RadishBase

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Alignment for radish unigene UN17364

               1      -     51
UN17364        --> AGCATGGAAGATCCTTAAATAAGATAAGGAGAGCGTTTTATTATTTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- ..................................................  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569389       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW715532       <-- ..................................................  Raphanus sativus var. oleiformis
EX754057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD569697       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> AGCATGGAAGATCCTTAAATAAGATAAGGAGAGCATTTTATTATTTTTAT  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> AGCATGGAAGATCCTTAAATAAGATAAGGAGAGCATTTTATTATTTTTAT  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> .....GGAAGATCCTTAAATAAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ....tgaAAGATCCTTAA-TAAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv GSK3-1
FY441244       --> ........AGATCCTTAA-TAAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv GSK3-1
FY441585       --> .........GATCCTTAA-TAAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv GSK3-1
EV573946       --> ..........ATCCTTAAACAAGATTAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. landra
FD529829       --> ..........ATCCTTAAACAAGATTAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. maritimus
EV531428       --> ............CCTTAAACAAGATTAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. maritimus
EY901499       --> ............agTTAAACAAGATTAGGAAAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> .................AATAAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ....................AAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ....................AAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ....................AAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ....................gAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ....................gAGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ....................ggGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ....................agGATAAGGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ........................TAAGGAGAGCGTTT-ATTATTTTTAT  Raphanus sativus cv GSK3-1
FY445813       --> ..........................AGGAGAGCGTTTTAT-ATTTTTAT  Raphanus sativus cv GSK3-1
FD975673       --> ...........................GGAGAGCGTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ...........................GGAGAGCGTTTTATTATTTTTAT  Raphanus sativus cv GSK3-1
EX761358       --> ..................................GTTTTATTATTTTTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ...........................................TTTTTAT  Raphanus sativus var. oleiformis
FY443133       --> ...........................................TTTTTAT  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               51     -    101
UN17364        --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................
EV527107       <-- ..................................................
FY442756       <-- ..................................................
EY904948       <-- ..................................................
FY443982       <-- ..................................................
EV569389       <-- ..................................................
EW715532       <-- ..................................................
EX754057       <-- ..................................................
EY921327       <-- ..................................................
FD569697       <-- ..................................................
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EY945043       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EX758788       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY442905       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY441244       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY441585       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EV573946       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FD529829       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EV531428       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EY901499       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EY902525       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EX758465       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EX899945       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EX906913       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FD573852       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FD976575       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EW730764       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FD976849       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY445712       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY445813       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FD975673       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY446156       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EX761358       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EY926913       --> CAAACTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
FY443133       --> CAAACTTACATATTAGTT-GCCACACATATTGAGCCAACTATTATTACAT
FD984455       --> ....CTTACATATTAGTT-GCCACATATATTGAGCCAACTATTATTACAT
EW720102       --> ............TTAGTTTGCCACATATATTGAGCCAACTATTATTACAT
EX891511       --> ..................................................

               101    -    151
UN17364        --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ...............................................TGG
EV527107       <-- ..................................................
FY442756       <-- ..................................................
EY904948       <-- ..................................................
FY443982       <-- ..................................................
EV569389       <-- ..................................................
EW715532       <-- ..................................................
EX754057       <-- ..................................................
EY921327       <-- ..................................................
FD569697       <-- ..................................................
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EY945043       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EX758788       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGAAAAGAGTTGG
FY442905       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY441244       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY441585       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EV573946       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FD529829       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EV531428       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAAAGAGTTGG
EY901499       --> AGAGCCGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EY902525       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGAAAAGAGTTGG
EX758465       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGAAAAGAGTTGG
EX899945       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAAAGTTGG
EX906913       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FD573852       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FD976575       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EW730764       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAAAGTTGG
FD976849       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY445712       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY445813       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FD975673       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY446156       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EX761358       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAAAAAGTTGG
EY926913       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FY443133       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
FD984455       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EW720102       --> AGAGCTGACAAAGTCGACGATTTCAACAACATCATGGAGCAGAGAGTTGG
EX891511       --> ..................................................

