RadishBase

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Alignment for radish unigene UN17513

               1      -     51
UN17513        --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
EX757746       --> GGAAGATCGTAACGACTAAAAAAAAAAAGAAAAACTCAAGAGACGAGAAA
EY907219       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD542746       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD543709       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD569011       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD571024       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD940812       --> GGAAGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD973152       --> ..ggGATCGTAACGACTAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
EV539198       --> ......ggGTAACGACTAAACGAAGAA-GAAAAACTCAAGAGACGAGAAA
EX890501       --> ......ggGTAACGAATAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
FD533791       --> ........ggAACGAATAAACGAAAAA-GAAAAACTCAAGAGACGAGAAA
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               51     -    101
UN17513        --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
EX757746       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
EY907219       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD542746       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD543709       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD569011       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD571024       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD940812       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD973152       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
EV539198       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
EX890501       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
FD533791       --> GAGAGAGTGATGGAGAGGATTGTCGAGGTAGCGTATGGAGCATCCGTGAA
EW722227       --> .........................................gTCCGTGAA
EW724232       --> .........................................gTCCGTGAA
FD980003       --> ..................................................

               101    -    151
UN17513        --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
EX757746       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
EY907219       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD542746       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD543709       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD569011       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD571024       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD940812       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD973152       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCGTAA
EV539198       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
EX890501       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCGGATGTTGTCATAA
FD533791       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCGGATGTTGTCATAA
EW722227       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
EW724232       --> AGCAGTTTTAACGTTGTTGGAGAAGAATCTGTTGCCAGATGTTGTCATAA
FD980003       --> .......................................TGTTGTCATAA

               151    -    201
UN17513        --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EX757746       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EY907219       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD542746       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD543709       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD569011       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD571024       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD940812       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD973152       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EV539198       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EX890501       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD533791       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EW722227       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
EW724232       --> GGCTACTAACGAGGCTACTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA
FD980003       --> GGCTACTAACGAGGCTGCTTCTCGCCGGTCGACTCCGTTCCGGTTACAAA

               201    -    251
UN17513        --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAATTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCATCAACTCTAT  Raphanus sativus cv Early Scarlet Globe
FD571024       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCATCAACTCTAT  Raphanus sativus cv Early Scarlet Globe
FD940812       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus sativus var. oleiformis
FD973152       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus sativus var. oleiformis
FD533791       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. maritimus
EW722227       --> CCCACGGCGGAACTGCAACTTTCTGATCTACTCCGTTTCATCAACTCTAT  Raphanus sativus cv Early Scarlet Globe
EW724232       --> CCCACGGCGGAACTGCAACTTTCTGATCTACTCCGTTTCATCAACTCTAT  Raphanus sativus cv Early Scarlet Globe
FD980003       --> CCCACGGCGGAGCTGCAACTTTCTGATCTACTCCGTTTCGTCAACTCTAT  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN17513        --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EX757746       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EY907219       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD542746       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD543709       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD569011       --> AAAAGA--TGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD571024       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD940812       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD973152       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EV539198       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EX890501       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD533791       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EW722227       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
EW724232       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT
FD980003       --> AAAAGAGATGCCTATAGCGATCAATACCGAGAAGCCGAAGACGCAACACT

               301    -    351
UN17513        --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................
EY903217       <-- ..................................................
FD968896       <-- ..................................................
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EX757746       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EY907219       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD542746       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD543709       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD569011       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD571024       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD940812       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD973152       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EV539198       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EX890501       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD533791       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EW722227       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
EW724232       --> ATGAACTACCAACGGCTTTCTTCGAACTTGTTCTTGGAAGAAACATGAAA
FD980003       --> ..................................................

