1      -     51
UN17486        --> AATTTGCACCATCCATCCCTGAGAAGAACATCACTTGTTTGACAAGGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- AATTTGCACCATCCATCCCTGAGAAGAATATCACTTGTTTGACAAGGCTG
EY936933       <-- ......................GAAGAACATCACTTGTTTGACAAGGCTT
FD528657       <-- ......................GAAGAACATCACTTGTTTGACAAGGCTT
FD573603       <-- ......................GAAGAACATCACTTGTTTGACAAGGCTT
EY911604       <-- ..................................................
EY936259       <-- ..................................................
EV538999       --> ..................................................

               51     -    101
UN17486        --> GACCACAACAGGGCCTTGGGTCAGATCTCTGAGAGGTTGAGCGTGCCTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GACCACAACAGGGCCTTGGGTCAGATCTCTGAGAGGTTGAGCGTGCCCGT
EY936933       <-- GACCACAACAGGGCCTTGGGTCAGATCTCTGAGAGGTTGAGCGTGCCTGT
FD528657       <-- GACCACAACAGGGCCTTGGGTCAGATCTCTGAGAGGTTGAGCGTGCCTGT
FD573603       <-- GACCACAACAGGGCCTTGGGTCAGATCTCTGAGAGGTTGAGCGTGCCTGT
EY911604       <-- ..................................................
EY936259       <-- ..................................................
EV538999       --> ..................................................

               101    -    151
UN17486        --> CTCTGATGTTAAGAACGTGATCATCTGGGGTAACCACTCATCCACGCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- CTCTGATGTTAAGAACGTGATCATCTGGGGTAACCACTCATCCACACAGT
EY936933       <-- CTCTGATGTTAAGAACGTGATCATCTGGGGTAACCACTCATCCACGCAGT
FD528657       <-- CTCTGATGTTAAGAACGTGATCATCTGGGGTAACCACTCATCCACGCAGT
FD573603       <-- CTCTGATGTTAAGAACGTGATCATCTGGGGTAACCACTCATCCACGCAGT
EY911604       <-- ..........................GGGGTAACCACTCATCCACACAGT
EY936259       <-- ..................................................
EV538999       --> .............................................GCAGT

               151    -    201
UN17486        --> ACCCTGATGTCAACCACGCTAAGGTGCAGACTTCGTCTGGAGAAAAGCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- ACCCTGATGTCAACCACGCTAAGGTGCAGACTTCATCTGGAGAAAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- ACCCTGATGTCAACCACGCTAAGGTGCAGACTTCGTCTGGAGAAAAGCCT  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- ACCCTGATGTCAACCACGCTAAGGTGCAGACTTCGTCTGGAGAAAAGCCT  Raphanus raphanistrum subsp. maritimus
FD573603       <-- ACCCTGATGTCAACCACGCTAAGGTGCAGACCTCGTCTGGAGAAAAGCCT  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- ACCCTTATGTCAACCACGCTAAGGTGCAGACTTCATCTGGAGAAAAACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538999       --> ACCCTGATGTCAACCACACTAAGGTGCAGACTTCATCTGGAGAAAAGCCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN17486        --> GTCCGTGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GTCCGCGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- GTCCGTGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCGC  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- GTCCGTGAGCTCGTCAAGAACGATGAGTGGTTGAATGGGGAGTTCATCAC  Raphanus raphanistrum subsp. maritimus
FD573603       <-- GTCCGTGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCAC  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- GTCCGCGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCAC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538999       --> GTCCGCGAGCTCGTCAAGAACGATGAGTGGTTGAATGGAGAGTTCATCAC  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN17486        --> TACGGTTCAGCAACGTGGAGCTGCAATCATCAAGGCCAGGAAGTTGTCTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- TACGGTTCAATAACGTGGAGCTGCAATCATCAAAGCGAGGAAATTGTCTA
EY936933       <-- TACGGTTCAGCAACGTGGAGCTGCAATCATCAAGGCCAGGAAGTTGTCTA
FD528657       <-- TACGGTTCAGCAACGTGGAGCTGCAATCATCAAGGCCAGGAAGTTGTCTA
FD573603       <-- TACGGTTCAGCAACGTGGAGCTGCAATCATCAAGGCCAGGAAGTTGTCTA
EY911604       <-- TACGGTTCAGCAACGTGGAGCTGCAATCATCAAGGCCAGGAAGTTGTCTA
EY936259       <-- ..................................................
EV538999       --> TACGGTTCAACAACGTGGAGCTGCAATCATCAAAGCGAGGAAATTGTCTA