               151    -    201
UN17364        --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- ..................................................  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569389       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW715532       <-- ..................................................  Raphanus sativus var. oleiformis
EX754057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD569697       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> AGTTCACCACTCTACAGTTTTGTCTGATCTGTCCTTGAGATCCCGTGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
FY441244       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
FY441585       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
EV573946       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. landra
FD529829       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. maritimus
EV531428       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. maritimus
EY901499       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> AGTTCACCACTCTACAGTTTTGTCTGATCTGTCCTTGAGATCCCGTGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> AGTTCACCACTCTACAGTTTTGTCTGATCTGTCCTTGAGATCCCGTGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGGGATCCTGTGAGA  Raphanus sativus cv Early Scarlet Globe
EX906913       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv Early Scarlet Globe
FD976575       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATTCTGTGAGA  Raphanus sativus cv Early Scarlet Globe
FD976849       --> AGTTCGCCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
FY445813       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
FD975673       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
EX761358       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAAATCCTGTGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus var. oleiformis
FY443133       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus cv GSK3-1
FD984455       --> AGTTCACCACCCTACAGTTTTGTCTGATCTGTCCCTGAGATCCTGTGAGA  Raphanus raphanistrum subsp. landra
EW720102       --> AGTTCACCACCCTACAGTTTCGTCTGATCTGTCCTTGAGATCCTGTGAGA  Raphanus sativus var. oleiformis
EX891511       --> ......CCACCCTACAGTTTCGTCTGAACTGTCCTTGAGATCCTGTGAGA  Raphanus sativus var. oleiformis

               201    -    251
UN17364        --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. maritimus
EV527107       <-- .....AATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. maritimus
FY442756       <-- ..................................................  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569389       <-- ..................................................  Raphanus raphanistrum subsp. landra
EW715532       <-- ..................................................  Raphanus sativus var. oleiformis
EX754057       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD569697       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> GGGGTAATGTTTCCCATTCTATCCATCGCCGTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
FY441244       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
FY441585       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
EV573946       --> GGGGTAATGTTTCCCATTCTACCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. landra
FD529829       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. maritimus
EV531428       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAAAA  Raphanus raphanistrum subsp. maritimus
EY901499       --> GGGGTAATGTTTCCCATTCTATCCATCGCCGTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> GGGGTAATGTTTCCCATTCTATCCATCGCCGTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> GGGGTAATGTTTCCCATTCTATCCATCGCCGTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Early Scarlet Globe
EX906913       --> GGGATAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Early Scarlet Globe
FD976575       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv Early Scarlet Globe
FD976849       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
FY445813       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
FD975673       --> GGGGTAATGTTTCCTATTCTATCCATCGCCTTTATAAACGCATTGAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
EX761358       --> GGGGTAATGTTTCCCATTCTATCCATCGCCGTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus var. oleiformis
FY443133       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus cv GSK3-1
FD984455       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus raphanistrum subsp. landra
EW720102       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus var. oleiformis
EX891511       --> GGGGTAATGTTTCCCATTCTATCCATCGCCTTTATAAACGCATTGAAGAA  Raphanus sativus var. oleiformis

               251    -    301
UN17364        --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EV527107       <-- CTTTTGTATGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY442756       <-- ......................................TAGTATCAGTGG
EY904948       <-- ..................................................
FY443982       <-- ..................................................
EV569389       <-- ..................................................
EW715532       <-- ..................................................
EX754057       <-- ..................................................
EY921327       <-- ..................................................
FD569697       <-- ..................................................
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EY945043       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EX758788       --> CTTTTGTGTCCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY442905       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY441244       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY441585       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EV573946       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD529829       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EV531428       --> CTTTTGTATGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EY901499       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EY902525       --> CTTTTGTGTCCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EX758465       --> CTTTTGTGTCCCATCAGCGTATTCTCTCACCAAGGGGCTAGTATCAGTGG
EX899945       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EX906913       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD573852       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD976575       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EW730764       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD976849       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY445712       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY445813       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD975673       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGA
FY446156       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EX761358       --> CTTTTGTGTGCCGTCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EY926913       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FY443133       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
FD984455       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EW720102       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG
EX891511       --> CTTTTGTGTGCCATCAGCGTATTCTCTCACCAAGGGGATAGTATCAGTGG

