1      -     51
UN17445        --> GGATGAGAGAACAATTACTTGCATTTGAATTTCACGATTCATATAGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV548351       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- ..................................................  Raphanus sativus var. oleiformis
EX889931       <-- ..................................................  Raphanus sativus var. oleiformis
FD543715       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913835       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759517       --> GGATGAGAGAACAATTACTTGCATTTGAATGTCACAATTCATATAGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> .....AGACAACAATTACTTGCATTTGAATTTCAGAATTCATATAGGA-T  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> ....gggacAACAATTACTTGCATTTGAATTTCACAATTCATATAGGAAT  Raphanus sativus var. oleiformis
EV532834       --> ....................gctTTTGAATTTCACGATTCATATAGGAAT  Raphanus raphanistrum subsp. maritimus
EV544036       --> ....................gctTTTGAATTTCACGATTCATATAGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> ..........................GAATTTCACGATTCATATAGGAAT  Raphanus raphanistrum subsp. maritimus

               51     -    101
UN17445        --> GATCCTTGAGTTATATTACACAACGCAAGCAAGCCGTAAAAAGGAGATAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- .............TATTACACAACGCAAGCAAGCCGT---AAGGAAATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- ........................................AAGGAGATAC  Raphanus raphanistrum subsp. maritimus
EV548351       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- ..................................................  Raphanus sativus var. oleiformis
EX889931       <-- ..................................................  Raphanus sativus var. oleiformis
FD543715       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913835       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759517       --> GATCCTTGAGTTACATTACACAACGCAAGCAAGCCGTAA---GGAAATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> GATCCTTGAGTTATATTACACAACGCAAGCAAGCCGTAAAAAGGAGATAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> GATCCTTGAGTTATATTACACAACGCAAGCAAGCCGTAAAAAGGAAATAC  Raphanus sativus var. oleiformis
EV532834       --> GATCCTTGAGTTATATTACACAGCGCAAGCTAGGCGTAAAAAGGAGATAC  Raphanus raphanistrum subsp. maritimus
EV544036       --> GATCCTTGAGTTATATTACACAGCGCAAGCTAGGCGTAAAAAGGAGATAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> GATCCTTGAGTTATATTACACAGCGCAAGCTAGGCGTAAAAAGGAGATAC  Raphanus raphanistrum subsp. maritimus

               101    -    151
UN17445        --> ATAGATATTGGCTT-CGAAGTGTGATAAGCCC-TTT-CAGGAAGAAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- ATAGATATTGGCTTTCGAAGTGTGATAAGCCCCTTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- ATAGATATTGGCTT-CGAAGTGAGATAAGCCC-TTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. maritimus
EV548351       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- ..................................................  Raphanus sativus var. oleiformis
EX889931       <-- ..................................................  Raphanus sativus var. oleiformis
FD543715       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY913835       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- ..................................................  Raphanus sativus cv GSK3-1
EX759517       --> ATAGATATTGGCTTTCGAAGTGTGATAAGCCCCTTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> ATAGATATTGGCTTTCGAAGTGTGATAAGCCC-TTTTCAGGAAGAAGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> ATAGATATTGGCTT-CGAAGTGTGATAAGCCC-TTT-CAGGAAGAAGAGC  Raphanus sativus var. oleiformis
EV532834       --> ATAGATATTGGCTT-CGAAGTGAGATAAGCCC-TTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. maritimus
EV544036       --> ATAGATATTGGCTT-CGAAGTGAGATAAGCCC-TTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> ATAGATATTGGCTT-CGAAGTGAGATAAGCCC-TTT-CAGGAAGAAGAGC  Raphanus raphanistrum subsp. maritimus

               151    -    201
UN17445        --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGTAGTAGCGACATCGATT
EV528981       <-- AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT
EV548351       <-- ..............................agaCAGCAGCGACATCGATT
EX888080       <-- ..................................................
EX889931       <-- ..................................................
FD543715       <-- ..................................................
EY897936       <-- ..................................................
EY913835       <-- ..................................................
EX755435       <-- ..................................................
FY432048       <-- ..................................................
EX759517       --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGTAGTAGCGACATCGATT
FD539491       --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT
EX893557       --> AACAAGGCTTCTTAGTGTTTGATTCAAAAGAGGCAGCAGCGACATCGATT
EV532834       --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT
EV544036       --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT
EY894125       --> AACAAGGCTTCTTAGTGTTTGATTCAGAAGAGGCAGCAGCGACATCGATT

