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Alignment for radish unigene UN17328

               -3     -     47
UN17328        --> ....ATATTCTTCTTTGCATATTCTTCTTCCTCCTCTCACAACCAGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..ggATATTCTTCTTTGCATATTCTTCTTCCTCCTCTCACAACCAGAAAA
FD570255       --> gggcATATTCTTCTTTGCATATTCTTCTTCCTCCTCTCACAACCAGAAAA
FD938453       --> ................agggATTCTTCTTCTTCCTCTCACTACCAAAAAA
EV526703       --> ..................................TCTCACAACCAGAAAA
EX772433       --> ..................................TCTCACTACCAAAAAA
FD974081       --> ..................................TCTCACAACCAGAAAA
FD973530       --> ...................................CTCACTACCAATAAA
FD540071       --> .........................................ggCAGAAAA
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               47     -     97
UN17328        --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGGCCCGCGAAAGTGACGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGGCCCGCGAAAGTGACGAAA
FD570255       --> GAAAAAAAACAAGATGGTTCTAAGTCGAGCGGCCCGCGAAAGTGACGAAA
FD938453       --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGTCCCGCGAAAGTGACGAAA
EV526703       --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGGCCCGCGAA-GTGACGAAA
EX772433       --> GAAAAAA--CATGATGGTTCTAAGTCGAGTGGCCCGCGAAAGTGACGAAA
FD974081       --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGGCCCGCGAAAGTGACGAAA
FD973530       --> GAAAAAA--CAAGATGGTTCTAAGTCGAGCGGCCACCGGAAGTGACGAAA
FD540071       --> GAAAAAAA-CAAGATGGTTCTAAGTCGAGCGGCCCGCGAAAGTGACGAAA
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               97     -    147
UN17328        --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGCACTTCACTGCCCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGTACTTCACTGCCCAAG
FD570255       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGTACTTCACTGCCCAAG
FD938453       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGCACTTCACTGCCCAAG
EV526703       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGTACTTCACTGCCCAAG
EX772433       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGCACTTCGCTGCCCAAG
FD974081       --> ATGTTTGCTCGGCGTTCGGATCTCGCTATGTCCGCACTTCTTTGCCCAAG
FD973530       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGCACTTCACTGCCCAAG
FD540071       --> ATGTTTGCTCGACGTTCGGATCTCGCTATGTCCGCACTTCTTTGCCCAAG
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               147    -    197
UN17328        --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCTTATCAGATCAT
FD570255       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
FD938453       --> TATGAGATTGGTGAGGGCTCGATACCGAAAGAGGCTGCGTATCAGATCAT
EV526703       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
EX772433       --> TATGAGATTGGTGAGGGCTCGATACCGAAAGAGGCTGCGTATCAGATCAT
FD974081       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
FD973530       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
FD540071       --> TATGAGATTGGTGAGGGCTCGATACCGAAGGAGGCTGCGTATCAGATCAT
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               197    -    247
UN17328        --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> AAAAGATGAGTTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
FD570255       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
FD938453       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCTT
EV526703       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
EX772433       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
FD974081       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
FD973530       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
FD540071       --> AAAAGATGAGCTGATGCTTGATGGTAACCCGAGGCTTAACCTGGCTTCCT
EY941498       --> .............................gGAGGCTTAACCTGGCTTCCT
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               247    -    297
UN17328        --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
FD570255       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
FD938453       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATCATGGAATCT
EV526703       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
EX772433       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
FD974081       --> TTGTAACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
FD973530       --> TTGTGACGACATGGATGGAGC-TGAGTGTGACAAACTCATTATGGAATCT
FD540071       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
EY941498       --> TTGTGACGACATGGATGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
EY916692       --> ...............gGGAGCCTGAGTGTGACAAACTCATTATGGAATCT
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               297    -    347
UN17328        --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACTACCGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACCACCGAGCT
FD570255       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACCACCGAGCT
FD938453       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACTACCGAGCT
EV526703       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACCACCGAGCT
EX772433       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACTACCGAGCT
FD974081       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACTACCGAGCT
FD973530       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACCACCGAGCT
FD540071       --> ATCAACAAGAACTACGTCGACATGGACGAGTACCCTGTCACTACCGAGCT
EY941498       --> ATCAACAAGAACTACGTCGACGTGGACGAGCATCCTGTCACCACCGAGCT
EY916692       --> ATCAACAAGAACTACGTCGACATGGACGAGTATCCTGTCACTACCGAGCT
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               347    -    397
UN17328        --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCGCCGCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD564357       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCACCACTTG  Raphanus sativus var. oleiformis
FD570255       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCACCACTTG  Raphanus sativus cv Early Scarlet Globe
FD938453       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCGCCGCTTG  Raphanus sativus var. oleiformis
EV526703       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCACCACTTG  Raphanus raphanistrum subsp. maritimus
EX772433       --> CCAGAACCGATGTGTGAACATGATAGCTCGGCTGTTCAATGCGCCGCTTG  Raphanus raphanistrum subsp. landra
FD974081       --> CCAGAACCGATGTGTAAACATGATAGCTCGACTGTTCAATGCGCCGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973530       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCGCCGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540071       --> CCAGAACCGATGTGTAAACATGATAGCTCGACTGTTCAATGCGCCGCTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941498       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCACCACTTG  Raphanus sativus cv Early Scarlet Globe
EY916692       --> CCAGAACCGATGTGTAAACATGATAGCTCGGCTGTTCAATGCGCCGCTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938471       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD970064       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551302       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772264       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764905       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD576334       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD542414       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               397    -    447
UN17328        --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
FD570255       --> GGGAAACTGAGACCGCCATGGGAGTGGGCACTGTTGGGTCTTCGGAAGTC
FD938453       --> GG-AAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
EV526703       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
EX772433       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
FD974081       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
FD973530       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
FD540071       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
EY941498       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
EY916692       --> GGGAAACTGAGACCGCCATGGGAGTAGGCACTGTTGGGTCTTCGGAAGCC
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               447    -    497
