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Alignment for radish unigene UN17487

               1      -     51
UN17487        --> GAGAGGGTTTGGTTTTGTTGCTTTCTCCAGTCCTGAAGAAGCTTTGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ..................................................
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> GAGAGGGTTTGGTTTTGTTGCTTTCTCCAGTCCTGAAGAAGCTTTGAGAG
FD939075       --> ..................................................
FD532840       --> ..................................................
EY900067       --> ..................................................
EV538175       --> ..................................................
FD962292       --> ..................................................

               51     -    101
UN17487        --> CTTTGAATGAAATGAATGGGAAGATGATAGGAAGGAAACCTCTTTACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ..................................................
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> CTTTGAATGAAATGAATGGGAAGATGATAGGAAGGAAACCTCTTTACATT
FD939075       --> ...................GAAGATGATAGGAAGGAAACCTCTTTACATT
FD532840       --> ..................................................
EY900067       --> ..................................................
EV538175       --> ..................................................
FD962292       --> ..................................................

               101    -    151
UN17487        --> GCATTTGCTCAACGCAAGGAAGAGAGGAGGACTCATCTTCAGACTGTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ..................................................
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> GCATTTGCTCAACGCAAGGAAGAGAGGAGGACTCATCTTCAGACTGTGTT
FD939075       --> GCATTTGCTCAACGCAAGGAAGAGAGGAGGACTCATCTTCAGACTGTGTT
FD532840       --> ....gTGCTCAACGCAAGGAAGAGAGGAGGACTCATCTTCAGACTGTGTT
EY900067       --> ...............................gTCATCTTCAGACTGTGTT
EV538175       --> ..................................................
FD962292       --> ..................................................

               151    -    201
UN17487        --> TTCTATGAGACCAAATGTACCAATGGGTGGGTTTCATCATCACCCAACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ..................................................
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> TTCTATGAGACCAAATGTACCAATGGGTGGGTTTCATCATCACCCAACAG
FD939075       --> TTCTATGAGACCAAATGTACCAATGGGTGGGTTTCATCATCACCCAACAG
FD532840       --> TTCTATGAGACCAAATGTACCAATGGGTGGGTT-C-T-ATCACCCAACAG
EY900067       --> TTCTATGAGACCAAATGTACCAATGGGTGGGTT-C--CATCACCCAACAG
EV538175       --> ..................................................
FD962292       --> ..................................................

               201    -    251
UN17487        --> GAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ..................................................
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> GAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGT
FD939075       --> GAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGT
FD532840       --> GAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGT
EY900067       --> GAGGGCCAGCTGGAGGGCCACACCATCAAATGTACATGGGCCAGAACGGT
EV538175       --> ..................................................
FD962292       --> ..................................................

               251    -    301
UN17487        --> CAAGGTATGGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- .................ACAGCCTATGGGGTATGGGTACCAACTTCAGTT
FD544913       <-- ..................................................
EX893996       <-- ..................................................
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> CAAGGTATGGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTT
FD939075       --> CAAGGTATGGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTT
FD532840       --> CAAGGTATGGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTT
EY900067       --> CAAGGTATGGTGCCTTCACAGCCTATGGGGTATGGGTACCAACTTCAGTT
EV538175       --> ..................................................
FD962292       --> ..................................................

               301    -    351
UN17487        --> CATGCCTGGTGTGCGTCCGGGTGCTGGCCCGGCTAACTACATGATGCCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- CATGCCTGGTGTGCGTCCGGGTGCTGGCCCGGCTAACTACATGATGCCTT
FD544913       <-- .........TGTGCGTCCGGGTTCTGGCCCGGCTAACTACATGATGCCTT
EX893996       <-- .........gGTGCGTCCGGGTGCTGGCCCGGCTAACTACATGATGCCTT
EX766880       <-- ..................................................
EY895708       <-- ..................................................
EV542248       <-- ..................................................
EW721142       <-- ..................................................
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> CATGCCTGGGGTGCGTCCGGGTGCTGGCCCGGCTAACTACATGATGCCTT
FD939075       --> CATGCCTGGGGTGCGTCCGGGTGCTGGCCCGGCTAACTAC-TGATGCCTT
FD532840       --> CATGCCTGGTGTGCGTCCGGGTGCTGGACCGGCTAACTACATTATGCCTT
EY900067       --> CGTGCCTGGTGTGCGTCCGGGTGCTGGACCGGCTAACTACATGATGCCTT
EV538175       --> ..................................................
FD962292       --> ..................................................