               351    -    401
UN17513        --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> TACAGCTCATGTTATTCCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> TACAGCTCATGTTACTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus cv Early Scarlet Globe
FD571024       --> TACAGCTCATGTTACTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus cv Early Scarlet Globe
FD940812       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus var. oleiformis
FD973152       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> TACAGCTCATGCTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus var. oleiformis
FD533791       --> TACAGCTCATGTTATTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus raphanistrum subsp. maritimus
EW722227       --> TACAGCTCATGTTACTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus cv Early Scarlet Globe
EW724232       --> TACAGCTCATGTTACTTCCCAAAGGATTCAAGTAGCTTAGAAGAAGCAGA  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               401    -    451
UN17513        --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- .................TATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- ................................................AC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> GGAAGCACTATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus sativus cv Early Scarlet Globe
FD571024       --> GGAAGCACTATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus sativus cv Early Scarlet Globe
FD940812       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus sativus var. oleiformis
FD973152       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> GGAAGCAATATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> GGAAGCAATATTGGCCCTATATTGCGAAAGAGCTAAAGTGGAAGATGGAC  Raphanus sativus var. oleiformis
FD533791       --> GGAAGCAATATTGGCCCTATATTGCGAAAGAACTAAAGTGGAAGATGGAC  Raphanus raphanistrum subsp. maritimus
EW722227       --> GGAAGCACTATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus sativus cv Early Scarlet Globe
EW724232       --> GGAAGCACTATTGGCTCTATATTGCGAAAGAGCCAAAGTGGAAGATGGAC  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               451    -    501
UN17513        --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- .............TGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> AAAGTGTTCTCGATGTCGGATGCGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus cv Early Scarlet Globe
FD571024       --> AAAGTGTTCTCGATGTCGGATGCGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus cv Early Scarlet Globe
FD940812       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus var. oleiformis
FD973152       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus var. oleiformis
FD533791       --> AAAGTGTTCTCGATGTCGGATGTGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus raphanistrum subsp. maritimus
EW722227       --> AAAGTGTTCTCGATGTCGGATGCGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus cv Early Scarlet Globe
EW724232       --> AAAGTGTTCTCGATGTCGGATGCGGCTGGGGATCTTTGTCTTTGTACATT  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17513        --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EY903217       <-- GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD968896       <-- GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD538736       <-- ..................................................
FD539487       <-- ..................................................
EX755532       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EX757746       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EY907219       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD542746       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD543709       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCG-TCTTTGTAACTCAAAGAC
FD569011       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD571024       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD940812       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD973152       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EV539198       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EX890501       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGCAACTCAAAGAC
FD533791       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTTTTTGCAACTCAAAGAC
EW722227       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
EW724232       --> GCCCGCAAGTATAGCAATTGCAAGTTAACCGGTCTTTGTAACTCAAAGAC
FD980003       --> ..................................................

               551    -    601
UN17513        --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ACAGAGAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- ................GACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> ACAGAAAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> ACAGAAAGCATTTATTGATGACCAATGCAGGAAACTCAGCATTAAAAATG  Raphanus sativus cv Early Scarlet Globe
FD571024       --> ACAGAAAGCATTTATTGATGACCAATGCAGGAAACTCAGCATTAAAAATG  Raphanus sativus cv Early Scarlet Globe
FD940812       --> ACAGAAAGCATTTATTGATGGCCAATG.......................  Raphanus sativus var. oleiformis
FD973152       --> ACAGAAAGCATTTATTGACGACCAAT........................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> ACAGAGAGCATTTATTGACGACCAATGCAGGAAACTCAGCATTAAAAATA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> GCAGAAAGCATTTATTGATGACCAATGCAGGAAACTCGGCATTAAAAATG  Raphanus sativus var. oleiformis
FD533791       --> GCAGAAAGCATTTATTGATGACCAATGCAGGAAACTCGGCATTAAAAATG  Raphanus raphanistrum subsp. maritimus
EW722227       --> ACAGAAAGCATTTATTGATGACCAATGCAGGAAACTCAGCATTAAAAATG  Raphanus sativus cv Early Scarlet Globe
EW724232       --> ACAGAAAGCATTTATTGATGACCAATGCAGGAAACTCAGCATTAAAAATG  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17513        --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
EY903217       <-- TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD968896       <-- TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD538736       <-- TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD539487       <-- ..................................................
EX755532       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
EX757746       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGG-ACCTAC
EY907219       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD542746       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD543709       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD569011       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGTATGAAGGGACCTAC
FD571024       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
EX890501       --> TTGAAATCATTGTTGGGGATATTAGCACTTTTGAGCATGAAGGAATCTAT
FD533791       --> TTGAAATCATTGTTGGGGATATTAGCACTTTTGAGCATGAAGGAATCTAT
EW722227       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
EW724232       --> TTGAAATCATTGTTGGCGATATTAGCACTTTTGAGCATGAAGGGACCTAC
FD980003       --> ..................................................

               651    -    701
UN17513        --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
EY903217       <-- GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
FD968896       <-- GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
FD538736       <-- GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
FD539487       <-- ..................................................
EX755532       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCAT--G-AAAACTATGGAGA
EX757746       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAA-CTATGGAGA
EY907219       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAA-CTATGGAGA
FD542746       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAA-CTATGGAGA
FD543709       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAA-CTATGGAGA
FD569011       --> GATCGAGTATTCTCCATCGAAATGTTT.......................
FD571024       --> GATCGAGTAT-CTCCATCGAAATGTTTGAGTATATGAAAA-CTATGGAGA
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATG..............
EX890501       --> GATCGAGTATTCTCCATCGAAATGTTT.......................
FD533791       --> GATCGAGTATTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
EW722227       --> GATCGAGTACTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
EW724232       --> GATCGAGTACTCTCCATCGAAATGTTTGAGCATATGAAAAACTATGGAGA
FD980003       --> ..................................................

