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Alignment for radish unigene UN17558

               1      -     51
UN17558        --> GGAGGCACCAATCTTTCCCTATCTTCATCATCTTCTTCCATTTCACAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- ..................................................
EV532186       <-- ..................................................
EV571976       <-- ..................................................
FD942082       <-- ..................................................
EV544935       <-- ..................................................
EY902195       <-- ..................................................
EX898651       <-- ..................................................
EX893666       <-- ..................................................
FD530546       <-- ..................................................
FD552478       <-- ..................................................
FD983726       <-- ..................................................
FD977357       <-- ..................................................
EV572630       <-- ..................................................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> GGAGGCACCAATCTTTCCCTATCTTCATCATCTTCTTCCATTTCACAATT
EW723647       --> ...............................................ggg
EX894308       --> ..................................................
FD556123       --> ..................................................
EV549466       --> ..................................................
EY900592       --> ..................................................
EY932785       --> ..................................................
EV566959       --> ..................................................
EV567758       --> ..................................................
EX746401       --> ..................................................
FD534685       --> ..................................................
FD987736       --> ..................................................
EV527666       --> ..................................................
EW714601       --> ..................................................
FD981639       --> ..................................................
EX890074       --> ..................................................
EV525166       --> ..................................................
FD945864       --> ..................................................
FD981528       --> ..................................................

               51     -    101
UN17558        --> ACTTGAAGGAAGTGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- ...............................ggGTCTTTGATAGAGAGAA
EV532186       <-- .........................................TAGAGAGAA
EV571976       <-- ..................................................
FD942082       <-- ..................................................
EV544935       <-- ..................................................
EY902195       <-- ..................................................
EX898651       <-- ..................................................
EX893666       <-- ..................................................
FD530546       <-- ..................................................
FD552478       <-- ..................................................
FD983726       <-- ..................................................
FD977357       <-- ..................................................
EV572630       <-- ..................................................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> ACTTGAAGGAAGTGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
EW723647       --> ACTTGAAGGAAGTGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
EX894308       --> ..ggGAAGGAAGTGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
FD556123       --> ..ggGAAGGAAGTGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
EV549466       --> ...........ggGCGTGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
EY900592       --> ................gGAACCTAGTGGCAGACGTCTTTGATAGAGAGAA
EY932785       --> .........................gGGCAGACGTCTTTGATAGAGAGAA
EV566959       --> ...........................ggAGACGTCTTTGATAGAGAGAA
EV567758       --> ...........................ggAGACGTCTTTGATAGAGAGAA
EX746401       --> ...........................ggAGACGTCTTTGATAGAGAGAA
FD534685       --> ............................ggGACGTCTTTGATAGAGAGAA
FD987736       --> ............................ggGACGTCTTTGATAGAGAGAA
EV527666       --> ................................gGTCTTTGATAGAGAGAA
EW714601       --> ...............................ggGTCTTTGATAGAGAGAA
FD981639       --> ...............................ggGTCTTTGATAGAGAGAA
EX890074       --> ....................................TTTGATAGAGAGAA
EV525166       --> ......................................gGATAGAGAGAA
FD945864       --> ......................................gGATAGAGAGAA
FD981528       --> ..................................................

               101    -    151
UN17558        --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- CAAAAAAAAA--TATGGCTTCTTCTCCTT--TGTTCTACATTTTTCACTT
EV532186       <-- CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EV571976       <-- ...AAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD942082       <-- ..............................................ACTT
EV544935       <-- ..................................................
EY902195       <-- ..................................................
EX898651       <-- ..................................................
EX893666       <-- ..................................................
FD530546       <-- ..................................................
FD552478       <-- ..................................................
FD983726       <-- ..................................................
FD977357       <-- ..................................................
EV572630       <-- ..................................................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EW723647       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTCTCACTT
EX894308       --> CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD556123       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTTCTTGTTCTACATTTTTCACTT
EV549466       --> CAAAAAAAAAAATATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EY900592       --> CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EY932785       --> CAAAAAAAAAAATATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EV566959       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EV567758       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EX746401       --> CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD534685       --> CAAAAAAAAAAATATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD987736       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EV527666       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EW714601       --> CAAAAAAAAA--TATGGCTTCTTCTCCTT---GTTCTACATTTTTCACTT
FD981639       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EX890074       --> CAAAAAAAAA--TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
EV525166       --> CAAAAAAAA---TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD945864       --> CAAAAAAAAAA-TATGGCTTCTTCTTCTT---GTTCTACATTTTTCACTT
FD981528       --> ..................................................