               301    -    351
UN17364        --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EV527107       <-- CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY442756       <-- CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EY904948       <-- .......GCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTC-TTTGAGC
FY443982       <-- .............GAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EV569389       <-- ..............................................GAGC
EW715532       <-- ..............................................GAGC
EX754057       <-- ..................................................
EY921327       <-- ..................................................
FD569697       <-- ..................................................
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EY945043       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX758788       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY442905       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY441244       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY441585       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EV573946       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTAGAGC
FD529829       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EV531428       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EY901499       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EY902525       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX758465       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX899945       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX906913       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FD573852       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAAC
FD976575       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EW730764       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FD976849       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY445712       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY445813       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FD975673       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY446156       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX761358       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EY926913       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FY443133       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
FD984455       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EW720102       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTTGGATAAGTCCTTTGAGC
EX891511       --> CATTGGGGCTTGAGAACAGCTCTTGATCGGTTAGGATAAGTCCTTTGAGC

               351    -    401
UN17364        --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EV527107       <-- TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY442756       <-- TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EY904948       <-- TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY443982       <-- TCTGTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EV569389       <-- TCTTTCAGATTCACATAATATTTGT-GTCAAAAACTGTCGGTGTACGTAG
EW715532       <-- TCTTTCAGATTCACATAATATTTGT-GTCAAAA-CTGTCGGTGTACGTAG
EX754057       <-- .............................cAAAACTGTCGGTGTACGTAG
EY921327       <-- .............................cAAAACTGTCGGTGTACGTAG
FD569697       <-- ........................................GTGTACGTAG
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EY945043       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX758788       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY442905       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY441244       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY441585       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EV573946       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FD529829       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EV531428       --> TCTTTCAAATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EY901499       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EY902525       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX758465       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX899945       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX906913       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FD573852       --> TCTTT.............................................
FD976575       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EW730764       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTAAGTAG
FD976849       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY445712       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY445813       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FD975673       --> TCTTTCAAATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY446156       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX761358       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EY926913       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FY443133       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
FD984455       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACCGTCGGTGTACGTAG
EW720102       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG
EX891511       --> TCTTTCAGATTCACATAATATTTGTTGTCAAAAACTGTCGGTGTACGTAG

               401    -    451
UN17364        --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ATCAAAATTCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EV527107       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY442756       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EY904948       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY443982       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EV569389       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EW715532       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX754057       <-- ATCAAA-T-CACTAGAACGCTCTG-TTA-CA-TACGAGGGCATAGTCCAC
EY921327       <-- ATCAAA-TCCACTAGAACGCTCTG-TTACCAT-ACGAGGGCATAGTCCAC
FD569697       <-- ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD980726       <-- ..................................................
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EY945043       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX758788       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY442905       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY441244       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY441585       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EV573946       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD529829       --> ATCAAAATTCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EV531428       --> ATCAAAATCCACTAAAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EY901499       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EY902525       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX758465       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX899945       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX906913       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD573852       --> ..................................................
FD976575       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EW730764       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD976849       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY445712       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY445813       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD975673       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY446156       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX761358       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EY926913       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FY443133       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
FD984455       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EW720102       --> ATCAAAATCCACTAGAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC
EX891511       --> AACAAAATCCACTAAAACGCTCTGGTTACCATTACGAGGGCATAGTCCAC

