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Alignment for radish unigene UN17401

               1      -     51
UN17401        --> GAGATTTGATCTCAATTATTGATTTCTCAGAGAACTCATAGCCAAACAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GAGATTTGATCTCAATTATTGATTTCTCAGAGAACTCATAGCCAAACAGA
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               51     -    101
UN17401        --> GACAGAGAGAGACTACAATGGCGACTATAGCTGCTGCAACCGGAGTTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GACAGAGAGAGACTACAATGGCGACTATAGCTGCTGCAACCGGAGTTCTA
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               101    -    151
UN17401        --> AAGGTACCCGAGGCGGTTCCCACGAGGAGGACTCTTTCTTTCTCCTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> AAGGTACCCGAGGCGGTTCCCACGAGGAGGACTCTTTCTTTCTCCTCCTC
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               151    -    201
UN17401        --> TGTATCTTTATCCGACGAGAAGGCTTCTCTCCGCCGAGGATCCGTCTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> TGTATCTTTATCCGACGAGAAGGCTTCTCTCCGCCGAGGATCCGTCTTTT
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               201    -    251
UN17401        --> CTCGTGGTGGCCGAGTGAGGAATAATCCGATGATCGTGTCTCCCAAGGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> CTCGTGGTGGCCGAGTGAGGAATAATCCGATGATCGTGTCTCCCAAGGCC
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               251    -    301
UN17401        --> GTCTCCGATCCTCAGAATTCACAGACCTGTCTCGATCCTGACGCGAGCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GTCTCCGATCCTCAGAATTCACAGACCTGTCTCGATCCTGACGCGAGCAG
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               301    -    351
UN17401        --> GAGTGTGTTGGGGATCATCTTAGGAGGTGGGGCCGGAACTCGTCTCTATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GAGTGTGTTGGGGATCATCTTAGGAGGTGGGGCCGGAACTCGTCTCTATC
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               351    -    401
UN17401        --> CTCTCACCAAGAAGAGAGCCAAACCCGCCGTCCCTCTCGGCGCCAACTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> CTCTCACCAAGAAGAGAGCCAAACCCGCCGTCCCTCTCGGCGCCAACTAC
EY937669       --> ..................................gCTCGGCGCCAACTAC
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               401    -    451
UN17401        --> AGGCTCATCGACATCCCCGTCAGCAACTGTCTCAACAGCAACATCAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> AGACTCATCGACATCCCCGTCAGCAACTGTCTCAACAGCAACATCAACAA
EY937669       --> AGGCTCATCGACATCCCCGTCAGCAACTGCCTCAACAGCAACATCAACAA
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               451    -    501
UN17401        --> GATCTACGTCCTCACGCAGTTCAACTCCGCCTCTCTAAACCGCCATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GATCTACGTCCTCACGCAGTTCAACTCCGCCTCTCTAAACCGCCATCTCT
EY937669       --> GATCTACGTCCTCACGCAGTTCAACTCCGCCTCTCTAAACCGCCACCTCT
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               501    -    551
UN17401        --> CGCGAGCCTACGCCACTAACATGGGAGGTTACAAGAACGAAGGCTTCGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> CGCGAGCCTACGCCACTAACATGGGAGGTTACAAGAACGAAGGCTTCGTT
EY937669       --> CGCGAGCCTACGCCACTAACATGGGAGGTTACAAGAACGAAGGCTTCGTC
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               551    -    601
UN17401        --> GAAGTCTTCGCCGCTCAACAGAGTCCTGAAAACCCCAACTGGTTTCAGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> GAAGTCCTCGCCGCTCAACAGAGTCCTGAAAACCCCAACTGGTT......
EY937669       --> GAAGTCTTCGCAGCTCAACAGAGTCCTGAAAACCCCAACTGGTTTCAGGG
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               601    -    651
UN17401        --> GACGGCTGATGCGGTGAGGCAATACTTGTGGTTGTTTGAGGAGCATAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> GACGGCTGATGCGGTGAGGCAATACTTGTGGTTGTTTGAGGAGCATAATG
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               651    -    701
UN17401        --> TTCTTGAGTATTTGATTCTTGCTGGGGATCATTTGTATCGAATGGACTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> TTCTTGAGTATTTGATTCTTGCTGGGGATCATTTGTATCGAATGGACTAT
FD948892       --> .......................GGGGATCATTTGTATCGAATGGACTAT
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               701    -    751
UN17401        --> GAGAAGTTCATTCAAGCGCATAGGGAGACTGATGCTGATATCACCGTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> GAGAAGTTCATTCAAGCGCATAGGGAGACTGATGCTGATATCACCGTGGC
FD948892       --> GAGAAGTTCATTCAAGCGCATAGGGAGACTGATGCTGATATCACCGTGGC
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               751    -    801
UN17401        --> TGCGTTACCGATGGACGAGGAACGAGCCACTGCTTTTGGGTTGATGAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> TGCGTTACCGATGGACGAGGAACGAGCCACTGCTTTTGGGTTGATGAAGA
FD948892       --> TGCGTTACCGATGGACGAGGAACGAGCCACTGCTTTTGGGTTGATGAAGA
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               801    -    851
UN17401        --> TTGATGAGGAAGGACGTATTGTTGAATTTGCCGAAAAACCAAAGGGGGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..................................................
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> TTGATGAGGAAGGACGTATTGTTGAATTTGCCGAAAAACCAAAGGGGGAG
FD948892       --> TTGATGAGGAAGGACGTATTGTTGAATTTGCCGAAAAACCAAAGGGGGGG
EW717664       --> .........................................gAGGGGGAG
EX747192       --> ................................................GG
EX763312       --> ..................................................