               701    -    751
UN17513        --> GCTTCTGAAGAAAATTGGAAGGTGGATGAAGGAAGATAGTCTTCTGTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- GCTTCTGAAGAAAATTGGAAGGTGGATGAAGGAAGATAGTCTTCTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- GCTTCTGAAGAAAATTGGAAGGTGGATGAAGGAAGATAGTCTTCTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- GCTTCTGAAGAAAATTGGAAGGTGGATGAAGGAAGATAGTCTTCTGTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- GCTTCTGAAGAAAATTGGAAGGTGGATGAAGGAAGATAGTCTTCTGGTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> GCTTCTGA-GAAAATTGGAAG-TGGATGA.....................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> GCTctgagaaattg....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> GCTTCTGA-GAAAATTGGAAG-TGGATGAAGGA-GATAGTCTTCTGTT-G  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> GCTTCTGA-G-AAATTGGAAG-TGGAT.......................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> GCTTCTGAAGAAAATTGGAAGtgga.........................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571024       --> GCTTCTGA-G-AAATTGGGAGCTGGATGAAG--AGATAGTCTTCTGTTTG  Raphanus sativus cv Early Scarlet Globe
FD940812       --> ..................................................  Raphanus sativus var. oleiformis
FD973152       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> ..................................................  Raphanus sativus var. oleiformis
FD533791       --> GCTTCTAAAGAAA-TTGGGAGCTGGATGAAGGA-GATAGTCTTCTGTTTG  Raphanus raphanistrum subsp. maritimus
EW722227       --> GCTTCTGAAGAAAATTGGGAGCTGGATGAAGGAAGATAGTCTTCTGTTTG  Raphanus sativus cv Early Scarlet Globe
EW724232       --> GCTTCTGAAGAAAATTGGGAGCTGGATGAAGGAAGATAGTCTTCTGTTTG  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN17513        --> TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGATCTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGATCTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY903217       <-- TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGATCTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD968896       <-- TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGATTTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538736       <-- TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGATCTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD539487       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX755532       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757746       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY907219       --> -TCATTATTTCTGC-AT-AGACATT-GC-TA-CACTTT-GAG-ATCTGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542746       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD543709       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD569011       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD571024       --> TTCATTATTTCTGC-ATAAGACATTTGCT-ACAACTTT-GAGGA-GTGCA  Raphanus sativus cv Early Scarlet Globe
FD940812       --> ..................................................  Raphanus sativus var. oleiformis
FD973152       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539198       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX890501       --> ..................................................  Raphanus sativus var. oleiformis
FD533791       --> TTCACTATTTCTGC-ATAAGACATTTGCTTATCACTTT-GAGG.......  Raphanus raphanistrum subsp. maritimus
EW722227       --> TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTT-GAGGAAGTGCA  Raphanus sativus cv Early Scarlet Globe
EW724232       --> TTCATTATTTCTGCCATAAGACATTTGCTTACCACTTTTGAGGAAGTGCA  Raphanus sativus cv Early Scarlet Globe
FD980003       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN17513        --> TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
EY903217       <-- TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
FD968896       <-- TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
FD538736       <-- TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
FD539487       <-- .............ATCACAAGATATTTCTTTAGCGGAGGAACAATGCCAT
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> TGACGATGACTGGA....................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> TGACGATGACTGGATCACA...............................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGAACAATGCCAT
EW724232       --> TGACGATGACTGGATCACAAGATATTTCTTTAGTGGAGGA-CAATGCCAT
FD980003       --> ..................................................

               851    -    901
UN17513        --> CGGCGAATCTTCTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- CGGCGAATCTTCTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
EY903217       <-- CGGCGAATCTTCTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
FD968896       <-- CGGCGAATTTTTTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
FD538736       <-- CGGCGAATCTTTTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
FD539487       <-- CGGGGAATTTTTTCCTCTATTTCCAAGACAATGTTTCGATTGTGGATCAT
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> CGGCGAATCTTCTCCTCTATTTCCAAGACGATGTTTCGATTGTGGATCAC
EW724232       --> CGGCGAATCTTCTCCTCTATTTCCA-GACGATGTTTCGATTGTGGATCAC
FD980003       --> ..................................................

               901    -    951
UN17513        --> TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCTCAA
EY903217       <-- TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCCCAA
FD968896       <-- TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCTCAA
FD538736       <-- TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCTCAA
FD539487       <-- TGGCTCCTAAACGGAAAGCATTATGCAAGAACCAGTGAAGAGTGGCTCAA
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> TGGCTCCTAAATGGGAAGCATTAcg.........................
EW724232       --> TGGCTCtaaatgggagc.................................
FD980003       --> ..................................................

