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Alignment for radish unigene UN17515

               1      -     51
UN17515        --> GTCAAGGTTTTTTTTTCTCTACCATTTCCTTTAAAATCATTATAGGAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> GTCAAGGTTTTTTTTTCTCTACCATTTCCTTTAAAATCATTATAGGAAAA
FD935650       --> ..........................................TAGGAAAA
EY911445       --> ............................................GGAAAA
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               51     -    101
UN17515        --> TTCGAAAAGCTTTTAGAAACAGAAAAGCCCACGTGGGGCTAGATTAAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> TTCGAAAAGCTTTTAGAAACAGAAAAGCCCACGTGGGGCTAGATTAAAGG
FD935650       --> TTCGAAAAGCTTTTAAAAACAAAAAAGCCCACGTGGGGCTAGATTAAAGG
EY911445       --> TTCGAAAAGCTATTAGAAACAGAAAAGCCCACGTGGGGCTAGATTAAAGG
EY896036       --> ................................GTGGGGCAAGATTAAAGG
EV531801       --> .................................TGGGGCAAGATTAAAGG
EY926175       --> ..................................................

               101    -    151
UN17515        --> AGATCTACAAATTGACGGCGTCAAGTCAACGTGCAACTAAAAGTACCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EY929844       <-- ..................................................  Raphanus sativus var. oleiformis
EY900509       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
FD981371       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915632       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908561       --> AGATCTACAAATTGACGGCGTCAAGTCAACGTGCAACTAAAAGTACCGTC  Raphanus sativus cv Rat-Tail Radish #3870
FD935650       --> AAATCTACAAATTGACGGCGTCAAGTCAACGTGCAACTAAAAGTACCGTC  Raphanus sativus var. oleiformis
EY911445       --> AGATCTACAAATTGACGGCGTCAAGTCAACGTGCAACTAAAAGCTCCGTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896036       --> AGATCTACAAATTGACGGCGTCAAGTCAAAGTGCAACTAAAAGCACCGTC  Raphanus raphanistrum subsp. maritimus
EV531801       --> AGATCTACAAATTGACGGCGTCAAGTCAAAGTGCAACTAAAAGCACCGTC  Raphanus raphanistrum subsp. maritimus
EY926175       --> ................................gtAACTAAAAGTACCGTC  Raphanus sativus var. oleiformis

               151    -    201
UN17515        --> AAAGGTTT-AAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> AAAGGTTT-AAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA
FD935650       --> AAAGGTTT-AAAAAGTTAACGGAAATAAATATTACACGATTAAGTAAAAA
EY911445       --> AAAGGTTTTAAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA
EY896036       --> AAAGGCTT-AAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA
EV531801       --> AAAGGCTT-AAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA
EY926175       --> AAAGGTTT-AAAAAGTTAACGGAGATAAATATTACACGATTAAGTAAAAA

               201    -    251
UN17515        --> A-CAAGCTTTATTAATCTAATAATAATCCGGGACTTCCCATCTTCTGCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> A-CAAGCTTTATTAATCTAATAATAATCCGGGACTTCCCATCTTCTGCCG
FD935650       --> A-CAAGCTTTATTAATCTAATAATAATCCGGGACTTCCCATCTTCTGCCG
EY911445       --> A-CAAGTTTTATTAATCTAATAACAATCCGGGACTTCCCATCTTCTGCCG
EY896036       --> AACAAGCTTTATTAATCTAACAAT---CCGGGACTTCCCATCTTCTGCCG
EV531801       --> AACAAGCTTTATTAATCTAACAAT---CCGGGACTTCCCATCTTCTGCCG
EY926175       --> A-CAAGCTTTATTAATCTAATAATAATCCGGGACTTCCCATCTTCTGCCG

               251    -    301
UN17515        --> TCGTACCGGCGATTCCTCCGGCGTCGGCGAAGACTCCGGCGACGATGGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> TCGTACCGGCGATTCCTCCGGCGTCGGCGAAGACTCCGGCGACGATGGCA
FD935650       --> TCGTACCGGCGATTCCTCCGGCGTCGGCaaa...................
EY911445       --> TCGCACCGGCGATTCCTCCGGCGTCGGCGAAGACTCCGGCGACGATGGCA
EY896036       --> TCGTACCGGCGATTCCTCCGGCGTCGGCGAAGACTCCGGCGACGATGGCA
EV531801       --> TCGTACCGGCGATTCCTCCGGCGTCGGCGAAGACTCCGGCGACGATGGCA
EY926175       --> TCGTACCGGCGATTCCTCCGGCGTCGGCGAAGAATCCGGCGACGATGGCA

