Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17285

               1      -     51
UN17285        --> GGACTACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- ...ggACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
EV544760       <-- ...ggACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
FD985466       <-- ...ggACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
FD976142       <-- ..........................TAAGGACGAAATAAAGGCAAAAGG
EY895150       <-- ..................................................
EX753786       <-- ..................................................
EY899357       --> GGACTACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
FD980219       --> GGACTACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
EV549248       --> ...ggACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
FD989719       --> ...ggACCCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
EX750280       --> .......CCCGTCTCTGAAACTCTCTTAAGGACGAAATAAAGGCAAAAGG
EV524935       --> ...................ACTCTCTTAAGGACGAAATAAAGGCAAAAGG

               51     -    101
UN17285        --> TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
EV544760       <-- TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
FD985466       <-- TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
FD976142       <-- TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTTTTATCCA
EY895150       <-- .........AATGGTAACAAAGAACAACAGAACCGACGATGTCTTATCCA
EX753786       <-- ............GGCAACGAAGAACAACAGAACCGACGATGTTTTATCCA
EY899357       --> TTCGGGCGAAATGGTAACAAAGAACAACAGAACCGACGATGTCTTATCCA
FD980219       --> TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
EV549248       --> TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
FD989719       --> TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA
EX750280       --> TTCGAGCGAAATGGCAACGAAGAACAACAGAACCGACGATGTCTTATCCA
EV524935       --> TTCGAGCGAAATGGCAACAAAGAACAACAGAACCGACGATGTCTTATCCA

               101    -    151
UN17285        --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- CTCAACAAGAAGAGCCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
EV544760       <-- CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
FD985466       <-- CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
FD976142       <-- CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
EY895150       <-- CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
EX753786       <-- CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTT
EY899357       --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
FD980219       --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
EV549248       --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
FD989719       --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG
EX750280       --> CTCAACAAGAAGAGTCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTT
EV524935       --> CTCAACAAGAAGAGCCTGCCTCTGGTGCAAACAAATACCGTGGACTCGTG

               151    -    201
UN17285        --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EV544760       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
FD985466       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
FD976142       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EY895150       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EX753786       <-- CTAAAGAAAAAGCCTCTTATCTCGCAGGTTCCCAAACGTACTTGGTTTGA
EY899357       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
FD980219       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EV549248       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
FD989719       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EX750280       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA
EV524935       --> CTAAAGAAAAAGCCTCTTATCTCGCAGGATCCCAAACGTACTTGGTTTGA

               201    -    251
UN17285        --> TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
EV544760       <-- TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
FD985466       <-- TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
FD976142       <-- CTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
EY895150       <-- TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
EX753786       <-- TTCCGCAGATTGGGCTTTACACAAGCAAGAATCAAGCCCAGATGAAAGAA
EY899357       --> TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
FD980219       --> CTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
EV549248       --> TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
FD989719       --> TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA
EX750280       --> TTCCGCAGATTGGGCTTTACACAAGCAAGAATCAAGCCCAGATGAAAGAA
EV524935       --> TTCCGCAGATTGGGCTTTACACAAGCAAGAAGCAAGCCCAGATGAAAGAA

               251    -    301
UN17285        --> CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- CTATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EV544760       <-- CAATAGTAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
FD985466       <-- CAATAGCAGTAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
FD976142       <-- CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EY895150       <-- CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EX753786       <-- CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EY899357       --> CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
FD980219       --> CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EV549248       --> CAATAGTAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
FD989719       --> CAATAGCAGTAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EX750280       --> CAATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA
EV524935       --> CTATAGCAGCAATCGAAAATTTAAAACCCAAATATTTTCATATACCTCGA

               301    -    351
UN17285        --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EV544760       <-- AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAAACAGATTC
FD985466       <-- AATGAACTTCCCCCTACCTTTGCATCTGGACAAGGGATTCAGACAGATTC
FD976142       <-- AAGGAACTTCCCCCTCCCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EY895150       <-- AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EX753786       <-- AAGGAACTTCCCCCTCCCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EY899357       --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
FD980219       --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EV549248       --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAAACAGATTC
FD989719       --> AATGAACTTCCCCCTACCTTTGCATCTGGACAAGGGATTCAGACAGATTC
EX750280       --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC
EV524935       --> AAGGAACTTCCCCCTACCTTTGCATCTGGACAAGAGATTCAGACAGATTC