UN17328        --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
FD570255       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
FD938453       --> ATCATGTTAGCCGGACTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
EV526703       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
EX772433       --> ATCATGTTAGCCGGACTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
FD974081       --> ATCATGT-AGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
FD973530       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
FD540071       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
EY941498       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
EY916692       --> ATCATGTTAGCCGGATTAGCCTTCAAAAGGAATTGGCAGAACAAACGCAA
EY938471       --> ......................gCAAAAGGAATTGGCAGAACAAACGCAA
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               497    -    547
UN17328        --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTG...............
FD570255       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
FD938453       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
EV526703       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
EX772433       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
FD974081       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACAGGAGCCAATG
FD973530       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
FD540071       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACAGGAGCCAATG
EY941498       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
EY916692       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACTGGAGCCAATG
EY938471       --> AGCTGAGGGTAAACCCTATGACAAACCCAACATTGTCACCGGAGCCAATG
FD970064       --> ..agGAGGGTAAACCCTATGACAAACCCAACATTGTCACAGGAGCCAATG
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               547    -    597
UN17328        --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
FD938453       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EV526703       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EX772433       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
FD974081       --> TTCAAGTGTGCTGGG...................................
FD973530       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
FD540071       --> TTCAAGTGTGCTGGGAGAA-TTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EY941498       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EY916692       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EY938471       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
FD970064       --> TTCAAGTGTGCTGGGAGAAATTCGCTAGGTACTTCGAGGTGGAGCTAAAA
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               597    -    647
UN17328        --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> GAAGTGGAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
FD938453       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EV526703       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EX772433       --> GAAGTGAAGCTTAGTGAAG-TTACTACGTGATGGATCCAGATAAAGCAGC
FD974081       --> ..................................................
FD973530       --> GAAGTGAAGCTTAGTGAAG-TTACTACGTGATGGATCCAGATAAAGCAGC
FD540071       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EY941498       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EY916692       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EY938471       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
FD970064       --> GAAGTGAAGCTTAGTGAAGGTTACTACGTGATGGATCCAGATAAAGCAGC
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               647    -    697
UN17328        --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGTTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD564357       --> ..................................................  Raphanus sativus var. oleiformis
FD570255       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGGTCCA  Raphanus sativus cv Early Scarlet Globe
FD938453       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATA..........  Raphanus sativus var. oleiformis
EV526703       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGGTCCA  Raphanus raphanistrum subsp. maritimus
EX772433       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGTTCCA  Raphanus raphanistrum subsp. landra
FD974081       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973530       --> TGAAATGGTAGACGAGA-CACAATCTGTGTTGCTGCCATACTTGGTTC-A  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540071       --> TGAAATGGTAGACGAGAACATAATCTGTGTTGCTGCCATACTTGGTTC-A  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941498       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGGTCCA  Raphanus sativus cv Early Scarlet Globe
EY916692       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938471       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGGTCCA  Raphanus sativus cv Early Scarlet Globe
FD970064       --> TGAAATGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGTTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551302       --> ....gTGGTAGACGAGAACACAATCTGTGTTGCTGCCATACTTGGTTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772264       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764905       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD576334       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD542414       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               697    -    747
UN17328        --> CACTCAACGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD564357       --> ..................................................  Raphanus sativus var. oleiformis
FD570255       --> CACTCAATGGTGAGTT..................................  Raphanus sativus cv Early Scarlet Globe
FD938453       --> ..................................................  Raphanus sativus var. oleiformis
EV526703       --> CACTCAATGGTGAGTTCGAAGACGTCAAGAGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. maritimus
EX772433       --> CACTCAACGGTGAATTCGAAGACGTCAAGCGCCTTAATGACTT.......  Raphanus raphanistrum subsp. landra
FD974081       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD973530       --> CACTCAACG-TGAGTTCGAAGACGTCA-GCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD540071       --> CACTCAACGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY941498       --> CACTCAATGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus sativus cv Early Scarlet Globe
EY916692       --> CACTCAACGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY938471       --> CACTCAATGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus sativus cv Early Scarlet Globe
FD970064       --> CACTCAACGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551302       --> CACTCAACGGTGAGTTCGAAGACGTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX772264       --> .......................GTCAAGCGCCTTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. landra
EX764905       --> .................................gTAATGACTTGCTGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD576334       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD542414       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               747    -    797
UN17328        --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> AAGAAAA-CGAAGAGACTGGCTGGAACACCCCAATCCACGTTGACGCAGC
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> Agaaa.............................................
FD540071       --> AAAAAAA...........................................
EY941498       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
EY916692       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
EY938471       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
FD970064       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCGATCCACGTTGACGCAGC
EV551302       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCGATCCACGTTGACGCAGC
EX772264       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
EX764905       --> AAGAAAAACGAAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
FD576334       --> ..........gAGAGACTGGCTGGAACACTCCAATCCACGTTGACGCAGC
FD542414       --> ..................................................