               301    -    351
UN17515        --> ACACATCGTCATCTTCATCGTCTATTGGATATGAGAGTGGCGAGGAAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ................................................AT
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> GCACATCGTCATCTTCATCGTCTATTGGATATGAGAGTGGCGAGGAAAAT
FD935650       --> ..................................................
EY911445       --> ACACATCGTCATCTTCATCTTCTATTGGAGATGAGAGTGGCGAGGAAAAT
EY896036       --> ACACATCGTCATCTTCATCGTCTATTGGATATGAGAGTGGCGAGGAAAAT
EV531801       --> ACACATCGTCATCTTCATCGTCTATTGGATATGAGAGTGGCGAGGAAAAT
EY926175       --> GCACATCGTCATCTTCATCGTCTATTGGATATGAGAGTGGCGAGGAAAAT

               351    -    401
UN17515        --> ATCTCCACGGGAGATAACGGCGGAGAAGAGTCCGACGTTTCAGGCGAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ATCTCCACGGGAGATAACGGCGGAGAAGAGTCCGACGTT-CAGGCGAGAT
EY929844       <-- ....................................GTTTCAGGCGAGAT
EY900509       <-- ..................................................
FD981371       <-- ..................................................
EY915632       <-- ..................................................
EX908561       --> ATCTCCACGGGAGATAACGGCGGAAAAGAGTCCGACGTTTCAGGCGAGAT
FD935650       --> ..................................................
EY911445       --> ATCTCAACGGGAGATAACGGCGGAGAAGAGTCCGACGTT-CAGGCGAGAT
EY896036       --> ATCTCCACGGGAGATAACGGCGGAGAAGAGTCCGACGTTTCAGGCGAGAT
EV531801       --> ATCTCCACGGGAGATAACGGCGGAGAAGAGTCCGACGTTTCAGGCGAGAT
EY926175       --> ATCTCCACGGGAGATAACGGCGGAGAAGAGTCCGACGTTTCAGGCGAGAT

               401    -    451
UN17515        --> AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGTTAGTCGACGGCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGTTAGTCGACGGCG
EY929844       <-- AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGCTAGTCGACGGTG
EY900509       <-- .........................GATTCAGACGAGT-AGTCGACGGCG
FD981371       <-- .........................GATTCAGGCGAGT-AGTCAACGGCG
EY915632       <-- ..................................................
EX908561       --> AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGTTAGTCGACGGCG
FD935650       --> ..................................................
EY911445       --> AGTCACCGGCGGAGAAGAATCCGAAGATTCAGGCGAGTTAGTCAACGGCG
EY896036       --> AGTCACCGGCGGAGAAGACTCCGAAGATTCAGACGAGTTAGTCGACGGCG
EV531801       --> AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGTTAGTCGACGGCG
EY926175       --> AGTCACCGGCGGAGAAGACTCCGAAGATTCAGGCGAGCTAGTCGACGGTG

               451    -    501
UN17515        --> GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
EY929844       <-- GAGAAGAGTC-GACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGA
EY900509       <-- -AGAAGAGTC-GACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
FD981371       <-- -AGAAGAGTCCGACGA-TCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
EY915632       <-- ..................................................
EX908561       --> GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGA
FD935650       --> ..................................................
EY911445       --> GAGAAGAGTCCGATGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
EY896036       --> GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
EV531801       --> GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGC
EY926175       --> GAGAAGAGTCCGACGAATCAGGCGACGATGGAGGAGGAAGCGAGGTTTGA

               501    -    551
UN17515        --> ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTTGCGTTGGAAAGTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTAGCGTTGGAAAGTTT  Raphanus raphanistrum subsp. maritimus
EY929844       <-- ATGGGAACAGAATGTTCCGGAAGCTTCCGTTTGTTTGCGTTGGAAAGTTT  Raphanus sativus var. oleiformis
EY900509       <-- ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTAGCGTTGGAAAGTTT  Raphanus raphanistrum subsp. maritimus
FD981371       <-- ATGGGAACAGAATCT-CCGGAAGCTTCCGTTTGTT-GCGTTGGAAAGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915632       <-- .......................................TTGGAAAGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908561       --> ATGGGAACAGAATGTTCCGGAAGCTCCCGTTTGTTTGCGTTGGAAAGTTT  Raphanus sativus cv Rat-Tail Radish #3870
FD935650       --> ..................................................  Raphanus sativus var. oleiformis
EY911445       --> ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTTGCGTTGGAAAGTTT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896036       --> ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTAGCGTTGGAAAGTTT  Raphanus raphanistrum subsp. maritimus
EV531801       --> ATGGGAACAGAATCTTCCGGAAGCTTCCGTTTGTTAGCGTTGGAAAGTTT  Raphanus raphanistrum subsp. maritimus
EY926175       --> ATGGGAACAGAATGTTCCGGAAGCTTCCGTTTGTTTGCGTTGGAAAGTTT  Raphanus sativus var. oleiformis

