Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17505

               1      -     51
UN17505        --> AGGGGATTCTCCTTTGGCCTATTCAAATCAAATTAAGAATCTCTTCTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ..................................................
EY935154       <-- ..................................................
EW719936       <-- ..................................................
FD559849       --> AGGGGATTCTCCTTTGGCCTATTCAAATCAAATTAAGAATCTCTTCTTCC
EX890284       --> ..................................................
FD949484       --> ..................................................
EW716084       --> ..................................................
EY939168       --> ..................................................

               51     -    101
UN17505        --> CCAAAAATTTTAATTTCCCTTTTCTTGTTGTTCGTTTCACAAAAGAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ........................ggGTTGTGCGTTTCACAAAAGAGGAC
EY935154       <-- ..................................................
EW719936       <-- ..................................................
FD559849       --> CCAAAAATTTTAATTTCCCTTTTCTTGTTGTTCGTTTCACAAAAGAGGAC
EX890284       --> ........................ggGTTGTGCGTTTCACAAAAGAGGAC
FD949484       --> .........................gGTTGTTCGTTTCACAAAAGAGGAC
EW716084       --> ....................................ggACAAAAGAGGAC
EY939168       --> ..................................................

               101    -    151
UN17505        --> AAAAACAAAACAAAACAA--GAAGAAGTCACATCTCTCTAATCTATTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- AAAAACAAAACAAAACAA--GAAGAAGTCACATCTCTCTAATCTATTTGC
EY935154       <-- ........................gggcCACATCTCTCTAATCTATTTGC
EW719936       <-- ...........................................tcTTTGT
FD559849       --> AAAAACAAAACAAAACAA--GAAG---TCACATCTCTCTAATCTATTTGC
EX890284       --> AAAAACAAAACAAAACAA--GAAGAAGTCACATCTCTCTAATCTATTTGC
FD949484       --> AAAAACAAAACAAAACAA--GAAG---TCACATCTCTCTAATCTATTTGC
EW716084       --> AAAAACAAAACAAAACAAAACAAGAAGTCCCATCTCCCTAACCTCTTTGT
EY939168       --> ........................gggcCACATCTCTCTAATCTATTTGC

               151    -    201
UN17505        --> TGTCTTAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TGTCTTAGGTTTACCTCCATCAACCAAACACAATGGCGAACGCAGCGTCA
EY935154       <-- TGTCTTAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCA
EW719936       <-- TGTCTAAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCG
FD559849       --> TGTCTTAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCA
EX890284       --> TGTCTTAGGTTTACCTCCATCAACCAAACACAATGGCGAACGCAGCGTCA
FD949484       --> TGTCTTAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCA
EW716084       --> TGTCTAAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCG
EY939168       --> TGTCTTAGGTTTACCTCCATCAACCAAACGCAATGGCGAACGCAGCGTCA

               201    -    251
UN17505        --> GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- GGAATGGCGGTGGTAGACGAA--TAAGCTCAAGTTTTTGGAGCTAAAAGC
EY935154       <-- GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC
EW719936       <-- GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC
FD559849       --> GGAATGGCGGTGGTAGACGAATGTAAACTCAAGTTTTTGGAGCTAAAAGC
EX890284       --> GGAATGGCGGTGGTAGACGAAT--AAGCTCAAGTTTTTGGAGCTAAAAGC
FD949484       --> GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC
EW716084       --> GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC
EY939168       --> GGAATGGCGGTGGTAGACGAATGTAAGCTCAAGTTTTTGGAGCTAAAAGC

               251    -    301
UN17505        --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
EY935154       <-- GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
EW719936       <-- GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
FD559849       --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
EX890284       --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
FD949484       --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
EW716084       --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG
EY939168       --> GAAAAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGG

               301    -    351
UN17505        --> TGGTCGAAAAACTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TGGTCGAAAAGCTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT  Raphanus sativus var. oleiformis
EY935154       <-- TGGTCGAAAAACTTGGAAGTCCCGAGGAAAACTACGACGATTTCTCCAAT  Raphanus sativus cv Early Scarlet Globe
EW719936       <-- TGGTCGAAAAACTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT  Raphanus sativus var. oleiformis
FD559849       --> TGGTCGAAAAGCTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT  Raphanus raphanistrum subsp. landra
EX890284       --> TGGTCGAAAAGCTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT  Raphanus sativus var. oleiformis
FD949484       --> TGGTCGAAAAACTTGGAAGTCCCGAGGAAAACTACGACGATTTCTCCAAT  Raphanus sativus cv Early Scarlet Globe
EW716084       --> TGGTCGAAAAACTTGGAAGTCCCGAGGAGAACTACGACGATTTCTCCAAT  Raphanus sativus var. oleiformis
EY939168       --> TGGTCGAAAAACTTGGAAGTCCCGAGGAAAACTACGACGATTTCTCCAAT  Raphanus sativus cv Early Scarlet Globe

               351    -    401
UN17505        --> TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
EY935154       <-- TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
EW719936       <-- TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
FD559849       --> TCTCTTCCGGCCAATGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
EX890284       --> TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
FD949484       --> TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
EW716084       --> TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC
EY939168       --> TCTCTTCCGGCCAACGAGTGCCGCTATGCCGTCTATGACTTCGACTTCAC

               401    -    451
UN17505        --> CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
EY935154       <-- CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
EW719936       <-- CACTGTTGAGAATTGCCAGAAGAGCAAAATTTTTTTCATAGCATGGTCAC
FD559849       --> CACTGTTGAGCATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
EX890284       --> CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
FD949484       --> CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
EW716084       --> CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC
EY939168       --> CACTGTTGAGAATTGCCAGAAGAGCAAAATCTTCTTCATAGCATGGTCAC