               151    -    201
UN17558        --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV532186       <-- TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV571976       <-- TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD942082       <-- TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV544935       <-- TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EY902195       <-- ....................................GAAACACCATTCTC
EX898651       <-- ..........................................CCATTCTC
EX893666       <-- ..................................................
FD530546       <-- ..................................................
FD552478       <-- ..................................................
FD983726       <-- ..................................................
FD977357       <-- ..................................................
EV572630       <-- ..................................................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EW723647       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EX894308       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD556123       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV549466       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EY900592       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EY932785       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV566959       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV567758       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EX746401       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD534685       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD987736       --> TCTCTAGTCAGACCACACTGCACTCT-TTCCTCAGAGAAACACCATTCTC
EV527666       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EW714601       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD981639       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EX890074       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
EV525166       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCGTTCTC
FD945864       --> TCTCTAGTCAGACCACACTGCACTCTCTTCCTCAGAGAAACACCATTCTC
FD981528       --> ..................................................

               201    -    251
UN17558        --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV532186       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV571976       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD942082       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV544935       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EY902195       <-- ACCAAAACCCAGTTTCCAGTTCCCACAAAATCATCAGAATCTAACTTCTT
EX898651       <-- ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EX893666       <-- ...........ATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD530546       <-- ..................................................
FD552478       <-- ..................................................
FD983726       <-- ..................................................
FD977357       <-- ..................................................
EV572630       <-- ..................................................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EW723647       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EX894308       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD556123       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV549466       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EY900592       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EY932785       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV566959       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV567758       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EX746401       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD534685       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD987736       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV527666       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EW714601       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD981639       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EX890074       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
EV525166       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCGGAATCTAACTTCTT
FD945864       --> ACCAAAACCCAATTTCCAGCTCCCACAAAATCATCAGAATCTAACTTCTT
FD981528       --> ..................................................

               251    -    301
UN17558        --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCG  Raphanus sativus var. oleiformis
EV532186       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
EV571976       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
FD942082       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- TGGTCTCAGACTCTCTCCCTCCACCTCT--CGCCCCCCTCTACTCTCCCG  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCG  Raphanus sativus var. oleiformis
FD530546       <-- .......AGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
FD552478       <-- .......AGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
FD983726       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD977357       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV531855       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727881       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV529984       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528107       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
EW723647       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCG  Raphanus sativus cv Early Scarlet Globe
EX894308       --> TGGTCTCAGACTCTCTCCCTCCACCTCTC--GCCCCCCTCTACTCTCCCG  Raphanus sativus cv Early Scarlet Globe
FD556123       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
EV549466       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> TGGTCCCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
EY932785       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCCCC--TCTACTCTCCCG  Raphanus sativus var. oleiformis
EV566959       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
EV567758       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
EX746401       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
FD534685       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
FD987736       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. landra
EV527666       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
EW714601       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCG  Raphanus sativus var. oleiformis
FD981639       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCTCTCCCCTCTACTCTCCCG  Raphanus sativus var. oleiformis
EV525166       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus raphanistrum subsp. maritimus
FD945864       --> TGGTCTCAGACTCTCTCCCTCCACCTCTCTCGCCCCCCTCTACTCTCCCG  Raphanus sativus cv Early Scarlet Globe
FD981528       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN17558        --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV532186       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV571976       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAG-TGCAGAGTGCA
FD942082       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV544935       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EY902195       <-- GTTCTTTCAAAAGCTCGATCTTTGCTAAGGTTAACAAGGGGCAGAGTGCA
EX898651       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EX893666       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD530546       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD552478       <-- GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD983726       <-- .....TTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD977357       <-- ..........................AAGGTAAACAAGGGGCAGAGTGCA
EV572630       <-- ...........................AGGTAAACAAG-TGCAGAGTGCA
EV531855       <-- ............................GGTAACCAAGGGGCAGAGTGCA
EW727881       <-- ..................................................
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EW723647       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EX894308       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD556123       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV549466       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EY900592       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EY932785       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV566959       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAG-TGCAGAGTGCA
EV567758       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAG-TGCAGAGTGCA
EX746401       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD534685       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD987736       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV527666       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EW714601       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD981639       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EX890074       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
EV525166       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD945864       --> GTTCTTTCAAAAGCTCAATCTTTGCTAAGGTAAACAAGGGGCAGAGTGCA
FD981528       --> ..................................................