               797    -    847
UN17328        --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> AAG...............................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> AAGTGGAGGCTTCATAACTCCATTTATTTACCCTGACTTGGAATGGGACT
EY916692       --> AAGTGGAGGCTTCATAGCTCCGTTTATTTACCCTGACTTGGAATGGGACT
EY938471       --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACT
FD970064       --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACT
EV551302       --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACT
EX772264       --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACC
EX764905       --> AAGTGGAGGCTTCATAGCTCCGTTTATTTACCCTGGCTTGGAATGGGACT
FD576334       --> AAGTGGAGGCTTCATAGCTCCATTTATTTACCCTGACTTGGAATGGGACT
FD542414       --> ............gATAGCTCCGTTTATTTACCCTGACTTGGAATG-TACT

               847    -    897
UN17328        --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGC
EY916692       --> TTAG-CTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCACAAGTATGGG
EY938471       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGC
FD970064       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGG
EV551302       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGG
EX772264       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGG
EX764905       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCACAAGTATGGG
FD576334       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGC
FD542414       --> TTAGGCTTCCTTTGGTGAAGAGTATCAATGTGAGTGGTCATAAGTATGGG

               897    -    947
UN17328        --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ..................................................
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAG-ATTT
EY916692       --> CTGGTCTATGCGGGTAT-GGCTGGGTCGTGTGGAGGACACAACAG-ATTT
EY938471       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
FD970064       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
EV551302       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
EX772264       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
EX764905       --> CTGGTCTATGCGGGTATTGGCTGGGTCGTGTGGAGGACACAACGGGATTT
FD576334       --> CTGGTCTATGCTGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT
FD542414       --> CTGGTCTATGCGGGTATTGGCTGGGTCGTGTGGAGGACACAACAGGATTT

               947    -    997
UN17328        --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ......TGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCA-CCCA
EY916692       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
EY938471       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
FD970064       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
EV551302       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCACCCCA
EX772264       --> GCCTGATGAGCTCATCTTTCATATAAACTATCTTGGTGCTGATCAACCCA
EX764905       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
FD576334       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA
FD542414       --> GCCTGATGAGCTCATCTTTCATATCAACTATCTTGGTGCTGATCAACCCA