               851    -    901
UN17401        --> CAGTTAAAGGCCATGAAGGTTGATACAACGATTCTAGGTCTTGATGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ..............................................gatA
EY927606       <-- ..................................................
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> CAGTTAAAGGCCATGAAGGTTGATACAACGATTCTAGGTCTTGATGATAA
FD948892       --> CAGTTAAAGGCCATGAAGGTTGATACAACGATTCTAGGTCTTGATGATAA
EW717664       --> CAATTAAAGGCCATGAAGGTCGATACAACGATTCTAGGTCTTGATGATAA
EX747192       --> CAATTAAAGGCCATGAAGGTCGATACAACGATTCTAGGTCTTGATGATAA
EX763312       --> ..................................................

               901    -    951
UN17401        --> GAGAGCCAAGGAGATGCCTTATATTGCGAGTATGGGTATTTATGTTGTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GAGAGCCAAGGAGATGC-TT-TAT-GCGAGTATGGGTATT-ATGT-GT-A
EY927606       <-- ........................TGCGAGTATGGGTATTTATGTTGTTA
EW720462       <-- ..................................................
EY933937       <-- ..................................................
EY931723       --> ..................................................
EY937669       --> GAGAGCCAAGGAGATGCCTTATATTGCGAGTATGGGTATTTATGTTGTTA
FD948892       --> GAGAGCCAAGGAGATGCCTTACATTGCGAGTATGGGTATTTATGTTGTTA
EW717664       --> GAGAGCCAAGGAGATGCCTTATATTGCGAGTATGGGTATTTATGTTGTTA
EX747192       --> GAGAGCCAAGGAGATGCCTTATATTGCGAGTATGGGTATTTATGTTGTTA
EX763312       --> ..................................................