               351    -    401
UN17487        --> ACCCTCTTCAGAGGCAAAACCATCCTGGTCCCCGTGTTGGATTCAGGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ACCCTCTTCAGAGGCAAAACCACCCTGGTCCCCGTGTTGGGTTCAGGCGT  Raphanus sativus var. oleiformis
FD544913       <-- ACCCACTTCAGAGGCAAAACCATCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- ACCCTCTTCAGAGGCAAAACCACCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus sativus var. oleiformis
EX766880       <-- ACCCACTTCAGAGGCAAAACCATCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV542248       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- ..................................................  Raphanus sativus var. oleiformis
FD935283       <-- ..................................................  Raphanus sativus var. oleiformis
FD943611       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX890490       --> ACCCTCTTCAGAGGCAAAACCACCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus sativus var. oleiformis
FD939075       --> ACCCTCTTCAGAGGCAAAACCACCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus sativus var. oleiformis
FD532840       --> ACCTTCTTCAGAGGCAAACCCATCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus raphanistrum subsp. maritimus
EY900067       --> ACCCTCTTCAGAGGCAAACCCATCCTGGTCCCCGTGTTGGATTCAGGCGT  Raphanus raphanistrum subsp. maritimus
EV538175       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               401    -    451
UN17487        --> GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCCACAAATTATGCA
FD544913       <-- GGTGCTCCTAACATGCAGCATCACTTCCAGCAGCAGCAACAAATTATGCA
EX893996       <-- GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
EX766880       <-- GGTGCTCCTAACATGCAGCATCACTTCCAGCAGCAGCAACAAATTATGCA
EY895708       <-- .....TCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
EV542248       <-- ...............................gGCAGCAACAAATTATGCA
EW721142       <-- ....................................ccACAAATTATGCA
FD935283       <-- ..................................................
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
FD939075       --> GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
FD532840       --> GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
EY900067       --> GGTGCTCCTAACATGCAGCACCACTTCCAGCAGCAGCAACAAATTATGCA
EV538175       --> ...............................gGCAGCAACAAATTATGCA
FD962292       --> ..................................................

               451    -    501
UN17487        --> GCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- GCACAATGGAAGATATATGGGAGGTGTGGGTAATATGATGAATCGTGTGG  Raphanus sativus var. oleiformis
FD544913       <-- GCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- GCACAATGGAAGATACTTGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus sativus var. oleiformis
EX766880       <-- GCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- GCACAATGGAAGATACCTGGGAGGTGTGGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. maritimus
EV542248       <-- GCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- GCACAATGGAAGATATATGGGAGGTGTGGGTAATATGATGAATCGTGTGG  Raphanus sativus var. oleiformis
FD935283       <-- ..................................................  Raphanus sativus var. oleiformis
FD943611       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX890490       --> GCACAATGGAAGATACTTGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus sativus var. oleiformis
FD939075       --> GCACAATGGAAGATACTTGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus sativus var. oleiformis
FD532840       --> GCACAATGGAAGATACCTGGGAGGTGTGGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. maritimus
EY900067       --> GCACAATGGAAGATACCTGGGAGGTGTGGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. maritimus
EV538175       --> GCACAATGGAAGATACATGGGAGGTGTTGGTAATATGATGAATCGTGTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               501    -    551
UN17487        --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
FD544913       <-- AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EX893996       <-- AAGCATTTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EX766880       <-- AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EY895708       <-- AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EV542248       <-- AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EW721142       <-- AAGCATTTGCTCCACAAGGCATCATACCATTGGATGCTTCTGCGATCTCT
FD935283       <-- .........................................GCGATCTCT
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
FD939075       --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
FD532840       --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EY900067       --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
EV538175       --> AAGCATCTGCTCCACAAGGCATCATACCATTGGATGCATCTGCGATCTCT
FD962292       --> ..................................................