               451    -    501
UN17364        --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. maritimus
EV527107       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. maritimus
FY442756       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
EY904948       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
EV569389       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. landra
EW715532       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus var. oleiformis
EX754057       <-- GAAGCGTCTG-AGATAAGTAGTGT-GAGGGTAGG-TCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GAAGCGTCTGGAGATAAGTAGTGT-GAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. landra
FD569697       <-- GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> GAAGCGTCTGGAGATAAGCAGTGTTGAGGGTAGGGTCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
FY441244       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
FY441585       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
EV573946       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. landra
FD529829       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. maritimus
EV531428       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. maritimus
EY901499       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCAGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Early Scarlet Globe
EX906913       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> GAAGCGTCTGGAGATAGGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv Early Scarlet Globe
FD976849       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
FY445813       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
FD975673       --> GAAGCGTCTGGAGATGAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
EX761358       --> GAAGCGTCTGGAaa....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus var. oleiformis
FY443133       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus cv GSK3-1
FD984455       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus raphanistrum subsp. landra
EW720102       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus var. oleiformis
EX891511       --> GAAGCGTCTGGAGATAAGTAGTGTTGAGGGTAGGGTCGGGTAAACCAGTG  Raphanus sativus var. oleiformis

               501    -    551
UN17364        --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EV527107       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY442756       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EY904948       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY443982       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EV569389       <-- TTGGTGAAGTTGTATAGCCTGTCCCATAATAAACTGGCATTGGTTTTT-A
EW715532       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX754057       <-- TTGGTGAAGT-GTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTT--A
EY921327       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD569697       <-- TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD980726       <-- ...........................................TTTTT-A
FD981060       <-- ..................................................
EX754472       <-- ..................................................
EX757891       <-- ..................................................
FD961884       <-- ..................................................
EV539283       <-- ..................................................
EY944436       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EY945043       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX758788       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY442905       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY441244       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY441585       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EV573946       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD529829       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EV531428       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EY901499       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EY902525       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX758465       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX899945       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX906913       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD573852       --> ..................................................
FD976575       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EW730764       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD976849       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY445712       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY445813       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD975673       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY446156       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
EX761358       --> ..................................................
EY926913       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FY443133       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTT-A
FD984455       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACCGGCATTGGTTTTT-A
EW720102       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTtgg......
EX891511       --> TTGGTGAAGTTGTATAGCCTGTCC-ATAATAAACTGGCATTGGTTTTTTA

               551    -    601
UN17364        --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- CCAAAAGTGTGACCCCCGGAAAGGGGCAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. maritimus
EV527107       <-- CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. maritimus
FY442756       <-- CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
EY904948       <-- CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
EV569389       <-- CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. landra
EW715532       <-- CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus var. oleiformis
EX754057       <-- CCAAAAGTGTGACC-CCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- CCAAAAGTGTGACC-CCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. landra
FD569697       <-- CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- ....................GAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- ......................GGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- ......................GGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- .......................GG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> CCAAAGGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> CCAAAGGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
FY441244       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
FY441585       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
EV573946       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. landra
FD529829       --> CCAAAAGTGTGACCCCCGGAAAGGGGCAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. maritimus
EV531428       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. maritimus
EY901499       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> CCAAAAGTGTGACCCCCGGAAAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv Early Scarlet Globe
EX906913       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGAT...............  Raphanus sativus cv Early Scarlet Globe
FD976849       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
FY445813       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
FD975673       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAA.....................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus var. oleiformis
FY443133       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAACGAGATCAGAAGGAAGGTTAA  Raphanus sativus cv GSK3-1
FD984455       --> CCAAAAGTGTGACCCCCGGAAAGGG-CATCGAGATCAGAAGGAAGGTTAA  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> CCAAAAGTGTGACCTCCGGAGAGGG-CAAC....................  Raphanus sativus var. oleiformis