               551    -    601
UN17515        --> AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- AACGTCTCTGGTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. maritimus
EY929844       <-- AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus sativus var. oleiformis
EY900509       <-- AACGTCTCTGGTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. maritimus
FD981371       <-- AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915632       <-- AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908561       --> AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus sativus cv Rat-Tail Radish #3870
FD935650       --> ..................................................  Raphanus sativus var. oleiformis
EY911445       --> AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896036       --> AACGTCTCTGGTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. maritimus
EV531801       --> AACGTCTCTGGTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus raphanistrum subsp. maritimus
EY926175       --> AACGTCTCTGTTTAAATAGCTTCTCAGGCGCTTCACGTCGGCGAGTTTCA  Raphanus sativus var. oleiformis

               601    -    651
UN17515        --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
EY929844       <-- CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
EY900509       <-- CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
FD981371       <-- CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCCGTCGATT
EY915632       <-- CCGGTTTTAATAAGAAGTCCTCCGCACCT-CCTCAAGACATCTGTCGATT
EX908561       --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
FD935650       --> ..................................................
EY911445       --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
EY896036       --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
EV531801       --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT
EY926175       --> CCGGTTTTAATAAGAAGTCCTCCGCACCTTCCTCAAGACATCTGTCGATT

               651    -    701
UN17515        --> CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EY929844       <-- CTGGTTAAGACATTCTCTGACGACATTATTACAACCGGAACTTGTCGGAA
EY900509       <-- CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
FD981371       <-- CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EY915632       <-- CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EX908561       --> CTGGTTAAGACATTCTCTGACGACATTATTACAACCGGAACTTGTCGGAA
FD935650       --> ..................................................
EY911445       --> CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EY896036       --> CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EV531801       --> CTGGTTAAGACATTCTCTGACGACATTATTACCACCGGAACTTGTCGGAA
EY926175       --> CTGGTTAAGACATTCTCTGACGACATTATTACAACCGGAACTTGTCGGAA

               701    -    751
UN17515        --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EY929844       <-- ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EY900509       <-- ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
FD981371       <-- ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EY915632       <-- ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EX908561       --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATT....
FD935650       --> ..................................................
EY911445       --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EY896036       --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EV531801       --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG
EY926175       --> ACTGGACGATTCCTTTATCTTTTTGAGGAGCTCGTAGCCAGTCATTCCAG

               751    -    801
UN17515        --> GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EY929844       <-- GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EY900509       <-- GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
FD981371       <-- GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EY915632       <-- GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EY896036       --> GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EV531801       --> GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT
EY926175       --> GCATACAGTAATCAGTGATGATCAAATCAACTTTCAATCTATCTAGTTCT

               801    -    851
UN17515        --> GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
EY929844       <-- GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
EY900509       <-- GCAGATGCTTTCTCGTTGTCTAGTCATAGAAACTCCAGAGCACGCCATCC
FD981371       <-- GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
EY915632       <-- GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> GCAGATGCTTTCTCGTTGTC..............................
EY896036       --> GCAGATGCTTTCTCGTTGTCTAGTCATAGAActc................
EV531801       --> GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC
EY926175       --> GCAGATGCTTTCTCGTTGTCTAGTCCTAGAAACTCCAGAGCACGCCATCC

               851    -    901
UN17515        --> GCTATCTACCGCCGTGACTTTGCAGGAAGTAATACGAAGCAATCTCTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- GCGGTCTACCGCCGTGACTTTGCAGGAAGTTATACGAAGCAATCTCTCGA  Raphanus raphanistrum subsp. maritimus
EY929844       <-- GCTATCTACCGCCGTGACTTTGCAGGAAGTAATACGAAGCGATCTCTCGA  Raphanus sativus var. oleiformis
EY900509       <-- GCGGTCTACCGCCGTGACTTTGCAGGAAGTTATACGAAGCAATCTCTCGA  Raphanus raphanistrum subsp. maritimus
FD981371       <-- GCTATCTACCGCCGTGACTTTGCAGGAAGTAATACGAAGCAATCTCTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY915632       <-- GCTATCTACCGCCGTGACTTTGCAGGAAGTAATACGAAGCAATCTCTCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX908561       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD935650       --> ..................................................  Raphanus sativus var. oleiformis
EY911445       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY896036       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV531801       --> GCGGTCTACCGCCGTGACTT..............................  Raphanus raphanistrum subsp. maritimus
EY926175       --> GCTATCTACCGCCGTGACTTT.............................  Raphanus sativus var. oleiformis

