1      -     51
UN17635        --> GGAAATCCCAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- .......ggAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. landra
EV574600       <-- .......ggAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. landra
EX753060       <-- ............GAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. maritimus
EX766661       <-- .............gGGAGAAACGAGAAGAAACAGAGAGAAGACAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- ..................................gggGAAGACAAAA---  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> GGAAATCCCAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGA-AAAAA--  Raphanus raphanistrum subsp. landra
EV569198       --> .......ggAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. landra
EV570263       --> .......ggAAGGAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. landra
EX749343       --> ............GAGGAGAAACGAGAAGAAACAGCGAGAAGAGAAAAA--  Raphanus raphanistrum subsp. maritimus
EY908943       --> ............GAGGAGAAACGAGAAGAAACAGAGAGAAGACAAAAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> .............gGGAGAAACGAGAAGAAACAGAGAGAAGACAAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> ..................................gggGAAGACAAAAA--  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> ..................................ggagagagagaagaga  Raphanus raphanistrum subsp. maritimus
EV565541       --> ..................................................  Raphanus raphanistrum subsp. landra

               51     -    101
UN17635        --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EV574600       <-- GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EX753060       <-- GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EX766661       <-- GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
FD539938       <-- -AAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATTCCTGCTCGCA
EV565542       --> --AGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EV569198       --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EV570263       --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EX749343       --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EY908943       --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
EX762398       --> GTAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATCCCTGCTCGCA
FD544296       --> --AGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATTCCTGCTCGCA
EV525566       --> aaAGTAGTTTGAATCAAATATGGCTGGGAGAGCTTCGATTCCTGCTCGCA
EV565541       --> ..................................................

               101    -    151
UN17635        --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EV574600       <-- ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EX753060       <-- ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACCGTTGTTGGATTC
EX766661       <-- ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
FD539938       <-- ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EV565542       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTCGGATTC
EV569198       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EV570263       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EX749343       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACCGTTGTTGGATTC
EY908943       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EX762398       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
FD544296       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EV525566       --> ACTCTGCCCTCATCGCTATGATCGCTGACGAGGACACTGTTGTTGGATTC
EV565541       --> ..................................................

               151    -    201
UN17635        --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. landra
EV574600       <-- TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. landra
EX753060       <-- TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. maritimus
EX766661       <-- TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- TTGATGGCTGGAGTTGGTAATGTTGACATAAAGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. landra
EV569198       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. landra
EV570263       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. landra
EX749343       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. maritimus
EY908943       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAAGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> TTGATGGCTGGAGTTGGTAATGTTGACATAAGGAGGAAGACTAATTACCT  Raphanus raphanistrum subsp. maritimus
EV565541       --> ..................................................  Raphanus raphanistrum subsp. landra

               201    -    251
UN17635        --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. landra
EV574600       <-- CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. landra
EX753060       <-- CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. maritimus
EX766661       <-- TATTGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- TATTGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. landra
EV569198       --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. landra
EV570263       --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. landra
EX749343       --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. maritimus
EY908943       --> TATTGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> TATTGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> TATTGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> CATCGTGGATTCAAAGACAACGGTGAGACAAATTGAGGATGCTTTCAAGG  Raphanus raphanistrum subsp. maritimus
EV565541       --> ..................................................  Raphanus raphanistrum subsp. landra

               251    -    301
UN17635        --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. landra
EV574600       <-- AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. landra
EX753060       <-- AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. maritimus
EX766661       <-- AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- AATTCTCATCAAGAGATGATATTGCTATCATCCTCATCGGCCAATATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. landra
EV569198       --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. landra
EV570263       --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. landra
EX749343       --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. maritimus
EY908943       --> AATTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> AGTTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> AATTCTCATCAAGAGATGATATTGCTATCATCCTCATCGGCCAATATGTT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> AATTCTCATCAAGAGATGATATTGCTATCATCCTCATCAGCCAATATGTT  Raphanus raphanistrum subsp. maritimus
EV565541       --> ..................................................  Raphanus raphanistrum subsp. landra

               301    -    351
UN17635        --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. landra
EV574600       <-- GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. landra
EX753060       <-- GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. maritimus
EX766661       <-- GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTCCCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. landra
EV569198       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. landra
EV570263       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. landra
EX749343       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. maritimus
EY908943       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTCCCTGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> GCCAATATGATCAGGTTCTTGGTGGATAGCTACAACAAGCCAGTTCCTGC  Raphanus raphanistrum subsp. maritimus
EV565541       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN17635        --> GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra
EV574600       <-- GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra
EX753060       <-- GATCCTGGAGATCCCTTCCAAGGATCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. maritimus
EX766661       <-- AATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra
EV569198       --> GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra
EV570263       --> GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra
EX749343       --> GATCCTGGAGATCCCTTCCAAGGATCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. maritimus
EY908943       --> AATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> AATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> GATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> AATCCTGGAGATCCCTTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. maritimus
EV565541       --> ...............TTCCAAGGACCATCCTTATGATCCTGCTCATGACT  Raphanus raphanistrum subsp. landra

               401    -    451
UN17635        --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra
EV574600       <-- CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra
EX753060       <-- CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. maritimus
EX766661       <-- CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCGGAATCTGTGTCACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCGGAATCTGTCTCACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra
EV569198       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra
EV570263       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra
EX749343       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. maritimus
EY908943       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCGGAATCTGTGTCACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCGGAATCTGTGTCACAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCGGAATCTGTCTCACAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. maritimus
EV565541       --> CTGTTCTCTCCCGTGTCAAGTACCTCTTCTCTGCTGAATCTGTGTCACAG  Raphanus raphanistrum subsp. landra