               351    -    401
UN17558        --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV532186       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV571976       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD942082       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV544935       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EY902195       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTGAAGA
EX898651       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EX893666       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD530546       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD552478       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD983726       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD977357       <-- CCAGACTTCACACTAAAGGATCAAAACGAAAA-GCCGGTGAGCCTCAAGA
EV572630       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV531855       <-- CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EW727881       <-- ......................AAAACGGAAAAGCCGGTGAGCCTCAAGA
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EW723647       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EX894308       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD556123       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV549466       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EY900592       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EY932785       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV566959       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV567758       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EX746401       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD534685       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD987736       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV527666       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EW714601       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD981639       --> CCAGACTTCACACTAAAGGATCAAAACGAAAA-GCCGGTGAGCCTCAAGA
EX890074       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
EV525166       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD945864       --> CCAGACTTCACACTAAAGGATCAAAACGGAAA-GCCGGTGAGCCTCAAGA
FD981528       --> ..................................................

               401    -    451
UN17558        --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- AGTATAAA-GGGAAGCCTGTTGTTCCATATTTTTACCCTGCAG-ATGAAA
EV532186       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV571976       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD942082       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV544935       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EY902195       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EX898651       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EX893666       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD530546       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD552478       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD983726       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD977357       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV572630       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV531855       <-- AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCTTGCAG-ATGAAA
EW727881       <-- AGTATAAAAGGGAAGCCTGTTGTTCTATATTTTTACCCTGCAGGATGAAA
EX750815       <-- ..................................................
EV529984       <-- ..................................................
EV528107       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EW723647       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EX894308       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD556123       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV549466       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EY900592       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EY932785       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV566959       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV567758       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EX746401       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD534685       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD987736       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV527666       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCTTGCAG-ATGAAA
EW714601       --> AGTATAAA-GGGAAGCCTGTTGTTCCATATTTTTACCCTGCAG-ATGAAA
FD981639       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EX890074       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
EV525166       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD945864       --> AGTATAAA-GGGAAGCCTGTTGTTCTATATTTTTACCCTGCAG-ATGAAA
FD981528       --> ................................gTACCCTGCAC-ATGAAA

               451    -    501
UN17558        --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTAATGAGA
EV532186       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV571976       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD942082       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV544935       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EY902195       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX898651       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX893666       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD530546       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD552478       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD983726       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD977357       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV572630       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV531855       <-- -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGGGACTCTTATGAGA
EW727881       <-- ACCCC-TGGCTGCACCGAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX750815       <-- ..CCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV529984       <-- ............................................ATGAGA
EV528107       --> -CCCCCTGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EW723647       --> -CCCC-TGGCTGCACCGAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX894308       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD556123       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV549466       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EY900592       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EY932785       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV566959       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV567758       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX746401       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD534685       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD987736       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV527666       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGGGACTCTTATGAGA
EW714601       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTAATGAGA
FD981639       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EX890074       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
EV525166       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGGGACTCTTATGAGA
FD945864       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA
FD981528       --> -CCCC-TGGCTGCACCAAGCAGGCTTGTGCTTTCAGAGACTCTTATGAGA

               501    -    551
UN17558        --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV532186       <-- AA-TTCAAGAAGGCCAGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV571976       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD942082       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV544935       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EY902195       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX898651       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX893666       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD530546       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD552478       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD983726       <-- AA-TTCAAGAAGGCCGGCGCATAGGTCATT-GGCATAAGTGGTGATGATT
FD977357       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV572630       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV531855       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EW727881       <-- AAATTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX750815       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV529984       <-- AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV528107       --> AA-TTCAAGAAGGCCAGCGCAGAGGTCATTTGGCATAAGTGGTGATGATT
EW723647       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX894308       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD556123       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV549466       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EY900592       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EY932785       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV566959       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV567758       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX746401       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD534685       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD987736       --> AA-TTCAAGAAGGCCGGCGCATAGGTCATT-GGCATAAGTGGTGATGATT
EV527666       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EW714601       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD981639       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EX890074       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
EV525166       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD945864       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT
FD981528       --> AA-TTCAAGAAGGCCGGCGCAGAGGTCATT-GGCATAAGTGGTGATGATT