               551    -    601
UN17487        --> CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- CACAATGCTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTTTAA
FD544913       <-- CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EX893996       <-- CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTTTAA
EX766880       <-- CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EY895708       <-- CACAATGGTTCTCAAAATCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EV542248       <-- CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EW721142       <-- CACAATGCTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
FD935283       <-- CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
FD943611       <-- ..................................................
FD958872       <-- ..................................................
EX890490       --> CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
FD939075       --> CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
FD532840       --> CACAATGGTTCTCAAAATCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EY900067       --> CACAATGGTTCTCAAAATCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
EV538175       --> CACAATGGTTCTCAAAACCAACAGAGGCCAGCTCTCCTCCCCATTTCTAA
FD962292       --> ..................................................

               601    -    651
UN17487        --> GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCACAGATTC  Raphanus sativus var. oleiformis
FD544913       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus sativus var. oleiformis
EX766880       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- GCTTACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCACAGATTC  Raphanus raphanistrum subsp. maritimus
EV542248       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCACAGATTC  Raphanus sativus var. oleiformis
FD935283       <-- GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATCC  Raphanus sativus var. oleiformis
FD943611       <-- ........................................gCGCAGATTC  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EX890490       --> GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus sativus var. oleiformis
FD939075       --> GCTCACTTCTGCCTTGGCATTGGCTA........................  Raphanus sativus var. oleiformis
FD532840       --> GCTTACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCACAGATTC  Raphanus raphanistrum subsp. maritimus
EY900067       --> GCTTACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCACAGATTC  Raphanus raphanistrum subsp. maritimus
EV538175       --> GCTCACTTCTGCCTTGGCATTGGCTAGCCCTGCCAATCACTCGCAGATTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> ..................................................  Raphanus raphanistrum subsp. maritimus

               651    -    701
UN17487        --> TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
FD544913       <-- TTGGAGAGCAGCTTTCCCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
EX893996       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
EX766880       <-- TTGGAGAGCAGCTTTACCCACTCGTGGAAAAGCAGGAGCCAGTTCATGTG
EY895708       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCGGTTCATGTG
EV542248       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
EW721142       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
FD935283       <-- TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
FD943611       <-- TTGGAGGGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
FD958872       <-- ..................gACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
EX890490       --> TTGGAGAGCAGCTTTACCCACTTGTGGAAAA...................
FD939075       --> ..................................................
FD532840       --> TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
EY900067       --> TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCGGTTCATGTG
EV538175       --> TTGGAGAGCAGCTTTACCCACTTGTGGAAAAGCAGGAGCCAGTTCATGTG
FD962292       --> ..................gACTTGTGGAAAAGCAGGAGCCAGTTCATGTG

               701    -    751
UN17487        --> GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- GCCAAAGTGACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
FD544913       <-- GCCAAAGTTACAGGGATGCTGCTGGAGATGGACCAAGCTGAGATCATGCA
EX893996       <-- GCCAAAGTTAACGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EX766880       <-- GCCAAAGTTACAGGGATGCTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EY895708       <-- GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EV542248       <-- GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EW721142       <-- GCCAAAGTGACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
FD935283       <-- GCCAAAGTTACCGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
FD943611       <-- GCCAAAGTTACCGGGATGTTGCTGGAGACGGACCAAGCTGAGATCTTGCA
FD958872       <-- GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EX890490       --> ..................................................
FD939075       --> ..................................................
FD532840       --> GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EY900067       --> GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
EV538175       --> GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA
FD962292       --> GCCAAAGTTACAGGGATGTTGCTGGAGATGGACCAAGCTGAGATCTTGCA

