Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17288

               1      -     51
UN17288        --> GGATCAAAACTGTTCATGTTATTATCTTGATGCACTCTGGTGTTTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> GGATCAAAACTGTTCATGTTATTATCTTGATGCACTCTGGTGTTTCTTTC
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               51     -    101
UN17288        --> TCGATTAATATAATCTCCTAGTTGACAAGGATGAAATCGGAGACTGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TCGATTAATATAATCTCCTAGTTGACAAGGATGAAATCGGAGACTGTTAT
FD936656       --> ...............................................TAT
FY441915       --> ...............................................TAT
EV571630       --> ..................................................
EY911755       --> ..................................................

               101    -    151
UN17288        --> GCTTAAGAACATTGGTGTTTAGGCAGTAAACAACTTTGTTTTCAAATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> GCTTGAGAACATTGGTGTTTAGGCAGTAAACAACTTTGTTTTCAAATCCT
FD936656       --> GCTTAAGAACATTGGTGTTTAGGCAGTAAACAACTTTGTTTTCAAATCCT
FY441915       --> GCTTAAGAACATTGGTGTTTAGGCAGTAAACAACTTTGTTTTCAAATCCT
EV571630       --> ....................AGGCAGTAAACAACTTTGTTTTCAAATGCT
EY911755       --> ....................AGGCAGTAAACAACTTTGTTTTCAAATGCT

               151    -    201
UN17288        --> TAAAGAGAACAAACAGAAAATTATTTCAGAGAAAA-CCACATAGCAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TAAAGAGAACAAACATAAAATTATTTCAGAAAAAA-CCACATAGCAATAA
FD936656       --> TAAAGAGAACAAACAGAAAATTATTTCAGAGAAAA-CCACATAGCAATAA
FY441915       --> TAAAGAGAACAAACAGAAAATTATTTCAGAGAAAA-CCACATAGCAATAA
EV571630       --> TAAAGAGAACAAACATAAA-TTATTTCAGAGAAAAACCACAT-GCAATAA
EY911755       --> TAAAGAGAGCAAACATAAA-TTATTTCAGAGAAAAACCACAT-GCAATAA

               201    -    251
UN17288        --> CACAGAGATATATTCCTTCCTACTTCCAGAGCTTACGCAAAGACATGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> CACAGAGATATATTCCTTCCTACTTCCAGAGCTTACGCAAAGACATGTTC
FD936656       --> CACAGAGATATATTCCTTCCTACTTCCAGAGCTTACGCAAAGACATGTTC
FY441915       --> CACAGAGATATATTCCTTCCTACTTCCAGAGCTTACGCAAAGACATGTTC
EV571630       --> -ACAGAGATATATTCCT----ACTTCCAGAGCGTACGCAAAGACATGTTC
EY911755       --> -ACAGAGATATATTCCT----ACTTCCAGAGCTTACGCAAAGACATGTTC

               251    -    301
UN17288        --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC
FD936656       --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC
FY441915       --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC
EV571630       --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC
EY911755       --> TTCTCTGTGTCTTTCTTCATAACCTTCCCCACTGCCATCTCAAAGTCTTC

               301    -    351
UN17288        --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATGCCCGCCTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATGCCCGCCTCCG
FD936656       --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATACCCGCCTCCG
FY441915       --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATGCCCGCCTCCG
EV571630       --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATACCCGCCTCCG
EY911755       --> CTGTGTCACGTGTACTCTCCTCTCCCGCAGCGCAAACATGCCCGCCTCCG

               351    -    401
UN17288        --> TGCACACCGCCTTCAGCTCAGCACCCGAGGCACCATTCATCTTCTCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TGCACACCGCCTTCAGCTCAGCACCCGAGGCACCATTCATCTTCTCTGCA
FD936656       --> TGCACACCGCCTTCAGCTCAGCACCCGAGGCACCGTTCATCTTCTCTGCA
FY441915       --> TGCACACCGCCTTCAGCTCAGCACCCGAGGCACCATTCATCTTCTCTGCA
EV571630       --> TGCACACCGCCTTCAGCTCAGCACCTGAAGCACCATTCATCTTCTCGGCA
EY911755       --> TGCACACCGCCTTCAGCTCAGCACCTGAAGCACCATTCATCTTCTCGGCA