               901    -    951
UN17515        --> TGACAATCCGATCAACGAGGCTGTCATCAACGGCCAGGACATGAACTTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- TGACAATCCGATCAACGAGGCTGTCATCAACAGCCAGGACATGAACTTCA
EY929844       <-- TGACAATCCGATCAACGAGGCTGTCATCAACGGCCAGGACATGAACTTCA
EY900509       <-- TGACAATCCGATCAACGAGGCTGTCATCAACAGCCAGGACATGAACTTCA
FD981371       <-- TGACAATCCGATCAACGAGGCTGTCATCAACGGCCAGGACATGAACTTCA
EY915632       <-- TGACAATCCGATCAACGAGGCTGTCATCAACGGCCAGGACATGAACTTCA
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               951    -   1001
UN17515        --> TCTAACTCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- TCTAACTCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
EY929844       <-- TCTAACTCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
EY900509       <-- TCTAACTCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
FD981371       <-- TCTAACTCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
EY915632       <-- TCTAACCCCAACGGCGGAGATTCCATTTTTCCGATACCGACGCTCATCAT
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               1001   -   1051
UN17515        --> CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
EY929844       <-- CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
EY900509       <-- CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
FD981371       <-- CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
EY915632       <-- CTCTGAACTCCGTAGGCAAGAAACGCCACCGTCTCTGGCCATAGATGAGT
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               1051   -   1101
UN17515        --> TGCAGTACTAGTAACTGAGAGGACAAGAACAAAATAGCACAGAGAGAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- TGCAGTACTAGTAACTGAGAGGACAAGAACAAAATAGTACAGAGAGAGAG
EY929844       <-- AATAGTACTAGTAACTGAGAGGAGAAGATCAAAATAGCACAGAGAGAGAG
EY900509       <-- TGCAGTACTAGTAACTGAGAGGACAAGAACAAAATAGCACAGAGAGAGAG
FD981371       <-- TGCAGTACTAGTAACTGAGAGGACAAGAACAAAATAGCACAGAGAGAGAG
EY915632       <-- TGCAGTACTAGTAAATGAGAGGACAAGAACAAAATAGCACAGAGAGAGAG
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               1101   -   1151
UN17515        --> ------GAACAAGAGCTCTCACGCCTGGGTTTATTTTCTTCCTCTTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ------GAACAAGAGCTCTCACGCCTGGcc....................
EY929844       <-- AGAGAGGAACAAGAGCTCTCACGCCTcc......................
EY900509       <-- ------GAACAAGAGCTCTCACGCCTGGGTTTATTTTCc...........
FD981371       <-- ------GAACAAGAGCTCTCACGCCTGGGTTTATTTTCTTCCTCTTCTCC
EY915632       <-- ------GAACAAGAGCTCTCACGCCTGGGTTTATTTTCTTCCTCTTCTCC
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               1151   -   1201
UN17515        --> TCATCCAGACAGTTTTTATATTCCCAACTTTTTTTTCTCTCTCACTCTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV527598       <-- ..................................................
EY929844       <-- ..................................................
EY900509       <-- ..................................................
FD981371       <-- TCATCCAGACAGTTTTTATATTCCCAACTTTTTTTTCTCTCTCACTCTCC
EY915632       <-- TCATCCAGACAGTTTTTATATTCCCAACTTTTTTTTCTCTCTCACTCTCC
EX908561       --> ..................................................
FD935650       --> ..................................................
EY911445       --> ..................................................
EY896036       --> ..................................................
EV531801       --> ..................................................
EY926175       --> ..................................................

               1201   -   1251
UN17515        --> C
                   ~
EV527598       <-- .
EY929844       <-- .
EY900509       <-- .
FD981371       <-- C
EY915632       <-- t
EX908561       --> .
FD935650       --> .
EY911445       --> .
EY896036       --> .
EV531801       --> .
EY926175       --> .