               601    -    651
UN17364        --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- GCCCGACACTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. maritimus
EV527107       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. maritimus
FY442756       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
EY904948       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
EV569389       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. landra
EW715532       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus var. oleiformis
EX754057       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. landra
FD569697       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- GCCCGACATTGCTGAAACTGGCTTTAAGCTGGGGCAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
FY441244       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
FY441585       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
EV573946       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. landra
FD529829       --> GCCCGACACTGCTGAAACTGGCTTTA........................  Raphanus raphanistrum subsp. maritimus
EV531428       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. maritimus
EY901499       --> GCCCGACATTGCTGAAACTGGCTTT.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> GCCCGACATTGC......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv Early Scarlet Globe
EX906913       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAAT...  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> GCCCGACATTGCTGAAACTGGCTTTAAGCTGGGGCAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
FY445813       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus var. oleiformis
FY443133       --> GCCCGACATTGCTGAAACTGGCTTTAAGTTGGGGCAGCGTGAAGAATGGA  Raphanus sativus cv GSK3-1
FD984455       --> GCCCGACATTGCTGAAACTGGCTTCAAGTTGGGGAAGCGTGAAGAATGGA  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               651    -    701
UN17364        --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. maritimus
EV527107       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAAAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. maritimus
FY442756       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
EY904948       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
EV569389       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCCATCTCG  Raphanus raphanistrum subsp. landra
EW715532       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus var. oleiformis
EX754057       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. landra
FD569697       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> GCAGGAAGATTGTTATTA................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTG............  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
FY441244       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
FY441585       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
EV573946       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCCATCTCG  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> GCAGGAAGATTGTTATTAGAAAGATTAAAAAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv Early Scarlet Globe
EX906913       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
FY445813       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGC...............  Raphanus sativus var. oleiformis
FY443133       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAAGCTATCTCG  Raphanus sativus cv GSK3-1
FD984455       --> GCAGGAAGATTGTTATTAGAAAGATTAAAGAAAGCTTGTAGGCTATCTCG  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               701    -    751
UN17364        --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. maritimus
EV527107       <-- TCTTCCCAAAGGAGCCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. maritimus
FY442756       <-- TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
EY904948       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
EV569389       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. landra
EW715532       <-- TCTCCCCCAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus var. oleiformis
EX754057       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. landra
FD569697       <-- TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- TCTCCCCAAAGGAACCCTCCATGAAGGACCTACTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> TCTCCCCAAAGGAACCCTCCAT............................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
FY441244       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
FY441585       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
EV573946       --> TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> TCTTCCCAAAGGAGCCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> TCTTCCCAAAGGAACCCTCCATGAAAGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv Early Scarlet Globe
EX906913       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTACTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
FY445813       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> TCTCCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus sativus cv GSK3-1
FD984455       --> TCTTCCCAAAGGAACCCTCCATGAAGGACCTCCTGCCAGATTGACTGATT  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               751    -    801
UN17364        --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAgtc.........  Raphanus raphanistrum subsp. maritimus
EV527107       <-- GTTGAGCTGCGATAGTTAGAATATCTG.......................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
EY904948       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAGACAGTCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
EV569389       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. landra
EW715532       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus var. oleiformis
EX754057       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. landra
FD569697       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
FY441244       --> GTTGAGCTGCGATAGTTAGAATATCTGCACAT..................  Raphanus sativus cv GSK3-1
FY441585       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
EV573946       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAGTCCCCGGACAT  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAgtc.........  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> GTTGAGCTGCGAT.....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv Early Scarlet Globe
EX906913       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATC.........  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
FY445813       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAAACAATCCCCGGACAT  Raphanus sativus cv GSK3-1
FD984455       --> GTTGAGCTGCGATAGTTAGAATATCTGCACATGAA...............  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               801    -    851
UN17364        --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................
EV527107       <-- ..................................................
FY442756       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EY904948       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FY443982       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EV569389       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EW715532       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EX754057       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EY921327       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD569697       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD980726       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD981060       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EX754472       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EX757891       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD961884       <-- TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EV539283       <-- ..................................................
EY944436       --> ..................................................
EY945043       --> ..................................................
EX758788       --> ..................................................
FY442905       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCT.....
FY441244       --> ..................................................
FY441585       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
EV573946       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD529829       --> ..................................................
EV531428       --> ..................................................
EY901499       --> ..................................................
EY902525       --> ..................................................
EX758465       --> ..................................................
EX899945       --> TGTGCCTCCACTGCTGTT................................
EX906913       --> ..................................................
FD573852       --> ..................................................
FD976575       --> ..................................................
EW730764       --> ..................................................
FD976849       --> TGTGCCTCCACTGCTGTTTTCATTCTGT......................
FY445712       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FY445813       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD975673       --> ..................................................
FY446156       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAAC..................
EX761358       --> ..................................................
EY926913       --> ..................................................
FY443133       --> TGTGCCTCCACTGCTGTTTTCATTCTGTCAACCACTGGAAATCCTCGAGC
FD984455       --> ..................................................
EW720102       --> ..................................................
EX891511       --> ..................................................

