636       --> ..................................................
FD971408       --> ..................................................
EX894724       --> CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA
EY922756       --> CGTACGCCTCGGGGTCTGAAGACGGGACCATCAGGATCTGGCAGACGACA

               1149   -   1199
UN17266        --> CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus cv GSK3-1
FD967549       <-- CCAAATCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus var. oleiformis
FD936523       <-- CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus var. oleiformis
EV547205       <-- CCAAATCATAGTGTGGATGAGGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- CCAAATCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus var. oleiformis
FY445266       <-- CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus cv GSK3-1
EX899007       <-- CCAAATCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> CCAAATCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus sativus cv Early Scarlet Globe
EY922756       --> CCAAACCATAGTGTGGATGAAGTGGCTAAGAAGATTGAAGGCTTTCACAT  Raphanus raphanistrum subsp. landra

               1199   -   1249
UN17266        --> CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus cv GSK3-1
FD967549       <-- CAACAAAGAAGGCAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- CAACAAGGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus var. oleiformis
FD936523       <-- CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus var. oleiformis
EV547205       <-- CAACAAAGAAGGCAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- CAACAAAGAAGGCAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus var. oleiformis
FY445266       <-- CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus cv GSK3-1
EX899007       <-- CAACAAAGAAGGCAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> CAACAAAGAAGGCAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus sativus cv Early Scarlet Globe
EY922756       --> CAACAAAGAAGGAAAACCCGCAGAGAAAGTTTCTGATGCTTAGGCAGAAG  Raphanus raphanistrum subsp. landra

               1249   -   1299
UN17266        --> AACACGGAAAAAGCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- AACACGGAAAAAGCCTTTTT-CTCTTTAGTTCTTGATGTGCTATGTTTCG  Raphanus sativus cv GSK3-1
FD967549       <-- AACACGGAAAA-GCCTTTTT-CTCTTTAGTTCTTGATGTGCTATGTTTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- AACACGGAAAAAGCCTTTTT-CTCTTTAGTTCTTGATGCGCTATGTTTCG  Raphanus sativus var. oleiformis
FD936523       <-- AACACGGAAAAAGCCTTTTT-CTCTTTAGTTCTTGATGCGCTATGTTTCG  Raphanus sativus var. oleiformis
EV547205       <-- AACACGGAAAA-GCCTTTTTTCTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- AACACGGAAAA-GCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus sativus var. oleiformis
FY445266       <-- AACACGGAAAAAGCCTTTTT-CTCTTTAGTTCTTGATGTGCTATGTTTCG  Raphanus sativus cv GSK3-1
EX899007       <-- AACACGGAAAA-GCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- AACACGGAAAAAGCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> AACACGGAAAA-GCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus sativus cv Early Scarlet Globe
EY922756       --> AACACGGAAAAAGCCTTTTT-CTCTT-AGTTCTTGATGCGCTATGTTTCG  Raphanus raphanistrum subsp. landra

               1299   -   1349
UN17266        --> TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TGTGTGTTTGTGTTTCCTGACTGAACATACAGAGAAAAAGAAAAACACAA  Raphanus sativus cv GSK3-1
FD967549       <-- TGTGTGTTTGTGTTTCCTGACTGAACATACAGAGAAAAAGAAAAACACAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- TGTGTGTTTGTGTTTCCTGACTGAACATACAGAGAAAAAGAAAAACACAA  Raphanus sativus var. oleiformis
FD936523       <-- TGTGTGTTTGTGTTTCCTGACTGAACATACAGAGAAAAAGAAAAACACAA  Raphanus sativus var. oleiformis
EV547205       <-- TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus sativus var. oleiformis
FY445266       <-- TGTGTGTTTGTGTTTCCTGACTGAACATACAGAGAAAAAGAAAAACACAA  Raphanus sativus cv GSK3-1
EX899007       <-- TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus sativus cv Early Scarlet Globe
EY922756       --> TGTGTGTTTGTGTTTCCTGACTGAATATACAGAGAAAAAGAAAAACACAA  Raphanus raphanistrum subsp. landra

