1      -     51
UN17371        --> GGATCTCATATACCAAAAAAAACAGAAGATTCAACAAGAAGAAAAAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- ...............................agatcacAAGAGAAAATG-
EV543554       <-- ..................................................
EV531342       <-- ..................................................
FD976093       <-- ..................................................
EW729381       <-- ..................................................
EV529630       <-- ..................................................
FD544581       <-- ..................................................
FD977412       <-- ..................................................
EY894694       <-- ..................................................
EX753354       <-- ..................................................
FD940879       --> GGATCTCATATACCAAAAAAAACAGAAGATTCAACAAGAAGAAAAAATGT
FD981703       --> .....ggatacaaaAAAAAAGACAGAAGATTCAACAAGAAGAAAAAATGT
EV524698       --> ..........ggatactAAACACAGAAGATTCAACAAGAAGAAAAAATGT
EV527001       --> ........ggatatactAAACACAGAAGATTCAACAAGAAGAAAAAATGT
EX749741       --> ..........ggatactAAACACAGAAGATTCAACAAGAAGAAAAAATGT
EY898719       --> ..........ggatactAAACACAGAAGATTCAACAAGAAGAAAAAATGT
FD534785       --> ..........ggatactAAACACAGAAGATTCAACAAGAAGAAAAAATGT
EV549294       --> ..................................................

               51     -    101
UN17371        --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- -TGCTATTTT-CAAAAGACGTT-GCTCATCCA--CGAAGAGCTAA-CAGC
EV543554       <-- .......................................AGCTAAACAGC
EV531342       <-- ..................................................
FD976093       <-- ..................................................
EW729381       <-- ..................................................
EV529630       <-- ..................................................
FD544581       <-- ..................................................
FD977412       <-- ..................................................
EY894694       <-- ..................................................
EX753354       <-- ..................................................
FD940879       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
FD981703       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
EV524698       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
EV527001       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
EX749741       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
EY898719       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
FD534785       --> TGGCTATTTTTCAAAAGACGTTTGCTCATCCACCGGAAGAGCTAAACAGC
EV549294       --> ..................................................

               101    -    151
UN17371        --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCCGGGAGAAACTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- --CGCTTCA--ACTT-CCGGCAAA-CCCCAAAACTTCTGGGAGAA-CTCT
EV543554       <-- CCGGCTTCAAACCTTTCCGGCAAAACCCGAAAACTTCCCAGAGAAACTCT
EV531342       <-- ............................CAAAACTTCCGGGAGAAACTCT
FD976093       <-- ..................................................
EW729381       <-- ..................................................
EV529630       <-- ..................................................
FD544581       <-- ..................................................
FD977412       <-- ..................................................
EY894694       <-- ..................................................
EX753354       <-- ..................................................
FD940879       --> CCGGCTTCAACCCTTTCCGGCAAAACCCCATAACTTCCGGGGGAAACTCT
FD981703       --> CCGGCTTCAAACCTTTCCGGCAAAACCCGAAAACTTCCCAGAGAAACTCT
EV524698       --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCCGGGAGAAACTCT
EV527001       --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCCGGGAGAAACTCT
EX749741       --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCCGGGAGAAACTCT
EY898719       --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCCGGGAGAAACTCT
FD534785       --> CCGGCTTCAAACCTTTCCGGCAAAACCCCAAAACTTCTGGGAGAAACTCT
EV549294       --> ..................................................

               151    -    201
UN17371        --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- CTCTGACTTC-TTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV543554       <-- CTGTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV531342       <-- CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
FD976093       <-- .............TCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EW729381       <-- ..............CAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV529630       <-- ............................TCTGCTTTCTCCATGAGCTTCG
FD544581       <-- ..................................................
FD977412       <-- ..................................................
EY894694       <-- ..................................................
EX753354       <-- ..................................................
FD940879       --> CT--GACTTCCTTTCAAACCATCCAGACTCTGCgttg.............
FD981703       --> CTGTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV524698       --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV527001       --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EX749741       --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EY898719       --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
FD534785       --> CTCTGACTTCCTTTCAAACCATCCAGACTCTGCTTTCTCCATGAGCTTCG
EV549294       --> ..................................................