               951    -   1001
UN17401        --> GCAAAGATGTAATGCTGGAGCTACTACGGAACAAGTTTCCTGGAGCTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GCAAAGATGTAATGTTGGAGCTACTACGGAACAAATTCCCTGGAGCTAAT  Raphanus raphanistrum subsp. maritimus
EY927606       <-- GCAAAGATGTAATGTTGGAGCTACTACGGAACAAATTCCCTGGAGCTAAT  Raphanus sativus var. oleiformis
EW720462       <-- ........................................TGGAGCTAAT  Raphanus sativus var. oleiformis
EY933937       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY931723       --> ..................................................  Raphanus sativus var. oleiformis
EY937669       --> GCAAAGATGTAATGCTGGAGCTACTACGGAACAAGTTTCCTGGAGCTAAT  Raphanus sativus cv Early Scarlet Globe
FD948892       --> GCAAAGATGTAATGCTGGAGCTACTACGGAACAAGTTTCCTGGATCTAAT  Raphanus sativus cv Early Scarlet Globe
EW717664       --> GCAAAGATGTAATGCTGGAGCTACTACGGAACAAGTTTCCTGGAGCTAAT  Raphanus sativus var. oleiformis
EX747192       --> GCAAAGATGTAATGTTGGAGCTACTACGGAACAAATTCCCTGGAGCTAAT  Raphanus raphanistrum subsp. maritimus
EX763312       --> .............GCTGGAGCTACTACGGAACAAGTTTCCTGGAGCTAAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN17401        --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGACTCAGGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GACTTTGGAAGCGAAGTCATCCCTGGTGCCATTTCCCTTGGACTCAGGGT
EY927606       <-- GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCTTTGGACTCAGGGT
EW720462       <-- GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGACTCAGGGT
EY933937       <-- .........................................ACTCAGGGT
EY931723       --> ..................................................
EY937669       --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGAC.......
FD948892       --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGACTCAGGGT
EW717664       --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGACTCAGGGT
EX747192       --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCATTTCCCTTGGACTCAGGGT
EX763312       --> GACTTTGGAAGCGAAGTCATCCCTGGTGCCACTTCCCTTGGACTCAGGGT

               1051   -   1101
UN17401        --> GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EY927606       <-- GCAAGCTTACCTTTATGATGGTTACTGGGAAGGCATCGGTACTATAGAGG
EW720462       <-- GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EY933937       <-- GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EW717664       --> GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EX747192       --> GCAAGCTTACCTTTATGATGGTTACTGGGAAGACATCGGTACTATAGAGG
EX763312       --> GCAAGCTTACCTTTATGATGGTTACTGGGAAGATATCGGTACTATAGAGG

               1101   -   1151
UN17401        --> CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EY927606       <-- CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EW720462       <-- CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EY933937       <-- CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> CATTCTACAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EW717664       --> CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EX747192       --> CATTCTATAACGCAAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT
EX763312       --> CATTCTACAACGCGAATCTCGGAATCACCAAAAAACCGGTTCCTGATTTT

               1151   -   1201
UN17401        --> AGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- AGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACC
EY927606       <-- AGTTTCTATGATCGTTCTGCTCCGATCTACACACAGCCACGTTACCTACC
EW720462       <-- AGTTTCTATGACCGTTTTGCTCCAATCTACACACAGCCACGTTACCTACC
EY933937       <-- AGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACC
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> AGTTTCTATGATCGTTCTGCTCCGATCTACACACAGCCACGTTACCTACC
EW717664       --> AGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACC
EX747192       --> AGTTTCTATGACCGTTCTGCTCCAATCTACACACAGCCACGTTACCTACC
EX763312       --> AGTTTCTATGATCGTTCTGCTCCTATATACACACAGCCACGTTACCTACC

               1201   -   1251
UN17401        --> ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EY927606       <-- ACCGTCTAAGATGCTTGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EW720462       <-- ACCGTTTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EY933937       <-- ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EW717664       --> ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EX747192       --> ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG
EX763312       --> ACCGTCTAAGATGCTCGATGCTGATGTCACAGACAGTGTCATCGGAGAGG