               751    -    801
UN17487        --> CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG  Raphanus sativus var. oleiformis
FD544913       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTTTGG  Raphanus sativus var. oleiformis
EX766880       <-- CCTCCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. maritimus
EV542248       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG  Raphanus sativus var. oleiformis
FD935283       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGTTTTGG  Raphanus sativus var. oleiformis
FD943611       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTTTGG  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> CCTTCTTGAGTCACCTGAAGCTCTTAAAGCCAAAGTGGCTATGGCTC...  Raphanus raphanistrum subsp. maritimus
EY900067       --> CCTTCTTGAGTCACCTGAAGCTCTTAAAGCCAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. maritimus
EV538175       --> CCTTCTTGAGTCACCTGAAGCTCTTAAGGCTAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> CCTTCTTGAGTCACCTGAAGCTCTTAAGGCCAAAGTGGCTATGGCTCTGG  Raphanus raphanistrum subsp. maritimus

               801    -    851
UN17487        --> ATGTACTCAGGCTCTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ATGTACTCAGGCTTTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus sativus var. oleiformis
FD544913       <-- ATGTACTCAGGCTCTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- ATGTACTCAGGCTCTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus sativus var. oleiformis
EX766880       <-- ATGTACTCAGGCTCTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- ATGTACTCAGGCTTTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. maritimus
EV542248       <-- ATGTACTCAGGCTCTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- ATGTACTCAGGCTCTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus sativus var. oleiformis
FD935283       <-- ATGTACTCAGGCTTTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus sativus var. oleiformis
FD943611       <-- ATGTACTCAGGCTTTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- ATGTACTCAGGCTTTTTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900067       --> ATGTACTCACGCTCTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. maritimus
EV538175       --> ATGTACTCAGGCTCTCTGCTAATCCGACAGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> ATGTACTCAGGCTCTCTGCTAATCCGACTGCTGTTTCTTCCGTTGATGAT  Raphanus raphanistrum subsp. maritimus

               851    -    901
UN17487        --> CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCCCAAAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus sativus var. oleiformis
FD544913       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTGCCCCAAAGAAA  Raphanus sativus var. oleiformis
EX766880       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTTTTACCCCAAAGAAA  Raphanus raphanistrum subsp. maritimus
EV542248       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus sativus var. oleiformis
FD935283       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTGCCCCAAAGAAA  Raphanus sativus var. oleiformis
FD943611       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTGCCCCAAAGAAA  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTTTTACCCCAAAGAAA  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900067       --> CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAG.................  Raphanus raphanistrum subsp. maritimus
EV538175       --> CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTATTACCC-AAAGAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> CAGTTTGCTCCCTCCTCAACGGAGTGAAATGAGTTTTTACCCCAAAGAAA  Raphanus raphanistrum subsp. maritimus

               901    -    951
UN17487        --> AAGACAATGTTTCTTCTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- AAGACAATGTTTCTTCTCGATTTTATTAGACTATGCGCTTTGAAATTTT-  Raphanus sativus var. oleiformis
FD544913       <-- AAGACAATGTTTCTTTTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- AAGACAATGTTTCTTCTGGCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus sativus var. oleiformis
EX766880       <-- AAGACAATGTTTCTTTTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- AAGACAATGTATCTTCTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. maritimus
EV542248       <-- AAGACAATGTTTCTTTTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- AAGACAATGTTTCTTCTCGATTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus sativus var. oleiformis
FD935283       <-- AAGACAATGTTTCTTCTGGCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus sativus var. oleiformis
FD943611       <-- AAGACAATGTTTCTTCTGGCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- AAGACAATGTATTTTTTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900067       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV538175       --> AAGACAATGTTTCTTTTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> AAGACAATGTATCTTCTGCCTTTTATTAGACTATGCGCTTTGAAATTTTT  Raphanus raphanistrum subsp. maritimus

