-2     -     48
UN17299        --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGTTGTCTAGTTAT  Raphanus raphanistrum subsp. landra
FD537789       <-- ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- ...........gCAAGTCTCATTCTCTCTATTCCGCCGCGGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGTTGTCTAGTTAT  Raphanus raphanistrum subsp. landra
EV569605       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGTTGTCTAGTTAT  Raphanus raphanistrum subsp. landra
EX756144       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCGGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGTTGTCTAGTTAT  Raphanus raphanistrum subsp. landra
FD978138       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> ...GGGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGTTGTCTAGTTAT  Raphanus raphanistrum subsp. landra
EV534835       --> ....GGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> ....GGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCGGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> ggaacGCCGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> ......ggGGCACAAGTCTCATTCTCTCTATTCCGCCGCTGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> ...........gCAAGTCTCATTCTCTCTATTCCGCCGCGGTCTAGTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               48     -     98
UN17299        --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. landra
FD537789       <-- TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. landra
EV569605       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. landra
EX756144       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. landra
FD978138       --> TCAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> TCAATTTGCTAGGAGGTCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. landra
EV534835       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> TAAATTTGCTAGGAGATCGAAATGACAACAGTTCCAGGACAGCTGGTGTG  Raphanus raphanistrum subsp. raphanistrum (MS)

               98     -    148
UN17299        --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGATAGAG
FD537789       <-- GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD974444       <-- GGAGATCGTAAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EY902979       <-- GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EY901965       <-- .................................GAAACAGTTCGGTAGAG
FD537792       <-- ..................................................
EV569329       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGATAGAG
EV569605       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EX756144       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EY916453       --> GGAGATCGTAAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD541525       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD541528       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD548375       --> GGAGATCGTAAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD557713       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD978138       --> GGAGATCGTAAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD989566       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EV534835       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
FD540221       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EY905564       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EV536246       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG
EY906922       --> GGAGATCGTGAAGAGAAACAACTGTTTCTTGGTGAAACAGTTCGGTAGAG

               148    -    198
UN17299        --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD537789       <-- GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD974444       <-- GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EY902979       <-- GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EY901965       <-- GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD537792       <-- ..................................................
EV569329       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EV569605       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EX756144       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EY916453       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD541525       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD541528       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD548375       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD557713       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD978138       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD989566       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EV534835       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
FD540221       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EY905564       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EV536246       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC
EY906922       --> GCAATGCTAAGGTTCAGTTCAGCAAGGAGAGCAACAACCTCTGCAACCTC

               198    -    248
UN17299        --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD537789       <-- AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD974444       <-- AACTCTTACAAGCACTCCGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EY902979       <-- AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EY901965       <-- AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD537792       <-- ...................GTTTGGCAAACAAGAAGACCGTGACCATTCA
EV569329       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EV569605       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EX756144       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EY916453       --> AACTCTTACAAGCACTCCGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD541525       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD541528       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD548375       --> AACTCTTACAAGCACTCCGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD557713       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD978138       --> AACTCTTACAAGCACTCCGGTTTGGCAAACAAGAAGACCGTGACCATTCA
FD989566       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EV534835       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGGCCGTGACCATTCA
FD540221       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EY905564       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EV536246       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA
EY906922       --> AACTCTTACAAGCACTCTGGTTTGGCAAACAAGAAGACCGTGACCATTCA

               248    -    298
UN17299        --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- GCCAGCTGACAAGGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. landra
FD537789       <-- GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- GCCAGCTGACAAAGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> GCCAGCTGACAAGGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. landra
EV569605       --> GCCAGCTGACAAGGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. landra
EX756144       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> GCCAGCTGACAAAGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> GCCAGCTGACAAAGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> GCCAGCTGACAAGGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. landra
FD978138       --> GCCAGCTGACAAAGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> GCCAGCTGACAAGGATCAAGGTGTGGTACTTGGAACCACCAAGACCAAGA  Raphanus raphanistrum subsp. landra
EV534835       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> GCCAGCAGACAAGGATCAAGGTGTGGTGCTTGGAACAACCAAAACCAAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               298    -    348
UN17299        --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD537789       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD974444       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EY902979       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EY901965       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD537792       <-- AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EV569329       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EV569605       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EX756144       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EY916453       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCCCAAGAAGGAG
FD541525       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD541528       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD548375       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD557713       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD978138       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD989566       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EV534835       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
FD540221       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EY905564       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EV536246       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG
EY906922       --> AGCAAAACAAGCCAAAGCTCTCTGTTAACAAGTCTGTCCTCAAGAAGGAG

               348    -    398
UN17299        --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- TTCCCGAGAATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. landra
FD537789       <-- TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- TTCCCGAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGGCAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> TTCCCGAGAATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. landra
EV569605       --> TTCCCGAGAATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. landra
EX756144       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> TTCCCGAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> TTCCCGAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> TTCCCGAGAATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. landra
FD978138       --> TTCCCGAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> TTCCCGAGAATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. landra
EV534835       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTTTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGGCAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> TTCCCAAGGATGGCCAAAGCTGTTGCCAACCAGGTTGTGGACAACTACTA  Raphanus raphanistrum subsp. raphanistrum (MS)

               398    -    448
UN17299        --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD537789       <-- CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD974444       <-- CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EY902979       <-- CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EY901965       <-- CAGGCCTGATTTGAAGAAGGCAGCTCTTGCTAGGCTCAGCGTGATCAGCA
FD537792       <-- CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EV569329       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EV569605       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EX756144       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EY916453       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD541525       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD541528       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD548375       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD557713       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD978138       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD989566       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
EV534835       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA
FD540221       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCT..............
EY905564       --> CAGGCCTGATTTGAAGAAGGCAGCTCTTGCTAGGCTCAGCGTGATCAGCA
EV536246       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTCGGCTCAGCGTGATCAGCA
EY906922       --> CAGGCCTGATTTGAAGAAGGCAGCGCTTGCTAGGCTCAGCGTGATCAGCA