               951    -   1001
UN17513        --> AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
EY903217       <-- AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
FD968896       <-- AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
FD538736       <-- AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
FD539487       <-- AAGAATGGACAAGGAGATAGTTGCAATAAGGGAGATAATGGAAATGACTT
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1001   -   1051
UN17513        --> ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGGAGGACCTTCTTC
EY903217       <-- ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTC
FD968896       <-- ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTC
FD538736       <-- ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGGAGAACCTTCTTC
FD539487       <-- ATGGGAAAGAGGAGGCAGTGAAGTGGATGGTTTACTGTAGAACCTTTTTC
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1051   -   1101
UN17513        --> ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTGGATGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTGGATGAT
EY903217       <-- ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTGGATGAT
FD968896       <-- ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTAGATGAT
FD538736       <-- ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTGGATGAT
FD539487       <-- ATGGCAGTTGCTGAGCTTTTTGGATACAACAATGGAGAAGAGTGGATGAT
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1101   -   1151
UN17513        --> TTCACACTTCCTATTCAAGAAGAAATGATTATATCTATCTTCTGCTAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- TTCACACTTCCTATTCAAGAAGAAATGATTATATCTATCTTCTGCTAGTA
EY903217       <-- TTCACACTTCCTATTCAAGAAGAAATGATTATATCTATCTTCTGCTAGTA
FD968896       <-- TTCACACTTCCTATTCAAGAAGAAATGATTATATCTATCTTCTGCTAGTA
FD538736       <-- TTCACACTTCCTATTCAAGAAGAAATGATTATATCTATCTTCTGCTAGTA
FD539487       <-- TTCACACTTCCTATTCAAGAAGAAATGATTATATTTATTTTTTGCTAGTA
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1151   -   1201
UN17513        --> ATCAGTTTATGTTTTATCTTTGAAGTTCTGTGAGCCAAATAAAGTATAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ATCAGTTTATGTTTTATCTTTGAAGTTCTGTGAGCCAAATAAAGTATAAA
EY903217       <-- ATCAGTTTATGTTTTATCTTTGAAGTTCTGTGAGCCAAATAAAGTATAAA
FD968896       <-- ATCAGTTTATGTTTTATCTTTGAAGTTCTGTGAGCTAAATAAAGTATAAA
FD538736       <-- ATCAGTTTATGTTTTATCTTTGAAGTTCTGTGAGCCAAATAAAGTATAAA
FD539487       <-- ATCAGTTTATGTTTTATCTTTGAAGTTTTGTGAGCCAAATAAAGTATAAA
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1201   -   1251
UN17513        --> ACATTATCCTCCTACTTTAATTGATTGTCTTCCTAGGTAATCAATCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- ACATTATCCTCCTACTTTAATTGATTGTCTTCCTAGGT............
EY903217       <-- ACATTATCCTCCTACTTT................................
FD968896       <-- ACATTATCCTCCTACTTTAATTGATTGTCTTCCTAGGTAATCAATCGTAT
FD538736       <-- ACATTATCCTCCc.....................................
FD539487       <-- ACATTATCCTCCTACTTTAATTGATTGTTTTCCTAGGTAATCAATCGTAT
EX755532       --> ..................................................
EX757746       --> ..................................................
EY907219       --> ..................................................
FD542746       --> ..................................................
FD543709       --> ..................................................
FD569011       --> ..................................................
FD571024       --> ..................................................
FD940812       --> ..................................................
FD973152       --> ..................................................
EV539198       --> ..................................................
EX890501       --> ..................................................
FD533791       --> ..................................................
EW722227       --> ..................................................
EW724232       --> ..................................................
FD980003       --> ..................................................

               1251   -   1301
UN17513        --> GCTTTCCTATGAAAAAAAGAAGCTCAATGGATATTAATTTGTTTTCCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV543048       <-- .................................................
EY903217       <-- .................................................
FD968896       <-- GCTTTCCTATG......................................
FD538736       <-- .................................................
FD539487       <-- GCTTTCCTATGAAAAAAAGAAGCTCAATGGATATTAATTTGTTTTCCCC
EX755532       --> .................................................
EX757746       --> .................................................
EY907219       --> .................................................
FD542746       --> .................................................
FD543709       --> .................................................
FD569011       --> .................................................
FD571024       --> .................................................
FD940812       --> .................................................
FD973152       --> .................................................
EV539198       --> .................................................
EX890501       --> .................................................
FD533791       --> .................................................
EW722227       --> .................................................
EW724232       --> .................................................
FD980003       --> .................................................