               997    -   1047
UN17328        --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> CTTTCACTC.........................................
EY916692       --> CTTTCACTCTCA-TTTCTC-AA-GGATCGAGC-AAA-TA-TGCTC-ATAC
EY938471       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
FD970064       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
EV551302       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
EX772264       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
EX764905       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
FD576334       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC
FD542414       --> CTTTCACTCTCAATTTCTCCAAGGGATCGAGCCAAATTATTGCTCAATAC

               1047   -   1097
UN17328        --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> TATCAGCTCAT.......................................
EY938471       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
FD970064       --> TATCAGCTCATTCGTCTTGGCTTCGGGGGCTACAAGAACGTGATGGAGAA
EV551302       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
EX772264       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGGGAA
EX764905       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
FD576334       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA
FD542414       --> TATCAGCTCATTCGTCTTGGCTTCGAGGGCTACAAGAACGTGATGGAGAA

               1097   -   1147
UN17328        --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- CTGCAGAGAGAACATGGTGGTTCTAAGAAAAGGGATAGAGAAAACAGAGC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
FD970064       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
EV551302       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
EX772264       --> CTGCAGGGAGAGCATGGTGGTTCTGAGAGAAGGGATCGAGAAAACAGAGC
EX764905       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
FD576334       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC
FD542414       --> CTGCAGAGAGAACATGGTGGTTCTAAGAGAAGGGATAGAGAAAACAGAGC

               1147   -   1197
UN17328        --> GTTTCAACATAGTCTCAAAGGAGATAGGAGTGCCACTCGTTGCCTTCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- GTTTCAACATAGTCTCAAAGGAGATAGGAGTACCACTCGTTGCCTTCTCT
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> GTTTCAACATAGTCTC..................................
FD970064       --> GTTTCAACATAGTCTCAAA...............................
EV551302       --> GTTTCAACATAGTCTCAAAGGAGGTAGGAGTGCCACTCGTAGCCTTCTCT
EX772264       --> GTTTCAACATAGTCTCAAAGGAGGTAGGAGTGCCACTGGTAGCCTTCTCT
EX764905       --> GTTTCAACATAGTCTCAAAGGAGATAGGAGTACCACTCGTTGCCTTCTCT
FD576334       --> GTTTCAACATAGTCTCAAAGGAGATAGGAGTACCACTCGTTGCCTTCTCT
FD542414       --> GTTTCAACATAGTCTCAAAGGAGATAGGAGTGCCACTCGTAGCCTTCTCT

               1197   -   1247
UN17328        --> CTCAAGGACCACAGTTTCCACAACGAGTTCGAGATCTCAGAGATGCTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- CTCAAGGACCACAGTTTCCACAACGAGTTCGAGATCTCAGAGATGCTACG
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> CTCAAGGACCACAGTTTCCACAACGAGTTCGAGATCTCGGAGATGCTACG
EX772264       --> CTCAAGGACCACAGTTTCCACAACGAGTTCGAGATCTCAGAGATGCTACG
EX764905       --> CTCAAGGACCACAGTTTCCACAACGAATTCGAGATCTCAGAGATGCTACG
FD576334       --> CTCAAGGACCACAGTTTCCACAACGAGTTCGAGATCTCAGAGATGCTACG
FD542414       --> CTCAAGGATCACAGTTTCCACAACGAGTTCGAGATCTCAGAGATGCT-CG

               1247   -   1297
UN17328        --> CCGTTTCGGCTGGATTGTCCCGGCTTACACCATGCCTGCGGATGCGCAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- CCGCTTTGGCTGGATTGTCCCGGCTTATACCATGCCTGCGGATGCGCAAC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> CCGTTTCGGCTGGATTGTACCGGCTTACACCATGCCTGCGGATGCGCAAC
EX772264       --> CCGTTTTGGCTGGATTGTCCCGGCTTACACCATGCCTGCGGATGCGCA-C
EX764905       --> CCGTTTCGGCTGGATCGTCCCGGCTTACACCATGCCTGCGGATGCGCAAC
FD576334       --> CCGCTTTGGCTGGATTGTCCCGGCTTACACCATGCCTGCGGATGCGCAAC
FD542414       --> CCGTTTCGGATGGATTGTCCCGGCTTACACCATGCCTGCGGATGCGCAAC

               1297   -   1347
UN17328        --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
EX772264       --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
EX764905       --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
FD576334       --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT
FD542414       --> ACATCACGGTTCTCCGTGTTGTCATAAGGGAAGATTTCTCAAGAACACTT