               1251   -   1301
UN17401        --> GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTCGGACTCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTCGGACTCCGT  Raphanus raphanistrum subsp. maritimus
EY927606       <-- GGTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTTGGACTCCGT  Raphanus sativus var. oleiformis
EW720462       <-- GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTCGGACTCCGT  Raphanus sativus var. oleiformis
EY933937       <-- GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTTGGACTCCGT  Raphanus sativus cv Early Scarlet Globe
EY931723       --> ..................................................  Raphanus sativus var. oleiformis
EY937669       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD948892       --> GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTTGGACTCCGT  Raphanus sativus cv Early Scarlet Globe
EW717664       --> GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTCGGACTCCGT  Raphanus sativus var. oleiformis
EX747192       --> GCTGCGTTATCAAGAACTGCAAAATACATCACTCTGTGGTCGGACTCCGT  Raphanus raphanistrum subsp. maritimus
EX763312       --> GCTGCGTTATCAAGAACTGCAAAATACA......................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1301   -   1351
UN17401        --> TCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTTACTAATGGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- TCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTCACTAATGGGAGC
EY927606       <-- TCCTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTACTAATGGGAGC
EW720462       <-- TCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTTACTAATGGGAGC
EY933937       <-- TCCTGCATATCAGAAGGTGCTATCATTGAAGATTCGTTACTAATGGGAGC
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> TCCTGCATATCAGAGGGTGCTATTATTGAAGATTCGTTACTAATGGGAGC
EW717664       --> TCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTTACTAATGGGAGC
EX747192       --> TCCTGCATATCAGAAGGTGCTATAATTGAAGATTCGTCACTAATGGGAGC
EX763312       --> ..................................................

               1351   -   1401
UN17401        --> TGACTACTACGAGACTGCTTCGGAAAAGAGCCTCCTAACGGCGAAAGGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- TGACTACTACGAGACTGCCTCGGAAAAGAGCCTCCTAACGGCGAAAGGGA
EY927606       <-- TGACTACTACGAGACTGCTTCGGAAAAGAGCCTCCTAACCGCGAAAGGGA
EW720462       <-- TGACTACTACGAGACTGCTTCGGAAAAGAGCCTCCTAACGGCGAAAGGGA
EY933937       <-- TGACTACTACGAGACTGCTTCGGAAAAGAGCCTCCTAACCGCGAAAGGGA
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> TGATTACTACGAGACTGCTTCGGAAA-GAGCCTTCTAccgcg........
EW717664       --> TGACTACTACGAGACTGCTTCGGAAAAGAGCCTCCTAACGGCGAAAGGGA
EX747192       --> TGACTACTACGAGACTGCCTCGGAAAAGAGCCTCCTAACGGCGAAAGGGA
EX763312       --> ..................................................

               1401   -   1451
UN17401        --> GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EY927606       <-- GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EW720462       <-- GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EY933937       <-- GTGTTCCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EX747192       --> GTGTACCCATAGGTATCGGGAAAAACTCGCACATCAAAAGAGCCATCATT
EX763312       --> ..................................................

               1451   -   1501
UN17401        --> GACAAAAACGCACGTATCGGTGATAATGTCAAGATCATAAACAGCGACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- GACAAAAACGCACGTATCGGTGATAATGTCAAGACCATAAACAGCGACAA
EY927606       <-- GACAAAAACGCACGTATCGGTGACAATGTCAAGATCATAAACAGCGACAA
EW720462       <-- GACAAAAACGCACGTATCGGTGATAATGTCAAGATCATAAACAGCGACAA
EY933937       <-- GACAGAAACGCACGTATCGGTGACAATGTCAAGATCATAAACAGCGACAA
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> GACAAAAACGCACGTATCGGTGATAATGTCAAGATCATAAACAGCGACAA
EX747192       --> GACAAAAACGCACGTATCGGTGATAATGTCAAGACCATAAACAGCGACA-
EX763312       --> ..................................................