               201    -    251
UN17445        --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGCTAT
EV528981       <-- GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EV548351       <-- GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EX888080       <-- ................CGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EX889931       <-- ................CGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
FD543715       <-- ................CGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EY897936       <-- .............................................GATAT
EY913835       <-- ..................................................
EX755435       <-- ..................................................
FY432048       <-- ..................................................
EX759517       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGCTAT
FD539491       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EX893557       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EV532834       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EV544036       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT
EY894125       --> GTTTGACCTTCCCTGACGTTACCATTTGCATCTGCCTGGTCCGAAGATAT

               251    -    301
UN17445        --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EV528981       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EV548351       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EX888080       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCCGAGAGAATCGTCTGAAAGG
EX889931       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCCGAGAGAATCGTCTGAAAGG
FD543715       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EY897936       <-- CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EY913835       <-- .................................GAGAATCGTCTGAAAGG
EX755435       <-- ..................................................
FY432048       <-- ..................................................
EX759517       --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
FD539491       --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EX893557       --> CGATTTCTTGCTGATGATCCTGTAAATCTCCGAGAGAATCGTCTGAAAGG
EV532834       --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EV544036       --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAGAGAATCGTCTGAAAGG
EY894125       --> CGATTTCTTGCTGATGATCCTGTAAATCTCAGAAAGAATCGTCTGAAAGG

               301    -    351
UN17445        --> CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- CCTTCTCCACGTTCAGCGCCTCGAGGGCCGACGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. maritimus
EV548351       <-- CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- CCTTCTCCACGTTCAGCGCCTCGAGAGCCGACGTCTCGATGAAAGACAAG  Raphanus sativus var. oleiformis
EX889931       <-- CCTTCTCCACGTTCAGCGCCTCGAGAGCCGACGTCTCGATGAAAGACAAG  Raphanus sativus var. oleiformis
FD543715       <-- CCTTCTCCACGTTCAACGCCTCGAGAGCCGAGGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- CTTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. maritimus
EY913835       <-- CCTTCTCCACGTTCAGCGCCTC-AGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- ...............................cGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- ..........................................AAGACAAG  Raphanus sativus cv GSK3-1
EX759517       --> CCTTCTCCACGTTCAGCGCCTCGAGGGCCGACGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> CCTTCTCCACGTTCAACGCCTCGAGAGCCGAGGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> CCTTCTCCACGTTCAGCGCCTCGAGAGCCGACGTCTCGATGAAAGACAAG  Raphanus sativus var. oleiformis
EV532834       --> CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. maritimus
EV544036       --> CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> CCTTCTCCACGTTCAGCGCCTCGAGAGCCGATGTCTCGATGAAAGACAAG  Raphanus raphanistrum subsp. maritimus

               351    -    401
UN17445        --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCGACAGCTCTGAG
EV528981       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EV548351       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EX888080       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EX889931       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
FD543715       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EY897936       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EY913835       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EX755435       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCGACAGCTCTGAG
FY432048       <-- CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EX759517       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCGACAGCTCTGAG
FD539491       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EX893557       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAA
EV532834       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAG
EV544036       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAA
EY894125       --> CCTTCTTTCTCGGCGAAGCTCTGAGCATCCTCCGTGGCAACAGCTCTGAA

               401    -    451
UN17445        --> ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- ATGCTTCAGATCCGTCTTGTTCCCGATCAACATGATGACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. maritimus
EV548351       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus sativus var. oleiformis
EX889931       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus sativus var. oleiformis
FD543715       <-- ATGCTTCAGATCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. maritimus
EY913835       <-- ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- ATGCTTCAGATCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- ATGCTTCAGATCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus sativus cv GSK3-1
EX759517       --> ATGCTTCAGATCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> ATGCTTCAGATCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATGACGATGTTGGAAT  Raphanus sativus var. oleiformis
EV532834       --> ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. maritimus
EV544036       --> ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> ATGCTTCAGGTCCGTCTTGTTTCCGATCAACATGATCACGATGTTGGAAT  Raphanus raphanistrum subsp. maritimus