               1349   -   1399
UN17266        --> GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTGGATCTTTTTCGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- GGACCGGACCTTTCCTTATCTTTTTAGTTTT-CTTGGATCTTTTTCGTTA  Raphanus sativus cv GSK3-1
FD967549       <-- GGACCGGACCTTTCCcc.................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- GGACCGGACCTTTCCTTATCTTTTTAGTTTT-CTTGGATCTTTTTCGTTA  Raphanus sativus var. oleiformis
FD936523       <-- GGACCGGACCTTTCCTTATCTTTTTAGTTTT-CTTGGATCTTTTTCGTTA  Raphanus sativus var. oleiformis
EV547205       <-- GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTGGATCTTTTTCGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTGGATCTTTTTCGTTA  Raphanus sativus var. oleiformis
FY445266       <-- GGACCGGACCTTTCCTTATCTTTTTAGTTTT-CTTGGATCTTTTTCGTTA  Raphanus sativus cv GSK3-1
EX899007       <-- GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTGGATCTTTTTCGTTA  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTAGATCTTTT-CGTTA  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTGGATCTTTTTCGTTA  Raphanus sativus cv Early Scarlet Globe
EY922756       --> GGACCGGACCTTTCCTTATCTTTT-AGTTTTTCTTAGATCTTTT-CGTTA  Raphanus raphanistrum subsp. landra

               1399   -   1449
UN17266        --> TTATATAAAACCTTGGGACCTGTTGTGCAATTTATGAAATAATTTGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FY430983       <-- TTATATAAAACC......................................  Raphanus sativus cv GSK3-1
FD967549       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX892767       <-- TTATATAAAACCTTGGGACCTGTTGTGCAATTTATGAAATAATTTGACc.  Raphanus sativus var. oleiformis
FD936523       <-- TTATATAAAACCTTGGGACCTGTTGTGC......................  Raphanus sativus var. oleiformis
EV547205       <-- TTATATAAAAC-TTGGGACTTGTTGTGCAATTTATGAAATAATTTGACTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD566772       <-- TTATATAAAAACTTGGGACTTGTTGTGCAATTTATGAAATAATTTGACTT  Raphanus sativus var. oleiformis
FY445266       <-- TTATATAAAACCTTGGGACCTGTTGgc.......................  Raphanus sativus cv GSK3-1
EX899007       <-- TTATATAAAAACTTGGGACTTGTTGTac......................  Raphanus sativus cv Early Scarlet Globe
EY918662       <-- TTATATAAAACCTTTGGACCTGTTGTGCAATTTATGAAATAATTTGACc.  Raphanus raphanistrum subsp. landra
EX888921       --> ..................................................  Raphanus sativus var. oleiformis
FD940711       --> ..................................................  Raphanus sativus var. oleiformis
FY454188       --> ..................................................  Raphanus sativus cv GSK3-1
FY452274       --> ..................................................  Raphanus sativus cv GSK3-1
FY434916       --> ..................................................  Raphanus sativus cv GSK3-1
FY430184       --> ..................................................  Raphanus sativus cv GSK3-1
FY441477       --> ..................................................  Raphanus sativus cv GSK3-1
FY434348       --> ..................................................  Raphanus sativus cv GSK3-1
FY451636       --> ..................................................  Raphanus sativus cv GSK3-1
FD971408       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX894724       --> TTATATAAAAACTTGGGACTTGTTGTac......................  Raphanus sativus cv Early Scarlet Globe
EY922756       --> TTATATAAAACCTTTGGACCTGTTGTGCAATTTATGAAATAATTTGACc.  Raphanus raphanistrum subsp. landra

               1449   -   1499
UN17266        --> TTGCC
                   ~~~~~
FY430983       <-- .....
FD967549       <-- .....
EX892767       <-- .....
FD936523       <-- .....
EV547205       <-- TTGCC
FD566772       <-- T....
FY445266       <-- .....
EX899007       <-- .....
EY918662       <-- .....
EX888921       --> .....
FD940711       --> .....
FY454188       --> .....
FY452274       --> .....
FY434916       --> .....
FY430184       --> .....
FY441477       --> .....
FY434348       --> .....
FY451636       --> .....
FD971408       --> .....
EX894724       --> .....
EY922756       --> .....