               851    -    901
UN17364        --> CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus sativus cv GSK3-1
EY904948       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus sativus cv GSK3-1
EV569389       <-- CGAGTTTGCATTTGGCGCGGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. landra
EW715532       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus sativus var. oleiformis
EX754057       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. landra
FD569697       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAACGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- CGAGTTTGCATTTGGCGCAGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- CGAGTTTGCATTTGGCGCGGCATCTTTTTCTGTTCGAAATGATGTTGTGT  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> CGAGTTTGCATTTG....................................  Raphanus sativus cv GSK3-1
EV573946       --> CGAGTTTG..........................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> CGAGTTTGCATTTGGCGCAGCATCTTTTTCcgt.................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> CGAGTTTGCATTTGGCGCAGCATCTTTTTCCGTTCGAAACGATGTTGTGT  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               901    -    951
UN17364        --> TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- TGTCTAACAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus sativus cv GSK3-1
EY904948       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- TGTCTAACAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus sativus cv GSK3-1
EV569389       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. landra
EW715532       <-- TGTCTAACAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus sativus var. oleiformis
EX754057       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. landra
FD569697       <-- TGTCTAACAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- TGTCTAACAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- TGTCTAACAAGATCGATGCGTCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- TGTCTAGCAAGATCGATGCATCGCAACCATTCACGAAGCAGTCGTGGAAG  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> ..................................................  Raphanus sativus cv GSK3-1
EV573946       --> ..................................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> ..................................................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> TGTCTAACAAGATCGATGCATC............................  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               951    -   1001
UN17364        --> TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................
EV527107       <-- ..................................................
FY442756       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EY904948       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
FY443982       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EV569389       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EW715532       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EX754057       <-- TGAAGACGAAGGAGGC-CGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EY921327       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
FD569697       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
FD980726       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
FD981060       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EX754472       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EX757891       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
FD961884       <-- TGAAGACGAAGGAGGCTCGCAGCAATACGAGGATCCGATCTTAGCTCGTT
EV539283       <-- ..................................................
EY944436       --> ..................................................
EY945043       --> ..................................................
EX758788       --> ..................................................
FY442905       --> ..................................................
FY441244       --> ..................................................
FY441585       --> ..................................................
EV573946       --> ..................................................
FD529829       --> ..................................................
EV531428       --> ..................................................
EY901499       --> ..................................................
EY902525       --> ..................................................
EX758465       --> ..................................................
EX899945       --> ..................................................
EX906913       --> ..................................................
FD573852       --> ..................................................
FD976575       --> ..................................................
EW730764       --> ..................................................
FD976849       --> ..................................................
FY445712       --> ..................................................
FY445813       --> ..................................................
FD975673       --> ..................................................
FY446156       --> ..................................................
EX761358       --> ..................................................
EY926913       --> ..................................................
FY443133       --> ..................................................
FD984455       --> ..................................................
EW720102       --> ..................................................
EX891511       --> ..................................................