               201    -    251
UN17371        --> GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCATAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
EV543554       <-- GCGATTCCGCTGCCCTCGCTTTCGCCCGCCCAGAAAACTCTCACCGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
FD976093       <-- GCGACTCCGCTGCCCTCGCTTTCGCCCGCCCAGAAAACTCTCACCGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTCACCGTCCA  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
FD544581       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> GCGACTCCGCTGCCCTCACTTTCGCCCGCCCAGAAAACTCTCACCGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
EV527001       --> GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
EX749741       --> GCGACTCCGCTGTCCTCGCTTTCGCCCACCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
EY898719       --> GTGACTCCGCTGTCCTCGCTTTCGCCCGCCCAGAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
FD534785       --> GCGACTCCGCTGTCCTCGCTTTCGCCCGCCCATAAAACTCTAACCGTCCA  Raphanus raphanistrum subsp. maritimus
EV549294       --> ..........................................gCCGTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN17371        --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTCGGAGCGTT  Raphanus raphanistrum subsp. maritimus
EV543554       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGCGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
FD976093       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGCGTTTCTTGGAGCGTT  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
FD544581       <-- ....TGTTTAGTGGCATCGATTGAATCTACTGTGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- ................................TGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
EV527001       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGCGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
EX749741       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
EY898719       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCGTT  Raphanus raphanistrum subsp. maritimus
FD534785       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTCGGAGCGTT  Raphanus raphanistrum subsp. maritimus
EV549294       --> AGGATGTTTAGTGGCATCGATGGAATCTACTGTGTGTTTCTTGGAGCATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN17371        --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
EV543554       <-- GAACAACCTATGCGACTTGAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
FD976093       <-- GAACAACCTATGCGACTTGAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCGT  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
FD544581       <-- GAACAACCTATGCGACTTGAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- GAACAACCTATGCGACTTGAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> GAACAACCTATGCGACTTGAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
EV527001       --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
EX749741       --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
EY898719       --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
FD534785       --> GAACAACCTATGCGACTTGAACAAGCAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. maritimus
EV549294       --> GAACAACCTATGCGACTTCAACAAACAGTACGGTTTATCTGGAAAATCCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               351    -    401
UN17371        --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
EV543554       <-- CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
FD976093       <-- CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- CAAACGAAGCCATGTTTGTGATCGAAGCTTACCGAACACTTCGTGACTGT  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
FD544581       <-- CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
EV527001       --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
EX749741       --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
EY898719       --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
FD534785       --> CAAACGAAGCCATGTTTGTGATCGAAGCGTACCGAACACTACGTGACCGT  Raphanus raphanistrum subsp. maritimus
EV549294       --> CAAACGAAGCCATGTTTGTGATCGAAGCCTACCGAACACTGCGTGACCGT  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN17371        --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
EV543554       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
FD976093       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- GGTCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
FD544581       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
EV527001       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
EX749741       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
EY898719       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
FD534785       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGATGGAAGTTTTGC  Raphanus raphanistrum subsp. maritimus
EV549294       --> GGCCCTTACCCAGCTGATCAAGTTCTCAGAGGTCTCGACGGAAGTTTTGC  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN17371        --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EV543554       <-- TTTTGTCGTTTACGATACTCAGACATCCTCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
FD976093       <-- TTTTGTCGTCTACGATACTCAGACATCCTCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCAGCTCTTGGAT  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- TTTTGTCGTTTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
FD544581       <-- TTTTGTCGTCTACGATACTCAGACATCCCCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- TTTTGTCGTCTACGATACTCAGACATCCTCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- .....TCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> TTTTGTCGTCTACGATACTCAGACATCCTCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EV527001       --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EX749741       --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EY898719       --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
FD534785       --> TTTTGTCGTCTACGATACTCAGACCTCCTCTGTTTTCGCCGCTCTTGGAT  Raphanus raphanistrum subsp. maritimus
EV549294       --> TTTTGTCGTCTACGATACTCAGACATCCTCTGTTTTCGCAGCTCTAGGAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17371        --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EV543554       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV531342       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
FD976093       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EW729381       <-- CTGATGGAGCTGAGAGTTTGTACTGGGGAATAGCTGCAGATGGATCTGTT  Raphanus sativus cv Early Scarlet Globe
EV529630       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
FD544581       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977412       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894694       <-- CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EX753354       <-- ......................TTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
FD940879       --> ..................................................  Raphanus sativus var. oleiformis
FD981703       --> CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV524698       --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EV527001       --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EX749741       --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EY898719       --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
FD534785       --> CTGATGGAGCAGAGAGTTTGTATTGGGGGATAGCTGCAGATGGGTCCGTT  Raphanus raphanistrum subsp. maritimus
EV549294       --> CTGATGGAGCAGAGAGTTTGTATTGGGGCATAGCTGCAGATGGATCTGTT  Raphanus raphanistrum subsp. raphanistrum (NY)

               551    -    601
UN17371        --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EV543554       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EV531342       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
FD976093       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EW729381       <-- GTTATGTCTGATGATATCAAGATCATTAAGCAAGGTTGTGCTAAGTCATT
EV529630       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
FD544581       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
FD977412       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EY894694       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EX753354       <-- GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
FD940879       --> ..................................................
FD981703       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EV524698       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EV527001       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EX749741       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EY898719       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
FD534785       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT
EV549294       --> GTTATGTCTGATGATATCAAGATTATTAAGCAAGGATGTGCTAAGTCATT

               601    -    651
UN17371        --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EV543554       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EV531342       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
FD976093       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EW729381       <-- CGCTCCTTTTCCGACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EV529630       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
FD544581       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACATTGAGAGTGGTTTGATG
FD977412       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EY894694       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EX753354       <-- TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
FD940879       --> ..................................................
FD981703       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EV524698       --> TGCTCCTTTTCCAACAGGGGTGTATGTTTCACAGTGAGAGTGGTTTGATG
EV527001       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EX749741       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EY898719       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
FD534785       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG
EV549294       --> TGCTCCTTTTCCAACAGGG-TGTATGTTTCACAGTGAGAGTGGTTTGATG