               401    -    451
UN17288        --> ATCTTTTTCAGATCAATTCCACGCATCAAATTCATCTTCCTCGAGTGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> ATCTTTTTCAGATCAATTCCACGCATCAAATTCATCTTCCTCGAGTGAAT
FD936656       --> ATCTTTTTCAGATCAATTCC..............................
FY441915       --> ATCTTTTTCAGATCAATTCCACGCATCAAATTCATCTTCCTCGAGTGAAT
EV571630       --> ATCTTCTTCAGATCAATTCCACGCATCAAATTCATCTTCCTCGAGTGAAT
EY911755       --> ATCTTCTTCAGATCAATTCCACGCATCAAATTCATCTTCCTCGAGTGAAT

               451    -    501
UN17288        --> CTTCAAGATATCAAAACGTGAATCTTCATTAGGATTGGGGAATTCGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- .cTCAAGATATCAAAACGTGA-TCTTCATTAGGATTGGGGAATTCGATTT
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> CTTCAAGATATCAAAACGTGAATCTTCATTAGGATTGGGGAATTCGATTT
FD936656       --> ..................................................
FY441915       --> CTTCAAGATATCAAAACGTGAATCTTCATTAGGATTGGGGAATTCGATTT
EV571630       --> CTTCAAGATATCAAAACGTGAATCTTCATTAGGATTGGGGAATTCGATTT
EY911755       --> CTTCAAGATATCAAAACGTGAATCTTCATTAGGATTGGGGAATTCGATTT

               501    -    551
UN17288        --> TCCTATCAATCCTTCCTGGCCTGAGAAGAGCTTGATCCAGAATATCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TCCTATCAATC-TTCCTGGC-TGAGAAGAGCTTGATCCAGAATATCAATA
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TCCTATCAATCCTTCCTGGCCTGAGAAGAGCTTGATCCAGAATATCAATA
FD936656       --> ..................................................
FY441915       --> TCCTATCAATCCTTCCTGGCCTGAGAAGAGCTTGATCCAGAATATCAATA
EV571630       --> TCCTATCAATCCTTCCTGGCCTGAGAAGAGCTTGATCCAGAATATCAATA
EY911755       --> TCCTATCAATCCTTCCTGGCCTGAGAAGAGCTTGATCCAGAATATCAATA

               551    -    601
UN17288        --> CGATTTGTCGCCATCAAAACCTTGATTTTGTTTGACGCTTCGAATCCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- CGATTTGTCGCCATCAAAAC-TTGATTTTGTTTGACGCTTCGAATCCGTC
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> CGATTAGTCGCCATCAAAACCTTGATTTTGTTTGACGCTTCGAATCCGTC
FD936656       --> ..................................................
FY441915       --> CGATTTGTCGCCATCAAAACCTTGATTTTGTTTGACGCTTCGAATCCGTC
EV571630       --> CGATTTGTCGCCATCAAAACCTTGATTTTGTTTGACGCTTCGAATCCGTC
EY911755       --> CGATTAGTCGCCATCAGAACCTTGATTTTGTTTGACGCTTCGAATCCGTC

               601    -    651
UN17288        --> AAGTTGATTGAGAAGCTCAAGCATAGTCCGTTGCACCTCACTGTCACCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- AAGTTGATTGAGAAGCTCAAGCATAGTCCGTTGCACCTCACTGTCACCGT
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> AAGTTGATTGAGAAGCTCAAGCATAGTCCGTTGCACCTCACTGTCACCGT
FD936656       --> ..................................................
FY441915       --> AAGTTGATTGAGAAGCTCAAGCATAGTCCGTTGCACCTCACTGTCACCGT
EV571630       --> AAGTTGATTGAGAAGCTCAAGCATAGTCCGTTGCACCTCACTGTCACCGT
EY911755       --> AAGTTAATTGAGAAGCTCAAGCATAGTCCTTTGCACCTCACTGTCACAGT

               651    -    701
UN17288        --> TTCCACTTCCAGATTCCATACGAGCAGACCCGATACTATCGATCTCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TTCCACTTCCAGATTCCATACGAGCAGACCCGATACTATCGATCTCATCC
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> TTCCACTTCCAGAATCCATACGAGCAGACCCGATACTATCGATCTCATCC
FD936656       --> ..................................................
FY441915       --> TTCCACTTCCAGATTCCATACGAGCAGACCCGATACTATCGATCTCATCC
EV571630       --> TTCCACTTCCAGATTCCATACGAGCAGACCCGATACTATCGATCTCATCC
EY911755       --> TTCCACTTCCAGATTCCATACGAGCAGACCCGATACTATCGATCTCATCC