               451    -    501
UN17445        --> CCGCATGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- CCGCGTGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. maritimus
EV548351       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCAAACGTT  Raphanus sativus var. oleiformis
EX889931       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCGGCCAACGTTCTCAAACGTT  Raphanus sativus var. oleiformis
FD543715       <-- CCGCGTGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCAAACGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. maritimus
EY913835       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- CCGCGTGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- CCGCATGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTT  Raphanus sativus cv GSK3-1
EX759517       --> CCGCGTGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> CCGCGTGGTCTCTGAGCTCTTTCAACCACCGGCTAACGTTCTCAAACGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> CCGCATGGTCTCTGAGCTCTTTCAACCACCGGCCAACGTTCTCAAACGTT  Raphanus sativus var. oleiformis
EV532834       --> CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. maritimus
EV544036       --> CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> CCGCATGGTCTCTGAGCTCTTTCAACCACCTGCTAACGTTCTCGAACGTT  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN17445        --> GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCAAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. maritimus
EV548351       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- GTTGGTTTAGTGACGTCGTAAACCAAGAGAGCACCATGGGCACCTCTGTA  Raphanus sativus var. oleiformis
EX889931       <-- GTTGGTTTAGTGACGTCGTAAACCAAGAGAGCACCAAGGGCACCTCTGTA  Raphanus sativus var. oleiformis
FD543715       <-- GTTGGTTTAGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. maritimus
EY913835       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCAAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- GTTGGTTTAGTGACGTCGTAGACCAAGAGAGCACCGAGCGCGCCTCTGTA  Raphanus sativus cv GSK3-1
EX759517       --> GTTGGTTTCGTGACGTCGTAAACCAAGAGAGCACCAAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> GTTGGTTTAGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> GTTGGTTTAGTGACGTCGTAAACCAAGAGAGCACCAAGGGCACCTCTGTA  Raphanus sativus var. oleiformis
EV532834       --> GTTGGTTTCGTGACGTCGTAGACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. maritimus
EV544036       --> GTTGGTTTCGTGACGTCGTAAACCAAGAGAGCACCGAGCGCACCTCTGTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> GTTGGTTTCGTGACGTCGTA..............................  Raphanus raphanistrum subsp. maritimus

               551    -    601
UN17445        --> GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EV528981       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EV548351       <-- GTAGGAGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EX888080       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCGCAGCCGTGTCCCATA
EX889931       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
FD543715       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EY897936       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EY913835       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EX755435       <-- GTAGGCGCTGGTTATGGCTCTGTATAGTTCTTGCCCAGCCGTGTCCCATA
FY432048       <-- GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCGGTGTCCCATA
EX759517       --> GTAGGCGCTGGTTATGGCTCTGTATAGTTCTTGCCCAGCCGTGTCCCATA
FD539491       --> GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EX893557       --> GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EV532834       --> GTAGGCGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EV544036       --> GTAGGAGCTGGTTATGGCTCTGTATCGTTCTTGCCCAGCCGTGTCCCATA
EY894125       --> ..................................................

               601    -    651
UN17445        --> TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- TCTGAGCCTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EV528981       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EV548351       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EX888080       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EX889931       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
FD543715       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTACGAGTAGCGAAT
EY897936       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EY913835       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EX755435       <-- TCTGAGCCTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
FY432048       <-- TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EX759517       --> TCTGAGCCTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
FD539491       --> TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTACGAGTAGCGAAT
EX893557       --> TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EV532834       --> TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EV544036       --> TCTGCGCTTTCACAGTCCTTCCTTCCACTTGGAGAGTGCGAGTAGCGAAT
EY894125       --> ..................................................