               351    -    401
UN17285        --> AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus
EV544760       <-- AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985466       <-- AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTGATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. landra
FD976142       <-- AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895150       <-- AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus
EX753786       <-- AAGCGTTTAGG-TGCAACGCAAAAAGGGTTTGATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus
EY899357       --> AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus
FD980219       --> AAGCGTTTA.........................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV549248       --> AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989719       --> AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTGATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. landra
EX750280       --> AAGCGTTTAGG-TGCAACGCAAAAAGGGTTTGATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus
EV524935       --> AAGCGTTTAGGGTGCAACGCAAAAAGGGTTTAATGTGGAAATGGAACATG  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN17285        --> ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EV544760       <-- ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
FD985466       <-- ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
FD976142       <-- ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EY895150       <-- ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EX753786       <-- ATTGGTTCAGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EY899357       --> ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
FD980219       --> ..................................................
EV549248       --> ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
FD989719       --> ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EX750280       --> ATTGGTTCAGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC
EV524935       --> ATTGGTTTGGTGTGAGCCAACTCACGTGTATCATACTTCCATAAAAGCTC

               451    -    501
UN17285        --> TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
EV544760       <-- TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
FD985466       <-- TTATGCAGTT-G-TTGTGTTTCGCCTCC-TGGCCTTTATAAATACTTATA
FD976142       <-- TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
EY895150       <-- TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
EX753786       <-- TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACCTATA
EY899357       --> TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
FD980219       --> ..................................................
EV549248       --> TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA
FD989719       --> TTATGCAGTT-G-TTGTGTTTCGCCTCC-TGGCCTTTATAAATACTTATA
EX750280       --> TTATGCAGTTTGTTTGTGTTTTGCCTCCCTGGCCTTTATAAATACCTATA
EV524935       --> TTATGCAGTT-G-TTGTGTTTTGCCTCC-TGGCCTTTATAAATACTTATA

               501    -    551
UN17285        --> AAATACTTATCGTTTCAATAAATGTTTAAAACATTGACATTTGTTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- AAATACTTATCGTTTCAATAAATGTTTAAAACATTGAC............
EV544760       <-- AAATACTTATCGTTTCAATAAATGTTTAAAACATTGACATTTGTTGCTGC
FD985466       <-- AAATACTTATCGTTTCAATAAATGTTTAAAAC..................
FD976142       <-- AAATACTTATCGTTTCAATAAATGTTTAAAACATTGgc............
EY895150       <-- AAATACTTATCGTTTCAATAAATGTTTAAAACATTGACATTTGTTGCTGC
EX753786       <-- ACATACTTATCGTTTCAATAAATGTTTAAAAC..................
EY899357       --> AAATACTTATCGTTTCAATAAATGTTTAAAACATTGACATTTGTTGCTGC
FD980219       --> ..................................................
EV549248       --> AAATACTTATCGTTTCAATAAATGTTTAAAACATTGACATTTGTTGCTGC
FD989719       --> AAATACTTATCGTTTCAATAAATGTTTAAAACATTGcc............
EX750280       --> ACATACTTATCGTTTCAATAAATGTTTAAAACATTGAC............
EV524935       --> AAATACTTATCGTTTCAATAAATGTTTAAAACATTGAC............

               551    -    601
UN17285        --> TTCTTCATTTTCTCTCTCTTTAATATATACAGTAAATCTTAGTGGGGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- ..................................................
EV544760       <-- TTCTTCATTTTCTCTCTCTTTAATATATACAGTAAATCT...........
FD985466       <-- ..................................................
FD976142       <-- ..................................................
EY895150       <-- TTCTTCATTTTCTCTCTCTTTAATATATACAGTAAATCTTAGTGGGGTTT
EX753786       <-- ..................................................
EY899357       --> TTCTTCATTTTCTCTCTCTTTAATATATACAGTAAATCTTAGTGGGGTTT
FD980219       --> ..................................................
EV549248       --> TTCTTCATTTTCTCTCTCTTTAATATATACAGTAAATCT...........
FD989719       --> ..................................................
EX750280       --> ..................................................
EV524935       --> ..................................................

               601    -    651
UN17285        --> TAGTTTTTATTTAAACAGAAAACATTTATAACTCAAAATTTGATGACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- ..................................................
EV544760       <-- ..................................................
FD985466       <-- ..................................................
FD976142       <-- ..................................................
EY895150       <-- TAGTTTTTATTTAAACAGAAAACATTTATAACTCAAAATTTGATGACTCT
EX753786       <-- ..................................................
EY899357       --> TAGTTTTTATTTAAACAGAAAACATTTATAACTCAAAATTTGATGACTCT
FD980219       --> ..................................................
EV549248       --> ..................................................
FD989719       --> ..................................................
EX750280       --> ..................................................
EV524935       --> ..................................................

               651    -    701
UN17285        --> GACTTTAAACCAATAAAATGATTGTCAAGCATCTCTCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV529805       <-- ........................................
EV544760       <-- ........................................
FD985466       <-- ........................................
FD976142       <-- ........................................
EY895150       <-- GACTTTAAACCAATAAAATGATTGTCAAGCATCTCTCAGC
EX753786       <-- ........................................
EY899357       --> GACTTTAAACCAATAAAATGATTGTCAAGCATCTCTCAGC
FD980219       --> ........................................
EV549248       --> ........................................
FD989719       --> ........................................
EX750280       --> ........................................
EV524935       --> ........................................