               701    -    751
UN17288        --> ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACGAAAAGTTCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACAAAGAGTTCTCT
FY448167       <-- ...AAGATGATTGATGGTGCATGCTCCCTTGCCATCACGAAAAGTTCTCG
FD940878       <-- ..................................................
EX773150       <-- ..................................................
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACGAAAAGTTCTCG
FD936656       --> ..................................................
FY441915       --> ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACGAAAAGTTCTCG
EV571630       --> ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACAAAGAGTTCTCT
EY911755       --> ATGAAGATGATTGATGGTGCATGCTCCCTTGCCATCACGAAAAGTTCTCG

               751    -    801
UN17288        --> GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCGGAACCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCGGAACCAG
FY448167       <-- GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCGGAACCAG
FD940878       <-- ..................TCCAATGTACTTCTGGACCAGCTCGGAACCAG
EX773150       <-- ....................................CAGCTCGGA-CCAG
EX905827       <-- ..................................................
FD986389       <-- ..................................................
EY948761       <-- ..................................................
FD957720       <-- ..................................................
FD953376       --> GACCATTCGAGAACCTTC................................
FD936656       --> ..................................................
FY441915       --> GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCGGAACCAG
EV571630       --> GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCGGAACCAG
EY911755       --> GACCATTCGAGAACCTTCTCCAATGTACTTCTGGACCAGCTCTGAACCAG

               801    -    851
UN17288        --> AAACTCTGATGAACGTACAATCAGTGTGATGTGCCACAGCTCGAGCCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- AAACTCTGATGAACGTACAATCAGTATGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus cv Early Scarlet Globe
FY448167       <-- AAACTCTGATGAACGTACAATCAGTATGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus cv GSK3-1
FD940878       <-- AAACTCTGATGAAGGTACAGTCAGTGTGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus var. oleiformis
EX773150       <-- AAACTCTGATGAACGTACAATCAGTGTGATGTGCCACAGCTCGAGCCAAA  Raphanus raphanistrum subsp. landra
EX905827       <-- ..........GAACGTACAGTCAGTATGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD986389       <-- ............agGTACAGTCAGTGTGATGTGCCACAGCTCGAGCCAAA  Raphanus raphanistrum subsp. landra
EY948761       <-- .................cagTCAGTATGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus cv Rat-Tail Radish #3870
FD957720       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD953376       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD936656       --> ..................................................  Raphanus sativus var. oleiformis
FY441915       --> AAACTCTGATGAACGTACAATCAGTATGATGTGCCACAGCTCGAGCCAAA  Raphanus sativus cv GSK3-1
EV571630       --> AAACTCTGATGAACGTACAATCAGTGTGATGTGCCACAGCTCGAGCCAAA  Raphanus raphanistrum subsp. landra
EY911755       --> AAACTCTGATGAACGTACAATCAGTGTGATGTGCCACAGCTCGAGCCAAA  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN17288        --> AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
FY448167       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
FD940878       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
EX773150       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
EX905827       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
FD986389       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
EY948761       <-- AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
FD957720       <-- ..................................................
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG
EV571630       --> AGTGTCTTCCCAGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTA
EY911755       --> AGTGTCTTCCCGGTTCCAGGTGGACCATATAACAACACACCCTTTGGCTG

               901    -    951
UN17288        --> CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
FY448167       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
FD940878       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
EX773150       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
EX905827       <-- CGAAATTCCAAGAGACTCGAACAGTTCAGGATGCTTAATTGGCAGCTCAA
FD986389       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
EY948761       <-- CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTAATTGGCAGCTCAA
FD957720       <-- ..................................................
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> CGCAATTCCAAGAGACTCGAACAGTTCAGGATGCTTGATTGGCAGCTCAA
EV571630       --> CGCA..............................................
EY911755       --> CGCAATTCCA-GAGACTCGAACA...........................