               1501   -   1551
UN17401        --> TGTGCAAGAGGCAGCGAGAGAGACTGAAGGATATTTCATAAAGAGTGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- TGTGCAAGAGGCAGCGAGAGAGACTGAAGGATATTTCATAAAGAGTGGAA
EY927606       <-- TGTGCAAGAGGCAGCGAGAGAGACGGAAGGATATTTCATAAAGAGTGGAA
EW720462       <-- TGTGCAAGAGGCAGTGAGAGAGACTGAAGGATATTTCATAAAGAGTGGAA
EY933937       <-- TGTGCAAGAGGCAGCGAGAGAGACTGAAGGATATTTCATAAAGAGTGGAA
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> TGTGCAAGAGGCAGTGAGAGAGACTGAAGGATATTTCATAAAGAGTGGAA
EX747192       --> TGTGCAAGAGGCAGCGAGAGAGACT.........................
EX763312       --> ..................................................

               1551   -   1601
UN17401        --> TTGTTACCGTTATCAAGGACGCCTTAATCCCAACGGGCACTCTTATCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- TCGTTACCGTTATCAAGGACGCCTTAATCCCAGCCGGCACTCTTATTTAA
EY927606       <-- TTGTTACCGTTATCAAGGACGCCTTAATCCCAACGGGCACTCTTATCTAA
EW720462       <-- TTGTTACCGTTATCAAGGACGCCTTAATCCCAACGGGCACTCTTATCTAA
EY933937       <-- TCGTTACCGTTATCAAGGACGCCTTAATCCCAAACGGCTCTCTTATCTAA
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> TTGTTACCGTTATCAAG-ACGCCTTAATCC-AACGGGCACTCTTATCTAA
EX747192       --> ..................................................
EX763312       --> ..................................................

               1601   -   1651
UN17401        --> ACACATACACATGCTCCCTTTTTTTCATATCTCTATAAACAGGGAAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- ACACATACACATGCTCCCTTTTTTTCATATCTCTATAAACAGGGAAAGAC
EY927606       <-- ACACATACACATGCTCCCTTTTTTTCATATCTCTATAAACAGGGAAAGAC
EW720462       <-- ACACATACACATGCTCCCTTTTTTTCATATCTCTATAAACACGGAAAGAC
EY933937       <-- ACACATACACATGCTCCCTTTTTT-CATATCTGTATAAACAGGGAAAGAC
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ACACATACACATGCTCCCTTTTTT-CATATCTCTATA.............
EX747192       --> ..................................................
EX763312       --> ..................................................

               1651   -   1701
UN17401        --> AAGACTTTGAGGATGTAAACGCCTGTGAAATTACTTAATCTAAATAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- AAGACTTTGAGGATGTAAACGCCTGTGAAATTACTTAATCTAAATAAGTT
EY927606       <-- AAGACTTTGAGGATGTAAACGCCTGTGAAATTACTTAATCTAAATAAGTT
EW720462       <-- AAGACTTTGAGGATGTAAACGCCTGTGAAATTACTTAATCTAAATAAGTT
EY933937       <-- A-GACTCTGAGGATGTAAACGCCTATGAAATAACTTAATCCAAATAAGTT
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               1701   -   1751
UN17401        --> CTCTAAGTCTACTTTATTCAACATCTGGTATACAAGCTATTTATATAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX751443       <-- CTCTAAGTCTACTTTATTCAACATCTGGTATACAAGCTATTTATATAAGT
EY927606       <-- CTCc..............................................
EW720462       <-- CTCg..............................................
EY933937       <-- CTCT..............................................
EY931723       --> ..................................................
EY937669       --> ..................................................
FD948892       --> ..................................................
EW717664       --> ..................................................
EX747192       --> ..................................................
EX763312       --> ..................................................

               1751   -   1801
UN17401        --> AAAGTTCAATCTTCGTCC
                   ~~~~~~~~~~~~~~~~~~
EX751443       <-- AAAGTTCAATCTTCGTCC
EY927606       <-- ..................
EW720462       <-- ..................
EY933937       <-- ..................
EY931723       --> ..................
EY937669       --> ..................
FD948892       --> ..................
EW717664       --> ..................
EX747192       --> ..................
EX763312       --> ..................