               451    -    501
UN17635        --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra
EV574600       <-- CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra
EX753060       <-- CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. maritimus
EX766661       <-- CGTTAAAACATATAC-ATCCTGCAAAAGCT--TGCTGAGCTTTTTATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- CGTTAAAACATATAC-ATCCTGCAAAAGCT--TGCTGAGCTTTTTATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra
EV569198       --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra
EV570263       --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra
EX749343       --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. maritimus
EY908943       --> CGTTAAAACATATAC-ATCCTGCAAAAGCTT--GCTGAGCTTTTTATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> CGTTAAAACATATAC-ATCCTGCAAAAGCTT--GCTGAGCTTTTTATATT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> CGTTAAAACATATAC-ATCCTGCAAAAGCTT--GCTGAGCTTTTTATATT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> CGTTGAAACATATAC-ATCCTGCAAA-GCTT--GCTAAGCTTT--ATATC  Raphanus raphanistrum subsp. maritimus
EV565541       --> CGTTAAAACATATACCATCCTGCAAA-GCTTTTGCTGAGCTTTTTATATC  Raphanus raphanistrum subsp. landra

               501    -    551
UN17635        --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra
EV574600       <-- ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra
EX753060       <-- ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. maritimus
EX766661       <-- ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra
EV569198       --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra
EV570263       --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra
EX749343       --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. maritimus
EY908943       --> ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> ATTTGTTTG-TTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. maritimus
EV565541       --> ATTTGTTTGGTTTTTGACATTCTTGTATTTCTCAGTTTTCAATAATGTAT  Raphanus raphanistrum subsp. landra

               551    -    601
UN17635        --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra
EV574600       <-- CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra
EX753060       <-- CTCTTGATTTTTATTTGGAAATGGATGTTATA-TCAGTAAGAAGGAAATG  Raphanus raphanistrum subsp. maritimus
EX766661       <-- CTCTTGATTTTTATTTGGAAATGGATGTTATA-TCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD539938       <-- CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGCAA-TG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV565542       --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra
EV569198       --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra
EV570263       --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra
EX749343       --> CTCTTGATTTTTATTTGGAAATGGATGTTATA-TCAGTAAGAAGGAAATG  Raphanus raphanistrum subsp. maritimus
EY908943       --> CTCTTGATTTTTATTTGGAAATGGATGTTATA-TCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX762398       --> CTCTTGATTTTTATTTGGAAATGGATGTTATA-TCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544296       --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGCAA-TG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV525566       --> CTCTTGATTTTT......................................  Raphanus raphanistrum subsp. maritimus
EV565541       --> CTCTTGATTTTTATTTGGAAATGGATGTTATAATCAGTAAGAAGGAA-TG  Raphanus raphanistrum subsp. landra

               601    -    651
UN17635        --> ATAACACCATCTGGTTCTTTTTGCATTAAATAAAGAGAGTGAGTCTGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- ATAACACCg.........................................
EV574600       <-- ATAACACCg.........................................
EX753060       <-- ATAACACCATCTGGTTCTTTTTGCATTAAATAAAGAGAGTGAGTCTCTTG
EX766661       <-- ATAA..............................................
FD539938       <-- ATAACgcc..........................................
EV565542       --> ATAGCACCATCTGGTTCTTTTTGCATTAGATAAAGAGAGTGAGTCTGTTG
EV569198       --> ATAACACCg.........................................
EV570263       --> ATAACACCg.........................................
EX749343       --> ATAACACCATCTGGTTCTTTTTGCATTAAATAAAGAGAGTGAGTCTCTTG
EY908943       --> ATAACACCATCTGGTTCTTTTTGCATTAAATAAAGAGAGTGAGTCTGTTG
EX762398       --> ATAACACCATCTGGTTCTTTTTGCATTAAATAAAGAGAGTGAGTCTGTTG
FD544296       --> ATAACgcc..........................................
EV525566       --> ..................................................
EV565541       --> ATAGCACCATCTGGTTCTTTTTGCATTAGATAAAGA-AGTGAGTCTGTTG

               651    -    701
UN17635        --> TGTATAACAAGAGACAAGAGCAGACTTTAAAGATTTTAAGTGAAGACTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV573784       <-- ..................................................
EV574600       <-- ..................................................
EX753060       <-- TGTATAACAAGAGACAAGAGCAGACTTT......................
EX766661       <-- ..................................................
FD539938       <-- ..................................................
EV565542       --> TGTATAACAAGAGACAAGAGCAAACTTTAAAGATTTTAAGTGAAGACTTT
EV569198       --> ..................................................
EV570263       --> ..................................................
EX749343       --> TGTATAACAAGAGACAAGAGCAGACTTT......................
EY908943       --> TGTAT.............................................
EX762398       --> TGTATAACAAGAGACAAGAGCAGACTTTAAAGATTTTAAGTGAAGACTTT
FD544296       --> ..................................................
EV525566       --> ..................................................
EV565541       --> TGTATAACAAGAGACAAGAGCA-ACTTT......................

               701    -    751
UN17635        --> CAGCTCAAAAAAAAA
                   ~~~~~~~~~~~~~~~
EV573784       <-- ...............
EV574600       <-- ...............
EX753060       <-- ...............
EX766661       <-- ...............
FD539938       <-- ...............
EV565542       --> CAGCT..........
EV569198       --> ...............
EV570263       --> ...............
EX749343       --> ...............
EY908943       --> ...............
EX762398       --> CAGCTCAAAAAAAAA
FD544296       --> ...............
EV525566       --> ...............
EV565541       --> ...............