               951    -   1001
UN17288        --> TGACCTCCTTTATTTCCTTAATTTGCTGGTCAAGACCACCAATCATGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TGACCTCCTTTATTTCCTTAATCTGCTGGTCAAGACCACCAATCATGTCA
FY448167       <-- TGACCTCCTTTATTTCCTTAATTTGCTGGTCAAGACCACCAATCATGTCA
FD940878       <-- TGACCTCCTTTATTTCCTTAATTTGCTGGTCAAGACCACCAATCATGTCA
EX773150       <-- TGAACTCCTTTATTTCCTTAATTTGCTGGTCAAGACCACCAATCATGTCA
EX905827       <-- TGACCTCCTTTATTTCCTTAATCTGCTGGTCAAGACCACCAATCATGTCA
FD986389       <-- TGACCTCCTTTATTTCCTTAATTTGCTGGTCAAGACTACCAATCATGTCA
EY948761       <-- TGACCTCCTTTATTTCCTTAATCTGCTGGTCAAGACCACCAATCATGTCA
FD957720       <-- ..................................................
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> TGACCTCCTTTATTTCCTTAATTTGCT.......................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1001   -   1051
UN17288        --> TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
FY448167       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATCAGGTTGACTAGCGGATC
FD940878       <-- TATGTAGAATCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
EX773150       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
EX905827       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
FD986389       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
EY948761       <-- TATGTAGAGTCGGGAACCTTCTCAACCTTCATAAGGTTGACTAGCGGATC
FD957720       <-- ....................CTCAAC-TTCATAAGGTTGACTAGCGGATC
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1051   -   1101
UN17288        --> AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
FY448167       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
FD940878       <-- AACTTTACTCGGGAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
EX773150       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
EX905827       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
FD986389       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
EY948761       <-- AACTTTACTCGGCAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
FD957720       <-- AACTTTACTCGGGAGGACGAGGTGGAGAACATAGCTATCGTTACGAAGAG
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1101   -   1151
UN17288        --> CAACTCTTGTTGATGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- CAACTCTTGTTGACGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
FY448167       <-- CAACTCTTGTCGATGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
FD940878       <-- CAACTCTTGTTGATGGAGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
EX773150       <-- CAACTCTAGTTGATGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
EX905827       <-- CAACTCTTGTTGACGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
FD986389       <-- CAACTCTAGTTGATGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
EY948761       <-- CAACTCTTGTTGACGGTGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
FD957720       <-- CAACTCTTGTTGATGGAGTGATTTTCGTAATGTCTATGCTTTTGTCAATA
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1151   -   1201
UN17288        --> TCAACGACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TCAACGACATACTTCCCCTATGGATGAACCTTAACCAAGACCTTGTTTTT
FY448167       <-- TCAACGACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
FD940878       <-- TCAACAACATACTTCCCCTCTGGATGAACCTTAACCAAGACCT--TTTTT
EX773150       <-- TCAACGACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
EX905827       <-- TCAACGACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
FD986389       <-- TCAACGACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
EY948761       <-- TC................................................
FD957720       <-- TCAACAACATACTTCCCCTCTGGATGAACCTTAACCAAGACCTTGTTTTT
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1201   -   1251
UN17288        --> TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCc......
FY448167       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
FD940878       <-- TCCCATCACTTTGACCACTTCGCCGACATAGGAACCAGGTTCCTGAAGTA
EX773150       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
EX905827       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
FD986389       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
EY948761       <-- ..................................................
FD957720       <-- TCCCATCACTTTGACCACTTCACCGACATAGGAACCAGGTTCCTGAAGTA
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1251   -   1301
UN17288        --> GCTGCAACTCTTCTCTGAGCATTCGTACTCGAGAATTGAGTTCGTTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ACTGCAACTCTTCTCTGAGCATTCGTACTCGAGAGTTGAGTTCATTCCTC
FD940878       <-- ACTGCAACTCTTCTCTGAGCATTCGTACTCGAGAATTGAGTTCGTTCCTC
EX773150       <-- GCTGCAACTCTTCTCTGAGCATTCGTACTCGAGAATTGAGTTCATTCCTC
EX905827       <-- GCTGCAACTCTTCTCTGAGCATTCGTACTCGAGAATTGAGTTCGTTCCTC