               1347   -   1397
UN17328        --> GCGGAGAGACTTGTGGCTGATATTGTGAAGGTGCTTCACGAGCTTGACAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- GCGGAGAGACTTGTGGCTGATATCGTGAAGGTGCTTCACGAGCTTGACAC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> GCGGAGAGACTTGTGGCTGATATTGTGAAGGTGCTTCACGAGCTCGACAC
EX772264       --> GCGGAGAGACTTGTGGCTGATATTGTGAAG-TGCTTCACGAGCTTGACAC
EX764905       --> GCGGAGAGACTTGTGGCTGATATTGTGAAG-TGCTTCACGAGCTTGACAC
FD576334       --> GCGGAGAGACTTGTGGCTGATATCGTGAGGGTGCTTCACGAGCTTGACAC
FD542414       --> GCGGAGAGACTTGTGGCTGATATTGTGAAGGTGCTTCACGAGCTTGACAC

               1397   -   1447
UN17328        --> CTTGCCATCCAAGATATCCAAGAAGATGGGAGCAGAGGATTTCGGAAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- CTTGCCATCCAAGATATCCAAGAAGATGGGGGCAGAGGATTTCGGAAATG
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> CTTGCCATCCAAGATATCCAAGAAGATGGGAGCAGAGGAT..........
EX772264       --> CTTGCCTTCCAgat....................................
EX764905       --> CTTGCCATCCAAGATATCCAAGA-GATGGGAGCAG...............
FD576334       --> CTTGCCATCCAAGATATCCAAGAAGATGGGAGCAGAGGATTTCGGAAATG
FD542414       --> CTTGCCTTCCAAGATATCCAAGAAGATGGGAGCAGAGGATTTCGGAAATG

               1447   -   1497
UN17328        --> TGAAAGGGA-GAAG-TGGAAAGGGACAT-CTGATGGAAGTCATTGTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- TGAAAGGGAAGAAGGTGGAAAGGGACATTCTGATGGAAGTCATTGTTGGA
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> TGAAAGGGA-GAAG-TGGAAAGGGACAT-CTGATGGAAGTCATTGTTGGA
FD542414       --> TGAAAGGGAa........................................

               1497   -   1547
UN17328        --> TGGAGGA-GTT-GTGAA-GAGAG--AGA-GATGAATG-TGTGTGTTAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- TGGAGGAAGTTTGTGAAAGAGAGGAAGAAGATGAATGGTGTGTGTTAATC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> TGGAGGA-GTT-GTGAA-GAGAG--AGA-GATGAATG-TGTGTGT-AATC
FD542414       --> ..................................................

               1547   -   1597
UN17328        --> TGAAGTGTCTTCTGTTTGTGATTGAATGTATTAAATGTCATCTAATAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- TGAAGTGTCTTCTGTTTGTGATTGAATGTATTAAATGTCATCTAATAAAA
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> TGAg..............................................
FD542414       --> ..................................................

               1597   -   1647
UN17328        --> GAAGAGGTATGTGTGTGTGTGAGAACTTGGAGTTTGATGAAGAGTTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- GAAGAGGTATGTGTGTGTGTGAGAACTTGGAGTTTGATGAAGAGTTGTGT
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               1647   -   1697
UN17328        --> GTCTGGTATCCCATTTGAGACAATAATTGATTCTGGAATCTATTGTATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV531113       <-- GTCTGGTATCCCATTTGAGACAATAATTGATTCTGGAATCTATTGTATGC
FD564357       --> ..................................................
FD570255       --> ..................................................
FD938453       --> ..................................................
EV526703       --> ..................................................
EX772433       --> ..................................................
FD974081       --> ..................................................
FD973530       --> ..................................................
FD540071       --> ..................................................
EY941498       --> ..................................................
EY916692       --> ..................................................
EY938471       --> ..................................................
FD970064       --> ..................................................
EV551302       --> ..................................................
EX772264       --> ..................................................
EX764905       --> ..................................................
FD576334       --> ..................................................
FD542414       --> ..................................................

               1697   -   1747
UN17328        --> TTGAAAC..
                   ~~~~~~~~~
EV531113       <-- TTGAAACgc
FD564357       --> .........
FD570255       --> .........
FD938453       --> .........
EV526703       --> .........
EX772433       --> .........
FD974081       --> .........
FD973530       --> .........
FD540071       --> .........
EY941498       --> .........
EY916692       --> .........
EY938471       --> .........
FD970064       --> .........
EV551302       --> .........
EX772264       --> .........
EX764905       --> .........
FD576334       --> .........
FD542414       --> .........