               551    -    601
UN17558        --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus var. oleiformis
EV532186       <-- CTGCTTCCC-ACAAGGCTTTTGCATGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EV571976       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
FD942082       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCTTACACATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus var. oleiformis
FD530546       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
FD552478       <-- TTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
FD983726       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
FD977357       <-- CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
EV531855       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EW727881       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EV529984       <-- TTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EV528107       --> CTGCTTCCCCACAAGagctt..............................  Raphanus raphanistrum subsp. maritimus
EW723647       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
EX894308       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
FD556123       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
EV549466       --> CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EY932785       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus var. oleiformis
EV566959       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
EV567758       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
EX746401       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
FD534685       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
FD987736       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. landra
EV527666       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCGAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
EW714601       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus var. oleiformis
FD981639       --> CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus var. oleiformis
EV525166       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. maritimus
FD945864       --> CTGCTTCCC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus sativus cv Early Scarlet Globe
FD981528       --> CTGCTTCTC-ACAAGGCTTTTGCAAGCAAATACAAGCTTCCATACACATT  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17558        --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- GTTGAGTGACGAAGTGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus var. oleiformis
EV532186       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-ATTGCCTGGA  Raphanus raphanistrum subsp. maritimus
EV571976       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
FD942082       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus var. oleiformis
FD530546       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
FD552478       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
FD983726       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
FD977357       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
EV531855       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGA.................  Raphanus raphanistrum subsp. maritimus
EW727881       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
EV529984       <-- GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
EV528107       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW723647       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
EX894308       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
FD556123       --> GTTGAGTGACGAAGGG..................................  Raphanus raphanistrum subsp. landra
EV549466       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
EY932785       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus var. oleiformis
EV566959       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
EV567758       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
EX746401       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
FD534685       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
FD987736       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. landra
EV527666       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGGGAGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
EW714601       --> GTTGAGTGACGAAGTGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus var. oleiformis
FD981639       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus var. oleiformis
EV525166       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. maritimus
FD945864       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGACTGGGG-AGTGCCTGGA  Raphanus sativus cv Early Scarlet Globe
FD981528       --> GTTGAGTGACGAAGGGAATAAGGTGAGGAAAGATTGGGG-AGTGCCTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN17558        --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV532186       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV571976       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD942082       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV544935       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EY902195       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EX898651       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EX893666       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD530546       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD552478       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD983726       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD977357       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV572630       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV531855       <-- ..................................................
EW727881       <-- GTTCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGAC.....
EX750815       <-- GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV529984       <-- GATTTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV528107       --> ..................................................
EW723647       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EX894308       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD556123       --> ..................................................
EV549466       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EY900592       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EY932785       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV566959       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV567758       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EX746401       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD534685       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD987736       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV527666       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGAC.....
EW714601       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD981639       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EX890074       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
EV525166       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA
FD945864       --> GATCTGTTTGGGGCATTGCCAGGGAG-CAGACTTATGTTCTTGACAAAAc
FD981528       --> GATCTGTTTGGGGCATTGCCAGGGAGGCAGACTTATGTTCTTGACAAAAA

               701    -    751
UN17558        --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus var. oleiformis
EV532186       <-- CGGTGTCTTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
EV571976       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
FD942082       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- CGGCGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus var. oleiformis
FD530546       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
FD552478       <-- CGGTGTCGTTCAGCTCATTTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
FD983726       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
FD977357       <-- CGGCGTCGTTCAGCTCATTTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- CGGTGTCGTTCAGCTCATTTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
EV531855       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727881       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
EV529984       <-- CGGTGTCGTTCAGTTCATTTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
EV528107       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW723647       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus cv Early Scarlet Globe
EX894308       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus cv Early Scarlet Globe
FD556123       --> ..................................................  Raphanus raphanistrum subsp. landra
EV549466       --> CGGCGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
EY932785       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus var. oleiformis
EV566959       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
EV567758       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. landra
EX746401       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
FD534685       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
FD987736       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTG.........  Raphanus raphanistrum subsp. landra
EV527666       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW714601       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus var. oleiformis
FD981639       --> CGGCGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus sativus var. oleiformis
EV525166       --> CGGTGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. maritimus
FD945864       --> gt................................................  Raphanus sativus cv Early Scarlet Globe
FD981528       --> CGGCGTCGTTCAGCTCATCTACAACAACCAGTTCCAGCCTGAGAAACACA  Raphanus raphanistrum subsp. raphanistrum (NY)