               448    -    498
UN17299        --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD537789       <-- AAGGCCTCAGAGTCGCCAAGTCTGTCCCCAAGAGGAGGAACAGACAGGCT
FD974444       <-- AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EY902979       <-- AAGGCCTCAGAGTCGCCAAGTCTGTCCCCAAGAGGAGGAACAGACAGACT
EY901965       <-- AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD537792       <-- AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EV569329       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EV569605       --> AAGGCCTCAGAGTCGC-AAGTCTGGCCCCAAGAGGATGAACAGACAGGCT
EX756144       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EY916453       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD541525       --> AAGGCCTCAGAGTCGCCAAGTCTGTCCCCAAGAGGAGGAACAGACAGGCT
FD541528       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD548375       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAGGAGGAGGAACAGACAGGCT
FD557713       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD978138       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD989566       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EV534835       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
FD540221       --> ..................................................
EY905564       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EV536246       --> AAGGCCTCAGAGTCGCCAAGTCTGGCCCCAAGAGGAGGAACAGACAGGCT
EY906922       --> AAGGCCTCAGAGTCGCCAAGTCTGTCCCCAAGAGGAGGAACAGACAGACT

               498    -    548
UN17299        --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- TGAAGAAT---CCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCAT  Raphanus raphanistrum subsp. landra
FD537789       <-- TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- TGAAGAAT---CCGCCATTGAATGAATATCTTTCTTTTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- TGAAGAATCCTCCGCCATTGAATGAATATCTTTTTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTCTAAATAAGCTCAT  Raphanus raphanistrum subsp. landra
EV569605       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTCTAAATAAGCTCAT  Raphanus raphanistrum subsp. landra
EX756144       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTTTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> TGAAGAATCCgcc.....................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTCTAAATAAGCTCAT  Raphanus raphanistrum subsp. landra
FD978138       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTTTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> TGAAGAATCC---GCCATTGAATGAATATCTTTCTTCTAAATAAGCTCAT  Raphanus raphanistrum subsp. landra
EV534835       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> TGAAGAATCCTCCGCCATTGAATGAATATCTTTCTTCTAAATAAGCTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               548    -    598
UN17299        --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- TTTGAGAGTTTCAGACAGTGTTTGTAGGTTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. landra
FD537789       <-- TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- TTTGAGAGCTTCAGACAGTGTTTGTAGGTTAAAGAGTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> TTTGAGAGTTTCAGACAGTGTTTGTAGGTTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. landra
EV569605       --> TTTGAGAGTTTCAGACAGTGTTTGTAGGTTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. landra
EX756144       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> TTTGAGAGTTTCAGACAGTGTTTGT.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> TTTGAGAGTTTCAGACAGTGTTTGTAGGTTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. landra
FD978138       --> TTTGAGAGCTTCAGACAGTGTTTGTAGGTTAAAGAGTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> TTTGAGAGTTTCAGACAGTGTTTGTAGGTTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. landra
EV534835       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> TTTGAGAGTTTCAGACTGTGTTTGT.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGATTATTCCTGAACAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> TTTGAGAGTTTCAGACTGTGTTTGTAGGCTAAAGAT..............  Raphanus raphanistrum subsp. raphanistrum (MS)

               598    -    648
UN17299        --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- TAA...............................................  Raphanus raphanistrum subsp. landra
FD537789       <-- TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
FD974444       <-- TAAAAGTTTTGTTTGAACCACCTCCCTTGTCATCCTTCTATTCACAAAat  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902979       <-- TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EY901965       <-- TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
FD537792       <-- TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EV569329       --> TAA...............................................  Raphanus raphanistrum subsp. landra
EV569605       --> TAAAAGTTTTGTTTGAACCACCTCCCTTGTCATCCTTCTATTCACAAAAT  Raphanus raphanistrum subsp. landra
EX756144       --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EY916453       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541525       --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541528       --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
FD548375       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD557713       --> TAAAAGTTTTGTTTGAACCACCTCCCTTGTCATCCTTCTAT.........  Raphanus raphanistrum subsp. landra
FD978138       --> TAAAAGTTTTGTTTGAACCACCTCCCTTGTCATCCTTCTATTCACAAAat  Raphanus raphanistrum subsp. raphanistrum (NY)
FD989566       --> TAAAATTTTTGTTTGAACCACCTCCCTTGTCATCCTTCTATTCACAAAAT  Raphanus raphanistrum subsp. landra
EV534835       --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540221       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY905564       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV536246       --> TAAAAGTTTTGTTTGAACCACCAACCTTGTCATCCTTCTATTCACAAA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906922       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               648    -    698
UN17299        --> GAAGTTAAAACTATTATTATACTGCCATCGTTTTAACCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573896       <-- ........................................
FD537789       <-- GA......................................
FD974444       <-- ga......................................
EY902979       <-- GA......................................
EY901965       <-- GAAGTTAAAACTATTATTATACTGCCATCGTTTTAACCGC
FD537792       <-- GA......................................
EV569329       --> ........................................
EV569605       --> GAAGTTAA................................
EX756144       --> GAAGTTA.................................
EY916453       --> ........................................
FD541525       --> GA......................................
FD541528       --> GA......................................
FD548375       --> ........................................
FD557713       --> ........................................
FD978138       --> ga......................................
FD989566       --> GAAGTTAAAACTATTATTATACgaaaaaaa..........
EV534835       --> GAAGTT..................................
FD540221       --> ........................................
EY905564       --> ........................................
EV536246       --> GA......................................
EY906922       --> ........................................