               1001   -   1051
UN17364        --> GACGATGATTCCCCGGACGATGGTAGACACGTTAGGGCATGTATTGTCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus sativus cv GSK3-1
EY904948       <-- GACGATGATTC.......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus sativus cv GSK3-1
EV569389       <-- GACGATGATTCCCCGGACGATGGTAGTCACGTTAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. landra
EW715532       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus sativus var. oleiformis
EX754057       <-- GACGATAATTCCCCGGATGATGGTAGTCACGTTAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GACGATGATTCCCCGGACGATGGTAGTCACTTTAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. landra
FD569697       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- GACGATGATTCCCCGGACGATGGTAGACACGTCAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- GACGATGATTCCCCGGATGATGGTAGTCACGTTAGGGCA-GTATTGTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- GACGATGATTCCCCGGACGAT---G-TCACGTTAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GACGATGATTCCCCGGACGATGGTAGTCACGTTAGGGCATGTATTGTCGT  Raphanus raphanistrum subsp. maritimus
EV539283       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> ..................................................  Raphanus sativus cv GSK3-1
EV573946       --> ..................................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> ..................................................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> ..................................................  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               1051   -   1101
UN17364        --> AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- AGAAAGTAGGAGTTAGTACTTGAGCACTAGAGAAAGATGAATGAAGCATA  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- AGAAAGTAGGAGTTAGTACTTGAGCACTAGAGAAAGATGAATGAAGCATA  Raphanus sativus cv GSK3-1
EV569389       <-- AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. landra
EW715532       <-- AGAAAGCAGGAGTTAGTACTTGAGCACTAGAGAAAGATGAATGAAGCATA  Raphanus sativus var. oleiformis
EX754057       <-- AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. landra
FD569697       <-- AGAAAGTAc.........................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- AGAAAGTAGGAGTTAGTACTTGAGCACTAGAGAAAGATGAATGAAGCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- AGAAAGTAGGAGTTAGTACTTGAGCACTAGAGAAAGATGAATGAAGCATA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- AGGAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- AGAAAGTAGGAGTTAGTGCTTGAGCACTAGAGAGAGATGAATGAAGCATA  Raphanus raphanistrum subsp. maritimus
EV539283       <-- .............................................GCATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> ..................................................  Raphanus sativus cv GSK3-1
EV573946       --> ..................................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> ..................................................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> ..................................................  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               1101   -   1151
UN17364        --> AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- AGGCATCCCACTGTTATAAGGG-------T--TGTCCAAGTTGACAACGA  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- AGGCATCCCACTGTTATAAGGG-------T--TGTCCAAGTTGACAACGA  Raphanus sativus cv GSK3-1
EV569389       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. landra
EW715532       <-- AGGCATCCCACTGTTATAAGGGTTGTCCAAGTTGACAACGAAGACAACGA  Raphanus sativus var. oleiformis
EX754057       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. landra
FD569697       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- AGGCATCCCACTGTTATAAGGG-------T--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- AGGCATCCCACTGTTATAAGGG-------T--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. maritimus
EV539283       <-- AGGCATCCCACTGTTATAAGGGTT----AA--TGTCCAAGTTGACAACGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> ..................................................  Raphanus sativus cv GSK3-1
EV573946       --> ..................................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> ..................................................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> ..................................................  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               1151   -   1201
UN17364        --> AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................
EV527107       <-- ..................................................
FY442756       <-- AGACAACGAAGAcaaagaagaggaatgcat....................
EY904948       <-- ..................................................
FY443982       <-- AGACAACGAAGAcaaagaagagga..........................
EV569389       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
EW715532       <-- AGACAAAGAAGAGGAATGCATTTATT-CTCCGAAGAAAATTATCTGATTG
EX754057       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
EY921327       <-- AGACAAAGAAGAGGAATGCGTTTTTTTCTCCGAAGAAAATTCTCTGAATG
FD569697       <-- ..................................................
FD980726       <-- AGACAAAGAAGAGGAATGCATTTTTT-CTCCGAAGAAAATTATCTGATTG
FD981060       <-- AGACAAAGAAGAGGAATGCATTTTTT-CTCCGAAGAAAATTATCTGATTG
EX754472       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
EX757891       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
FD961884       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
EV539283       <-- AGACAAAGAAGAGGAATGCATTTTTTTCTCCGAAGAAAATTCTCTGATTG
EY944436       --> ..................................................
EY945043       --> ..................................................
EX758788       --> ..................................................
FY442905       --> ..................................................
FY441244       --> ..................................................
FY441585       --> ..................................................
EV573946       --> ..................................................
FD529829       --> ..................................................
EV531428       --> ..................................................
EY901499       --> ..................................................
EY902525       --> ..................................................
EX758465       --> ..................................................
EX899945       --> ..................................................
EX906913       --> ..................................................
FD573852       --> ..................................................
FD976575       --> ..................................................
EW730764       --> ..................................................
FD976849       --> ..................................................
FY445712       --> ..................................................
FY445813       --> ..................................................
FD975673       --> ..................................................
FY446156       --> ..................................................
EX761358       --> ..................................................
EY926913       --> ..................................................
FY443133       --> ..................................................
FD984455       --> ..................................................
EW720102       --> ..................................................
EX891511       --> ..................................................