               751    -    801
UN17558        --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus var. oleiformis
EV532186       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. maritimus
EV571976       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. landra
FD942082       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- TTGATGAGACCTTGAAGTTCCTCAAAGCTGCTTGATCCCTTGTCGTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- TTGATGAGACCTTGAAATTCCTCACAGCTGCTTGATC-CTTGCCTTCTTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTG................  Raphanus sativus var. oleiformis
FD530546       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. maritimus
FD552478       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. landra
FD983726       <-- TTGATGAGACCTTAAAGTTCCTCAAATCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. landra
FD977357       <-- TTGATGAGACCTTGAAGTTCCTCAAAGCTGCTTGATCCCTTGTCGTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTTTTTTCTTC  Raphanus raphanistrum subsp. landra
EV531855       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727881       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTTTCTTCTTC  Raphanus raphanistrum subsp. maritimus
EV529984       <-- TTGATGAGACTTTAAAGTTCCTCAAAGCTGCT..................  Raphanus raphanistrum subsp. maritimus
EV528107       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW723647       --> TTGATGAGACCTTAAAGTTCCTCAA-GCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus cv Early Scarlet Globe
EX894308       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus cv Early Scarlet Globe
FD556123       --> ..................................................  Raphanus raphanistrum subsp. landra
EV549466       --> TTGATGAGACCTTGAAGTTCCTCAAAGCTGCTTGATCCCTTGTCGTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> TTGATGAGACCTTAAAGTTCCTCAA-GCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. maritimus
EY932785       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus var. oleiformis
EV566959       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. landra
EV567758       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. landra
EX746401       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. maritimus
FD534685       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTG................  Raphanus raphanistrum subsp. maritimus
FD987736       --> ..................................................  Raphanus raphanistrum subsp. landra
EV527666       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW714601       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus var. oleiformis
FD981639       --> TTGATGAGACCTTGAAGTTCCTCAAAGCTGCTTGATCCCTTGTCGTCTT-  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> TTGATGAGACCTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus sativus var. oleiformis
EV525166       --> TTGATGAGACTTTAAAGTTCCTCAAAGCTGCTTGATC--TTCTCTTCTTC  Raphanus raphanistrum subsp. maritimus
FD945864       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD981528       --> TTGATGAGACCTTGAAGTTCCTCAAAGCTGCTTGATCCCTTGTCGTCTTC  Raphanus raphanistrum subsp. raphanistrum (NY)

               801    -    851
UN17558        --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus sativus var. oleiformis
EV532186       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. maritimus
EV571976       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
FD942082       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus sativus cv Early Scarlet Globe
EV544935       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY902195       <-- CTCTTCTGGATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX898651       <-- CTCTTCTGCATCTT-ACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus sativus cv Early Scarlet Globe
EX893666       <-- ..................................................  Raphanus sativus var. oleiformis
FD530546       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. maritimus
FD552478       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
FD983726       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
FD977357       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV572630       <-- CTTTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
EV531855       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EW727881       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EX750815       <-- CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. maritimus
EV529984       <-- ..................................................  Raphanus raphanistrum subsp. maritimus
EV528107       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW723647       --> CTCTTCTGCATCTTTACAAAACAA..........................  Raphanus sativus cv Early Scarlet Globe
EX894308       --> -TCTTCTGCATCTT-ACAAAACAACAATTCATGACCTTCCTTTATTGT-C  Raphanus sativus cv Early Scarlet Globe
FD556123       --> ..................................................  Raphanus raphanistrum subsp. landra
EV549466       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY900592       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EY932785       --> CTCTTCTGCATCTTTACAAAcacaa.........................  Raphanus sativus var. oleiformis
EV566959       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
EV567758       --> CTCTTCTGCATCTTTACAAA-CAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. landra
EX746401       --> CTCTTCTGCATCTTTACAAA-CAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. maritimus
FD534685       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD987736       --> ..................................................  Raphanus raphanistrum subsp. landra
EV527666       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EW714601       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus sativus var. oleiformis
FD981639       --> CTCTTCTGCATCTTTACAAA-CAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX890074       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus sativus var. oleiformis
EV525166       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTC  Raphanus raphanistrum subsp. maritimus
FD945864       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD981528       --> CTCTTCTGCATCTTTACAAAACAACAATTCATGACCTTCCTTTATTGTTA  Raphanus raphanistrum subsp. raphanistrum (NY)