               651    -    701
UN17445        --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EV528981       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EV548351       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EX888080       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EX889931       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
FD543715       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EY897936       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGGGAGTGAA
EY913835       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EX755435       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
FY432048       <-- TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EX759517       --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
FD539491       --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EX893557       --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EV532834       --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EV544036       --> TCGACACCGATGGTAGATTTGGATTCCAAGCAGAACTCGTCGCGAGTGAA
EY894125       --> ..................................................

               701    -    751
UN17445        --> TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV528981       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. maritimus
EV548351       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX888080       <-- TCTAGAGAGGAGATTCGACTTGCCGACGCCGGAGTCTCCGATGAGAACCA  Raphanus sativus var. oleiformis
EX889931       <-- TCTAGAGAGGAGATTCGACTTGCCGACGCCGGAGTCTCCGATGAGAACCA  Raphanus sativus var. oleiformis
FD543715       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAATCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY897936       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. maritimus
EY913835       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX755435       <-- TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY432048       <-- TCTAGAGAGGAGATTCGACTTGCCGACGCCGGAGTCTCCGATGAGAACCA  Raphanus sativus cv GSK3-1
EX759517       --> TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539491       --> TCTAGAGAGGAGATTCGACTTGCCGACACCGGAATCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX893557       --> TCTAGAGAGGAGATTCGACTTGCCGACGCCGGAGTCTCCGATGAGAACCA  Raphanus sativus var. oleiformis
EV532834       --> TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. maritimus
EV544036       --> TCTAGAGAGGAGATTCGACTTGCCGACACCGGAGTCTCCGATGAGAACCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY894125       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               751    -    801
UN17445        --> CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EV528981       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EV548351       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EX888080       <-- CTTTAAACAAGTAGTCGTATTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EX889931       <-- CTTTAAACAAGTAGTCGTATTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
FD543715       <-- CTTTAAACAAGTAGTCGTATTCTTCTTCCGGTCTTCTCGCCATTGTTAGA
EY897936       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGTCATTGTTAAA
EY913835       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EX755435       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
FY432048       <-- CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATTGTTAAA
EX759517       --> CTTTAAACAAGTAGTCGTACTCTTCTTCCGGTCTTCTCGCCATg......
FD539491       --> CTTTAAACAAGTAG....................................
EX893557       --> C.................................................
EV532834       --> CTTTAAACAAGTAGTCGTACTCT...........................
EV544036       --> CTTTAAACAAGTAGTCGTACTCTT..........................
EY894125       --> ..................................................

               801    -    851
UN17445        --> ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV535766       <-- ACCCTTTCTTTTTTT-CTTTTTT--TCTGGAGAAGAGCGTGATTGGGATT
EV528981       <-- ACCCTTTCTTTTTTTTCTTTTTTTT-CTGGAGAAGc..............
EV548351       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGcc..
EX888080       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGGATT
EX889931       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGGATT
FD543715       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTcc....
EY897936       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGGGATT
EY913835       <-- ACCCTTTCTTTTTTTTCTTTTTTTTTCTGGAGAAGAGCGTGATTGc....
EX755435       <-- ACCCTTTCTTTTTTT-CTTTTTT--TCTGGAGAAGAGCGTGATTGGGATT
FY432048       <-- ACCCTTTCTTTTTTTTtctgagaagagc......................
EX759517       --> ..................................................
FD539491       --> ..................................................
EX893557       --> ..................................................
EV532834       --> ..................................................
EV544036       --> ..................................................
EY894125       --> ..................................................

               851    -    901
UN17445        --> TTCAAAACTGAGTGCC
                   ~~~~~~~~~~~~~~~~
EV535766       <-- TTCAAAACTGAGTGC.
EV528981       <-- ................
EV548351       <-- ................
EX888080       <-- TTCAAAAa........
EX889931       <-- TTCcc...........
FD543715       <-- ................
EY897936       <-- TTCcc...........
EY913835       <-- ................
EX755435       <-- TTCAAAACTGAGTGCC
FY432048       <-- ................
EX759517       --> ................
FD539491       --> ................
EX893557       --> ................
EV532834       --> ................
EV544036       --> ................
EY894125       --> ................