               1201   -   1251
UN17364        --> GTTTTACTAGAGAAAGATGAGGAAACTCCATATCACAAAGAATCCTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD533716       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV527107       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FY442756       <-- ..................................................  Raphanus sativus cv GSK3-1
EY904948       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY443982       <-- ..................................................  Raphanus sativus cv GSK3-1
EV569389       <-- GTTTTACTAGAGAAAGATcc..............................  Raphanus raphanistrum subsp. landra
EW715532       <-- GTTTTACTGGAGAAAGATcc..............................  Raphanus sativus var. oleiformis
EX754057       <-- GTTTTAC...........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY921327       <-- GTTTTACTAGAGAAAGATcc..............................  Raphanus raphanistrum subsp. landra
FD569697       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD980726       <-- GTTTTACTGGAGAAAGATGAGGAAACTCCATATCACcc............  Raphanus raphanistrum subsp. raphanistrum (NY)
FD981060       <-- GTTTTACTGGAGAAAGATcc..............................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX754472       <-- GTTTTAC...........................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757891       <-- GTTTTACTAGAGAAAGATGAGGAAACTCCATATCACAAAGAATCCTTTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD961884       <-- GTTTTACTAGAGAAAGATcc..............................  Raphanus raphanistrum subsp. maritimus
EV539283       <-- GTTTTACTAGcc......................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY944436       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY945043       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EX758788       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY442905       --> ..................................................  Raphanus sativus cv GSK3-1
FY441244       --> ..................................................  Raphanus sativus cv GSK3-1
FY441585       --> ..................................................  Raphanus sativus cv GSK3-1
EV573946       --> ..................................................  Raphanus raphanistrum subsp. landra
FD529829       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531428       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY901499       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY902525       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX758465       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX899945       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX906913       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD573852       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976575       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW730764       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD976849       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY445712       --> ..................................................  Raphanus sativus cv GSK3-1
FY445813       --> ..................................................  Raphanus sativus cv GSK3-1
FD975673       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY446156       --> ..................................................  Raphanus sativus cv GSK3-1
EX761358       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY926913       --> ..................................................  Raphanus sativus var. oleiformis
FY443133       --> ..................................................  Raphanus sativus cv GSK3-1
FD984455       --> ..................................................  Raphanus raphanistrum subsp. landra
EW720102       --> ..................................................  Raphanus sativus var. oleiformis
EX891511       --> ..................................................  Raphanus sativus var. oleiformis

               1251   -   1301
UN17364        --> TCC
                   ~~~
FD533716       <-- ...
EV527107       <-- ...
FY442756       <-- ...
EY904948       <-- ...
FY443982       <-- ...
EV569389       <-- ...
EW715532       <-- ...
EX754057       <-- ...
EY921327       <-- ...
FD569697       <-- ...
FD980726       <-- ...
FD981060       <-- ...
EX754472       <-- ...
EX757891       <-- TCC
FD961884       <-- ...
EV539283       <-- ...
EY944436       --> ...
EY945043       --> ...
EX758788       --> ...
FY442905       --> ...
FY441244       --> ...
FY441585       --> ...
EV573946       --> ...
FD529829       --> ...
EV531428       --> ...
EY901499       --> ...
EY902525       --> ...
EX758465       --> ...
EX899945       --> ...
EX906913       --> ...
FD573852       --> ...
FD976575       --> ...
EW730764       --> ...
FD976849       --> ...
FY445712       --> ...
FY445813       --> ...
FD975673       --> ...
FY446156       --> ...
EX761358       --> ...
EY926913       --> ...
FY443133       --> ...
FD984455       --> ...
EW720102       --> ...
EX891511       --> ...