FD986389       <-- GCTGCAACTCTTCTCTGAGCATTCGTACTCGAGAGTTGAGTTCATTCCTC
EY948761       <-- ..................................................
FD957720       <-- GCTGCAACTCTTCTCTGAGCATTCGTACTCGAGAATTGAGTTCGTTCCTC
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1301   -   1351
UN17288        --> TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTGGCGGAGCTGGCGCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTGGCGGAGCTGGCGCTG
FD940878       <-- TGAGCTTCAAGGCGATTGAGGTCGTTAGTTTTCTGGCGGAGCTGGCGCTG
EX773150       <-- TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTGGCGGAGCTGGCGCTG
EX905827       <-- TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTTGCGGAGCTGGCGCTG
FD986389       <-- TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTGGCGGAGCTGGCGCTG
EY948761       <-- ..................................................
FD957720       <-- TGAGCTTCAAGGCGATTGAGGTTGTTAGTTTTCTGGCGGAGCTGGCGCTG
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1351   -   1401
UN17288        --> GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
FD940878       <-- GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
EX773150       <-- GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
EX905827       <-- GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
FD986389       <-- GAGCTCATGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
EY948761       <-- ..................................................
FD957720       <-- GAGCTCGTGGATGTGCTGGAGATAGTACTGCTTGAGCCCCTCCCCTTGTT
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1401   -   1451
UN17288        --> TCGCCGCCGCTATCTTGATGTTGCAGGTTTCCTCCACCGCAGTCTCCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- TCGCCGCCGCTATCTTGATGTTGCAGGTTTCCTCCACCGCTGTCTCCGGA
FD940878       <-- TCGCCGCCGCTATCc...................................
EX773150       <-- TCGCCGCCCCTATCTTGATGTTGCAGGTTTCCTCCACCGCTGTCTCCGGA
EX905827       <-- TCGCCGCCCCTATCTTGATGTTGCAGGTTTCCTCCACCGCAGTCTCCGGA
FD986389       <-- TCGCCGCCGCTATCTTGATGTTGCAGGTTTCCTCCACCGCAGTCTCCGGA
EY948761       <-- ..................................................
FD957720       <-- TCGCCGCCCCTATCTTGATGTTGCAGGTTTCCTCCACCGCAGTCTCCGGA
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1451   -   1501
UN17288        --> CGCATCGACTCCACTCCTACGGCAGCCATATCCTCTCCTCAATGATCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- CGCATCGACTCCACTCCTACGGCAGCCATATCCTCTCCTCAATG......
FD940878       <-- ..................................................
EX773150       <-- CGCATCGATTCCACTCCTACGGCAGCCATG----TC-TTCAATGATTGTC
EX905827       <-- CGCATCGACTCCACTCCTACGGCAGCCATATCCTCTCCTCAATGATCGTC
FD986389       <-- CGCATCGACTCCACTCCTACGGCAGCCATATCCTCTCCTCAATGATCGTC
EY948761       <-- ..................................................
FD957720       <-- CGCATCGACTCCACTCCTACGGCAGCCATATCCTCTCCTCAATGATCGTC
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1501   -   1551
UN17288        --> GCGAGTATTGTGATG---TTGATGAAACTCACAAGGAGAAAGAGAGAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ..................................................
FY448167       <-- ..................................................
FD940878       <-- ..................................................
EX773150       <-- GCGGGTATTGTGATGATGTTGATGAGACCCACAAGGAGAAAGAGAGAACA
EX905827       <-- ACGAGTATTGTGATG---TTGATGAAACTCACAAGGAGAAAGAGAGAGCA
FD986389       <-- GCGAGTATTGTGATG---TTGATGAAACTCACAAGGAGAAAGAGAGAGCA
EY948761       <-- ..................................................
FD957720       <-- GCGAGTATTGTGATG---TTGATGAAACTCACAAGGA.............
FD953376       --> ..................................................
FD936656       --> ..................................................
FY441915       --> ..................................................
EV571630       --> ..................................................
EY911755       --> ..................................................

               1551   -   1601
UN17288        --> GTGTTGTTTTCGATCGGAATCTGAAAAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY941149       <-- ................................
FY448167       <-- ................................
FD940878       <-- ................................
EX773150       <-- GTGTTGTTgttttcgatccc............
EX905827       <-- GTGTTGTTTTCGATCGGAATCTGAAAAAAAAA
FD986389       <-- GTGTTGTTTTCGATCGGAATCTcc........
EY948761       <-- ................................
FD957720       <-- ................................
FD953376       --> ................................
FD936656       --> ................................
FY441915       --> ................................
EV571630       --> ................................
EY911755       --> ................................