               301    -    351
UN17486        --> GTGCACTTTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GTGCACTTTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- GTGCACTCTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- GTGCACTTTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus raphanistrum subsp. maritimus
FD573603       <-- GTGCACTCTTTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- GTGCACTCTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EV538999       --> GTTCACTTTCTGCTGCTAGCTCTGCATGTGACCACATCCGTGACTGGGTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN17486        --> CTTGGAACTCCAGAGGGGACATTTGTTTCCATGGGAGTATACTCAGATGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- CTTGGAACTCCAGAGGGGACATTTGTTTCCATGGGAGTATACTCAGATGG
EY936933       <-- CTTGGAACTCCAGAGGAGACATTTGTTTCCATGGGAGTATACTCAGATGG
FD528657       <-- CTTGGAACTCCAGAGGAGACATTTGTTTCCATGGGAGTATACTCAGATGG
FD573603       <-- CTTGGAACTCCAGAGGGGACATTTGTTTCCATGGGAGTATACTCAGATGG
EY911604       <-- CTTGGAACTCCAGAGGGGACATTTGTCTCCATGGGAGTATACTCAGATGG
EY936259       <-- ..................................................
EV538999       --> CTTGGAACTCCAGAGGGGACATTTGTTTCCATGGGAGTATACTCAGATGG

               401    -    451
UN17486        --> CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGCC  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGCC  Raphanus raphanistrum subsp. maritimus
FD573603       <-- CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGCC  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- CTCTTACAACGCTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- ..........................TCTACTCCTTCCCTGTCGCTTGCC  Raphanus sativus cv Early Scarlet Globe
EV538999       --> CTCTTACAACGTTCCATCAGGACTTATCTACTCCTTCCCTGTCACTTGTC  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN17486        --> GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCTGATCGATGAAGTATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCCGATCGATGAAGTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCTGATCGATGAAGTATCA  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCTGATCGATGAAGTATCA  Raphanus raphanistrum subsp. maritimus
FD573603       <-- GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCTGATCGATGAAGTATCA  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- GCAACGGAGAGTGGAGTATTGTCCAAGGGCTTCCGATCGATGAAGTATCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCTGATCGATGAAGTATCA  Raphanus sativus cv Early Scarlet Globe
EV538999       --> GCAATGGAGAGTGGAGTATTGTCCAAGGGCTTCCGATCGATGAAGTATCA  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN17486        --> AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- AGGAAGAAGATGGATCTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
EY936933       <-- AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
FD528657       <-- AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
FD573603       <-- AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
EY911604       <-- AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
EY936259       <-- AGGAAGAAGATGGATTTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT
EV538999       --> AGGAAGAAGATGGATCTGACTGCAGAGGAGCTGAAGGAAGAGAAGGACTT

               551    -    601
UN17486        --> GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
EY936933       <-- GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
FD528657       <-- GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
FD573603       <-- GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTTTCAGTCAGGTGT
EY911604       <-- GGCCTATTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
EY936259       <-- GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT
EV538999       --> GGCCTACTCATGCCTCTCTTAAACCAATACTCTTCTTCTCAGTCAGGTGT

               601    -    651
UN17486        --> GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
EY936933       <-- GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
FD528657       <-- GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
FD573603       <-- GGGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
EY911604       <-- GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTG--TTTAAA
EY936259       <-- GGGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA
EV538999       --> GAGATCAACAAAGCTTTGAGGGCTTTGTTGAAATAAAGAGTGTGTTTAAA

               651    -    701
UN17486        --> AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCCGTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCTGTTTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY936933       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCCGTTTTTT  Raphanus sativus cv Early Scarlet Globe
FD528657       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCCGTTTTTT  Raphanus raphanistrum subsp. maritimus
FD573603       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCCGCTTTTT  Raphanus sativus cv Early Scarlet Globe
EY911604       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCTTTTTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936259       <-- AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCCGTTTTTT  Raphanus sativus cv Early Scarlet Globe
EV538999       --> AGATCTCCCAAACACTGTCCCTGCGCTGATATTCATGTACTCTGTTTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN17486        --> CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAA-CAACTTTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX760775       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAATAAAA-CAACTTTTA
EY936933       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAA-CAACTTTTA
FD528657       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAA-CAACTTTTA
FD573603       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAA-CAACTTTTA
EY911604       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAAACAACTTTTA
EY936259       <-- CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAA-AAAA-CAACTTTTA
EV538999       --> CTTTGTGTCTGATTTGGTTTACCCATAGTAATAAATAAAA-CAACTTTTA

               751    -    801
UN17486        --> CT
                   ~~
EX760775       <-- CT
EY936933       <-- CT
FD528657       <-- C.
FD573603       <-- Cg
EY911604       <-- CT
EY936259       <-- C.
EV538999       --> CT