               651    -    701
UN17371        --> AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
EV543554       <-- GGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
EV531342       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
FD976093       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
EW729381       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
EV529630       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
FD544581       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
FD977412       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
EY894694       <-- AGTTTTGAGCATCCGAAGAATAAGATTAAGGCGATGCAGAGGATTGATAG
EX753354       <-- AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG
FD940879       --> ..................................................
FD981703       --> AGTTTTGAGCATCCGAAGAATAAGATGAAacgatgc..............
EV524698       --> AGTTTTGAGCATCCGAAGAATAAGATGAAG-CGATGCAGAG-ATTGATAG
EV527001       --> AGTTTTGAGCATCCGAAGAATAAGATGAAAGCGATGCAGAGGATTGATAG
EX749741       --> AGTTTTGAGCATCCGAAGAATAAGAT........................
EY898719       --> AGTTTTGAGCATCCGAAGA-TAAGAT-AA-GCGATGCAGAGGAT-GATAG
FD534785       --> AGTTTTGAGCATCCGAAGAATAAGATGAAG-CGATGCAGAGGATTGATAG
EV549294       --> AGTTTTGAGCATCCGAAGAATAAGATGAAGGCGATGCAGAGGATTGATAG

               701    -    751
UN17371        --> TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EV543554       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EV531342       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
FD976093       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EW729381       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EV529630       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
FD544581       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
FD977412       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EY894694       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
EX753354       <-- TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA
FD940879       --> ..................................................
FD981703       --> ..................................................
EV524698       --> TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCA-GA
EV527001       --> T.................................................
EX749741       --> ..................................................
EY898719       --> TGAAGGG--TATATGTGGAGCTAACTTTAA-G-TGATACTTACTC--AGA
FD534785       --> TGAAGGG-TTATATGTG-AGCTA-CTTTAAAGT-GATACTTACTCCA-GA
EV549294       --> TGAAGGGGTTATATGTGGAGCTAACTTTAAAGTTGATACTTACTCCAAGA

               751    -    801
UN17371        --> TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
EV543554       <-- TCAATAGCATTCCGAGTAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
EV531342       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
FD976093       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
EW729381       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
EV529630       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
FD544581       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
FD977412       <-- TCAATAGCATTCCGAGTAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
EY894694       <-- TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTT-AGCAAAC
EX753354       <-- TCAATAGCATTCCGAGGCGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC
FD940879       --> ..................................................
FD981703       --> ..................................................
EV524698       --> TCA-TAGCATTCCG....................................
EV527001       --> ..................................................
EX749741       --> ..................................................
EY898719       --> TC-ATAGCATT.......................................
FD534785       --> TCA-TAGCATTCCGAGGAGGG--AGTG-AGCT-ATTGGTCTT-AGCAA-C
EV549294       --> TCAATAGCATTCCGAGGAGGGGAAGTGAAGCTAATTGGTCTTTAGCAAAC

               801    -    851
UN17371        --> TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
EV543554       <-- TCTAGTTAATGAAAGGACGAAGAAGGAGAGTTACTTTTGTTCTTTGATGT
EV531342       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
FD976093       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
EW729381       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
EV529630       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
FD544581       <-- TCTAGTTAATGAAAGGATGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
FD977412       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
EY894694       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
EX753354       <-- TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT
FD940879       --> ..................................................
FD981703       --> ..................................................
EV524698       --> ..................................................
EV527001       --> ..................................................
EX749741       --> ..................................................
EY898719       --> ..................................................
FD534785       --> TCTAGTatg.........................................
EV549294       --> TCTAGTTAATGAAAGGACGAAGAAGAAGAGTTACTTTTGTTCTTTGATGT

               851    -    901
UN17371        --> GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
EV543554       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
EV531342       <-- GATTTCTGTAAAATAATAAACGTACTAATAAA..................
FD976093       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
EW729381       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
EV529630       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
FD544581       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
FD977412       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
EY894694       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATG...............
EX753354       <-- GATTTCTGTAAAATAATAAACGTACTAATAAAATGGTTTTTTCCTGATTC
FD940879       --> ..................................................
FD981703       --> ..................................................
EV524698       --> ..................................................
EV527001       --> ..................................................
EX749741       --> ..................................................
EY898719       --> ..................................................
FD534785       --> ..................................................
EV549294       --> GATTTCTGTAAAATAATAAACGTACTAATAAAATG...............

               901    -    951
UN17371        --> AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCTGACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD530618       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCTGACTC
EV543554       <-- t.......................................
EV531342       <-- ........................................
FD976093       <-- Ag......................................
EW729381       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCTGAC..
EV529630       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTT.........
FD544581       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCTGACTC
FD977412       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCTGACTC
EY894694       <-- ........................................
EX753354       <-- AATTTGGTGGAGTGATAATAAAATGGTTTTTTCCCGACTC
FD940879       --> ........................................
FD981703       --> ........................................
EV524698       --> ........................................
EV527001       --> ........................................
EX749741       --> ........................................
EY898719       --> ........................................
FD534785       --> ........................................
EV549294       --> ........................................