               951    -   1001
UN17487        --> AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTTAGTTT-C
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTTAGTTG-C  Raphanus sativus var. oleiformis
FD544913       <-- AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTTAGTTG-C  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- AGGACCTATTTAACCAGTTTTTCTTCTCG-TTTTGCAACTTTTAGTTTTC  Raphanus sativus var. oleiformis
EX766880       <-- AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTTAGTTG-C  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- AGGACCTATTTAACCAGTTTTTCTTCTCG-TTT-GCTACTTTTAGTTT-C  Raphanus raphanistrum subsp. maritimus
EV542248       <-- AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTGAGTTG-C  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTTAGTTG-C  Raphanus sativus var. oleiformis
FD935283       <-- AGGACCTATTTAACTAGTTTTTCTTCTCG-TTTTGCAACTTTTAGTTTTC  Raphanus sativus var. oleiformis
FD943611       <-- AGGACCTATTTAACCAGTTTTTCTTCTCGCTTT-GCAACTTTTAGTTTTC  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- AGGACCTATTTAACCAGTTTTTCTTCTCG-TTT-GCTACTTTTAGTTT-C  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900067       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV538175       --> AGGACTTATTTAACCAGTTTTTCTTCTCG-TTT-GCAACTTTGAGTTG-C  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> AGGACCTATTTAACCAGTTTTTCTTCTCG-TTT-GCTACTTTTAGTTT-C  Raphanus raphanistrum subsp. maritimus

               1001   -   1051
UN17487        --> ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTT-CTTTCTTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- ATTGGATTTT-CTTTTCTTTTAAGACTTGTAGTTCTTTTT-TTTTCTTGA  Raphanus sativus var. oleiformis
FD544913       <-- ATTGGAT-GTTCTTTTCT--TAAGACTTGTAGTT-TCTTT-TTTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX893996       <-- ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTT...........  Raphanus sativus var. oleiformis
EX766880       <-- ATTGGAT-GTTCTTTTCT--TAAGACTTGTAGTT-TCTTT-TTTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY895708       <-- ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTT-CTTTCTTGA  Raphanus raphanistrum subsp. maritimus
EV542248       <-- ATTGGATTTT-CTTTTCTTTTAAGACTTGTAGTTCTTTTT-TTTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW721142       <-- ATTGGATTTT-CTTTTCTTTTAAGACTTGTAGTTCTTTTT-TTTTCTTGA  Raphanus sativus var. oleiformis
FD935283       <-- ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTC-CTTTCTTGA  Raphanus sativus var. oleiformis
FD943611       <-- ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTC-CTTTCTTGA  Raphanus sativus cv Early Scarlet Globe
FD958872       <-- ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTTTCTTTCTTGA  Raphanus raphanistrum subsp. maritimus
EX890490       --> ..................................................  Raphanus sativus var. oleiformis
FD939075       --> ..................................................  Raphanus sativus var. oleiformis
FD532840       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY900067       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV538175       --> ATTGGATTTT-CTTTTCTTTTAAGACTTGTAGTTCTTTTT-TTTTCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD962292       --> ATTGGATTTTTCTTTTCTTTTAAGACTTGTAGTT-TTTTTTCTTTCTTGA  Raphanus raphanistrum subsp. maritimus

               1051   -   1101
UN17487        --> GTCTATCTAATGATTCAACTCTTTTGGACCATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW718964       <-- GTCTATCTAATGATTCAACTCc...........
FD544913       <-- GTCTATCTAATGATTCAACTC............
EX893996       <-- .................................
EX766880       <-- GTCTATCTAATGATTCAACTCTTTTGGAC....
EY895708       <-- GTCTATCTAATGATTGAACTCTTTTGAACC...
EV542248       <-- GTCTATCTAATGATTCAACTCTTTTGGACC...
EW721142       <-- GTCTATCTAATGATTCAACTCTTTTGGACCATC
FD935283       <-- GTCTATCTAATGATTCAACTCTTTTGAACC...
FD943611       <-- GTCTATCTAATGATTCAAC..............
FD958872       <-- GTCTATCTAATGATTGAACTCTTTTGaacg...
EX890490       --> .................................
FD939075       --> .................................
FD532840       --> .................................
EY900067       --> .................................
EV538175       --> GTCTATCTAATGATTCAACTCTTTTGGACC...
FD962292       --> GTCTATCTAATGATTGAACTCTTTTGaacg...