               451    -    501
UN17505        --> CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
EY935154       <-- CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
EW719936       <-- CGGATTTTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
FD559849       --> CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGG--
EX890284       --> CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
FD949484       --> CGGATTCTTCGAGTGTGAGGATGAATATGGTGTATGCCAGCTCAAAGGAC
EW716084       --> CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC
EY939168       --> CGGATTCTTCGAGTGTGAGGATGAAGATGGTGTATGCCAGCTCAAAGGAC

               501    -    551
UN17505        --> AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus var. oleiformis
EY935154       <-- AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus cv Early Scarlet Globe
EW719936       <-- AGGTTCAAGAGAGAATTAGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus var. oleiformis
FD559849       --> --GTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus raphanistrum subsp. landra
EX890284       --> AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus var. oleiformis
FD949484       --> AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus cv Early Scarlet Globe
EW716084       --> AGGTTCAAGAGAGAATTAGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus var. oleiformis
EY939168       --> AGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAATTACAAGCCACGGA  Raphanus sativus cv Early Scarlet Globe

               551    -    601
UN17505        --> TCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus var. oleiformis
EY935154       <-- CCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus cv Early Scarlet Globe
EW719936       <-- TCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus var. oleiformis
FD559849       --> CCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus raphanistrum subsp. landra
EX890284       --> TCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus var. oleiformis
FD949484       --> CCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus cv Early Scarlet Globe
EW716084       --> TCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus var. oleiformis
EY939168       --> CCCGAGTGAGATGAGTTTTGACATCATCAAAAGTCGTGCTCTCTAGATTC  Raphanus sativus cv Early Scarlet Globe

               601    -    651
UN17505        --> ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
EY935154       <-- ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
EW719936       <-- ATATGTGCCTGATTTCTTATCATATATCCATAAGTGCTCCATCATCATTA
FD559849       --> ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
EX890284       --> ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
FD949484       --> ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA
EW716084       --> ATATGTGCCTGATTTCTTATCATATATCCATAAGTGCTCCATCATCATTA
EY939168       --> ATATGTGCCTGATTCCTTATCATATATCCATAAGTGCTCCATCATCATTA

               651    -    701
UN17505        --> TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
EY935154       <-- TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
EW719936       <-- TT-CAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTT
FD559849       --> TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
EX890284       --> TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
FD949484       --> TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCACTCTTTC
EW716084       --> TT-CAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC
EY939168       --> TTTCAAAGAACTTCTCCATGTTGTGTAACTTTTGTTGGTTTCATTCTTTC

               701    -    751
UN17505        --> TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTT-ATTTGTATTTAAACTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTT-ATTTGTATTTAAACTTG
EY935154       <-- TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTTTATTTGTATTTAAACTTG
EW719936       <-- TTTTTCCTCTTGGCTCTTTTTAATCTTTTTTT-ATTTGCATTTA---AAG
FD559849       --> ..................................................
EX890284       --> TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTT-ATTTGTATTTAAACTTG
FD949484       --> TTCTTCCTCTTGGCTCTTTTTAATCT........................
EW716084       --> TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTT-ATTTGCATTTAAA---G
EY939168       --> TTCTTCCTCTTGGCTCTTTTTAATCTTTTTTTTATTTGTATTTAAACTTG

               751    -    801
UN17505        --> ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCATGTAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCATGTAGTTT
EY935154       <-- ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCATGTAGTTT
EW719936       <-- ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCGTGTAGTTT
FD559849       --> ..................................................
EX890284       --> ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCATGTAGTTT
FD949484       --> ..................................................
EW716084       --> ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCGTGTAGTTT
EY939168       --> ACGTGGGTTTTATACTCTGGCTTGGGATAAGCTGTAAAACCATGTAGTTT

               801    -    851
UN17505        --> ATCGTGTAATTGCTGGCATAAAAAAATAAAACGTATTACTTTTCCAATGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ATCGTATAATTGCTGGCATAAAAAAATAAAACGTATTACTTTTCC.....
EY935154       <-- ATCGTGTAATTGCTGGCATAAAAAAATAAAACGTATTACTTTTCC.....
EW719936       <-- ATCGTGTAATTGCTGGCATAAAAAAATAAAACATATTACTTTTCCAATGC
FD559849       --> ..................................................
EX890284       --> ATCGTATAATTGCTGGCATAAAAAAATAAAACGTATTACTTTTCC.....
FD949484       --> ..................................................
EW716084       --> ATCGTGTAATTGC.....................................
EY939168       --> ATCGTGTAATTGCTGGCATAAAAAA-TAAAACGTATTACTTTTCC.....

               851    -    901
UN17505        --> AGCAATATGTAAGCTCACTTAGAACATAATTATAACCATCACGATTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EX893834       <-- ..................................................
EY935154       <-- ..................................................
EW719936       <-- AGCAATATGTAAGCTCACTTAGAACATAATTATAACCATCACGATTTTTC
FD559849       --> ..................................................
EX890284       --> ..................................................
FD949484       --> ..................................................
EW716084       --> ..................................................
EY939168       --> ..................................................

               901    -    951
UN17505        --> TCGTTTG
                   ~~~~~~~
EX893834       <-- .......
EY935154       <-- .......
EW719936       <-- TCGTTTG
FD559849       --> .......
EX890284       --> .......
FD949484       --> .......
EW716084       --> .......
EY939168       --> .......