               851    -    901
UN17558        --> TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- TCATTGCTGTTTTCCC-AATGACTCCTATTCAAAACACCAAACTTGATAA
EV532186       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
EV571976       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
FD942082       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
EV544935       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATA-
EY902195       <-- TCATTGCTGTTTTCCCCAATGACTCCAATTCAAAACACCAAACTTGATAA
EX898651       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
EX893666       <-- ..................................................
FD530546       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
FD552478       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAGAACACCAAACTTGATAA
FD983726       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
FD977357       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATA-
EV572630       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA
EV529984       <-- ..................................................
EV528107       --> ..................................................
EW723647       --> ..................................................
EX894308       --> TCATTGCTGTTT......................................
FD556123       --> ..................................................
EV549466       --> TCATTGCTGTTTTCCC-AATGACTCCAATT....................
EY900592       --> ..................................................
EY932785       --> ..................................................
EV566959       --> TCATTGCTGTTTTCCC-AATGACTCCAATT....................
EV567758       --> TCATTGCTGTTTT.....................................
EX746401       --> TCATTGCTGTTTTCC--AATGACTCC........................
FD534685       --> ..................................................
FD987736       --> ..................................................
EV527666       --> ..................................................
EW714601       --> TCATTGCTGTTTTCCC-AATGACTCCTATTCAAA-CACCAA-CTTGATAt
FD981639       --> TCATTGCTGTTT-CCC--ATGACTCCAtcaaacaccaacttg........
EX890074       --> TCATTGCTGTTTTCCC-AATGACTCCTATTCAAA-CACCAAACTTGATA-
EV525166       --> TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATA.
FD945864       --> ..................................................
FD981528       --> TCATTGCTGTTTTCCC-AATGACTCCAATTCAAAACACCAAACTTGATAA

               901    -    951
UN17558        --> TAAAACAAAATATAAGAGTTTAATTTCACAAAAATTTCTAAATTACAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EW719436       <-- TAAAACAAAATATAAGAGTTTAATTTCtc.....................
EV532186       <-- ..................................................
EV571976       <-- TAAAACAAAATATAAGAGTTTAATTaaag.....................
FD942082       <-- TAAAACAAAATATAAGAGTTTAATTcc.......................
EV544935       <-- -AAAACAAAATATAAGAGTTTAATTTCACAAAAATTTCTAAATTACAGTT
EY902195       <-- TAAAACAAAATATAAGAGTTTAATTTCAC.....................
EX898651       <-- TAAAACAAAATATAAGAGTTTAATTcc.......................
EX893666       <-- ..................................................
FD530546       <-- ..................................................
FD552478       <-- TAAAACAAAATATAAGAGTTTAATTTCACAAAAATTTttg..........
FD983726       <-- TAAAACAAAATATAAGAGTTTAATTTCAC.....................
FD977357       <-- -AAAACAAAATATAAGAGTTTAATTTCAt.....................
EV572630       <-- TAAAACAAAATATAAGAGTTTAATTaaag.....................
EV531855       <-- ..................................................
EW727881       <-- ..................................................
EX750815       <-- TAAAACAAAATATAAGAGTTTAATTT........................
EV529984       <-- ..................................................
EV528107       --> ..................................................
EW723647       --> ..................................................
EX894308       --> ..................................................
FD556123       --> ..................................................
EV549466       --> ..................................................
EY900592       --> ..................................................
EY932785       --> ..................................................
EV566959       --> ..................................................
EV567758       --> ..................................................
EX746401       --> ..................................................
FD534685       --> ..................................................
FD987736       --> ..................................................
EV527666       --> ..................................................
EW714601       --> aaa...............................................
FD981639       --> ..................................................
EX890074       --> TAAA-CAAA-TATA-GAGTTTA-TTTCACAAAA-TTTCT...........
EV525166       --> ..................................................
FD945864       --> ..................................................
FD981528       --> aaa...............................................

               951    -   1001
UN17558        --> AAGTCTTCTAAATT
                   ~~~~~~~~~~~~~~
EW719436       <-- ..............
EV532186       <-- ..............
EV571976       <-- ..............
FD942082       <-- ..............
EV544935       <-- AAGTCTTCTAAATT
EY902195       <-- ..............
EX898651       <-- ..............
EX893666       <-- ..............
FD530546       <-- ..............
FD552478       <-- ..............
FD983726       <-- ..............
FD977357       <-- ..............
EV572630       <-- ..............
EV531855       <-- ..............
EW727881       <-- ..............
EX750815       <-- ..............
EV529984       <-- ..............
EV528107       --> ..............
EW723647       --> ..............
EX894308       --> ..............
FD556123       --> ..............
EV549466       --> ..............
EY900592       --> ..............
EY932785       --> ..............
EV566959       --> ..............
EV567758       --> ..............
EX746401       --> ..............
FD534685       --> ..............
FD987736       --> ..............
EV527666       --> ..............
EW714601       --> ..............
FD981639       --> ..............
EX890074       --> ..............
EV525166       --> ..............
FD945864       --> ..............
FD981528       --> ..............