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Alignment for radish unigene UN17636

               1      -     51
UN17636        --> GGGCAAGAAGTAGAATAGTATTTAAAAGTAACTTTAAATGTTGTTCAGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- ..................................................
EV569438       <-- ..................................................
EX765834       <-- ..................................................
FD550765       <-- ..................................................
FD580382       <-- ..................................................
FD541105       <-- ..................................................
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> GGGCAAGAAGTAGAATAGTATTTAAAAGTAAATTTAAATGTTGTTCACGC
EX769554       --> ................gGTATTTAAAAGTAACTTTAAATGTTGTTCAGGC
EV573984       --> .......................................GTTGTTCAGGC
EX769590       --> ..................................................
FD546675       --> ..................................................
EV543969       --> ..................................................
EX776144       --> ..................................................

               51     -    101
UN17636        --> AAAACCATCAAAGACCAAACCTGTATTCATTATTA---CATTAAGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- ........................ATTCATTATTA---CATTAAGTTCTT
EV569438       <-- .....................attcattATTATTA---CATTAAGTTCTT
EX765834       <-- ..................................................
FD550765       <-- ..................................................
FD580382       <-- ..................................................
FD541105       <-- ..................................................
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> AAAACCATCAAAGACCAAACCTGTATTCATTATTA---CATTAAGTTCTT
EX769554       --> AAAACCATCAAAGACCAAACCTGTATTCATTATTA---CATTAAGTTCTT
EV573984       --> AAAACCATCAAAGACCAAACCTTTATTCATTATTATTACATTAAGTTCTT
EX769590       --> ............ggCCAAACCTGTATTCATTATTA---CATTAAGTTCTT
FD546675       --> ...........cggCCAAACCTGTATTCATTATTA---CATTAAGTTCTT
EV543969       --> ....................CTGTATTCATTATTA---CATTAAGTTCTT
EX776144       --> ..................................................

               101    -    151
UN17636        --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
EV569438       <-- GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAA-TC
EX765834       <-- ....aaagtggACTCAGCAGTTCAA-CTACAGACAGAGCATACATAA-TC
FD550765       <-- ..................................................
FD580382       <-- ..................................................
FD541105       <-- ..................................................
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> GAAAAGTTGGAACTCAGCAGTTCAAACTTTAGACAGAGCATACATAA-TC
EX769554       --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
EV573984       --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAA-TC
EX769590       --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
FD546675       --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
EV543969       --> GAAAAGTTGGAACTCAGCAGTTCAAACTACAGACAGAGCATACATAAATC
EX776144       --> ..................................................

               151    -    201
UN17636        --> TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EV569438       <-- TTTACTTAAGTCCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EX765834       <-- TTTACTTAAGTTCACTGTTT--GTGTTT-AAGAAGAAGCTGCTTCAAACG
FD550765       <-- ..........TTCACTGTTT--GTGTTT-AAGAAGAAGCTGCTTCAAACG
FD580382       <-- ................tTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
FD541105       <-- .......................................TGCTTCAAACG
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> TTTACTTAAGTTCACTGTTTTTGTGTTTTAAGAAGAAGCTGCTTCAAACG
EX769554       --> TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EV573984       --> TTTACTTAAGTCCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EX769590       --> TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
FD546675       --> TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EV543969       --> TTTACTTAAGTTCACTGTTTT-GTGTTTTAAGAAGAAGCTGCTTCAAACG
EX776144       --> .................................aaAAGCTGCTTCAAACG

               201    -    251
UN17636        --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
EV569438       <-- CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
EX765834       <-- CACTCTGGA-TGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCGCG
FD550765       <-- CACTCTGGA-TGTCACAGGCGGTTGTGCACCGCTCAGTTTCAC-TTCGCG
FD580382       <-- CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACTTTCCCG
FD541105       <-- CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCAC-TTCCCG
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
EX769554       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCGCG
EV573984       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
EX769590       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCGCG
FD546675       --> CACTCTGGAATGTCACAGGCGGTTGTGCACCGCTCAGTTTCACCTTCGCG
EV543969       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG
EX776144       --> CACTCTGGAATGTCTCAGGCGGTTGTGCACCGCTCAGTTTCACCTTCCCG

               251    -    301
UN17636        --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
EV569438       <-- TTGATAGTGTAATGTGGAACCCCCAGTGATATTCTGCGAATACTTCTTCA
EX765834       <-- TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
FD550765       <-- TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
FD580382       <-- TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
FD541105       <-- TTGATAGTGTAATGTGGAACCCC-AGTGATAT-CTGCGAATACTTCTCCA
FD966011       <-- ..................................................
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
EX769554       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
EV573984       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTTCA
EX769590       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
FD546675       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
EV543969       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTCCA
EX776144       --> TTGATAGTGTAATGTGGAACCCC-AGTGATATTCTGCGAATACTTCTTCA

               301    -    351
UN17636        --> GCTCTTCTTTTACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- GCTCTTCTTTTACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
EV569438       <-- GCTCTTCTTTTACCTCTGTGGTTCCATTGGTGGGCTCTGAGAGGAATACT
EX765834       <-- GCTCTTCTTTTACCTCTGTGGTTCCATTATTGGGCTCTGAGAGGAATACT
FD550765       <-- GCTCTTCTTTTACCTCTGTGGTTCCATTATTGGGCTCTGAGAGGAATACT
FD580382       <-- GCTCTTCTTTTACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
FD541105       <-- GCTCTTCTTT-ACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
FD966011       <-- ............CCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
EX772112       <-- ..................................................
EX765878       <-- ..................................................
FD944944       --> GCTCTTCTTTTACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
EX769554       --> GCTCTTCTTTTACCTCTGTGGTTCCATTATTGGGCTCTGAGAGGAATACT
EV573984       --> GCTCTTCTTTTACCTCTGTGGTTCCATTGGTGGGCTCTGAGAGGAATACT
EX769590       --> GCTCTTCTTTTACCTCTGTGGTTCCATTATTGGGCTCTGAGAGGAATACT
FD546675       --> GCTCTTCTTTTACCTCTGTGGTTCCATTATTGGGCTCTGAGAGGAATACT
EV543969       --> GCTCTTCTTTTACCTCTGTGGTTCCATTGTTGGGCTCTGAGAGGAATACT
EX776144       --> GCTCTTCTTTTACCTCTGTGGTTCCATTGGTGGGCTCTGGGAGGAATACT

               351    -    401
UN17636        --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EV569438       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX765834       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
FD550765       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
FD580382       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
FD541105       <-- TCTGCTCCGTCTGTGCCAAGCTTCTTAGCCGTCTCAGCCAGAAACTCCCT
FD966011       <-- TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX772112       <-- .....................TTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX765878       <-- ..................................................
FD944944       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX769554       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EV573984       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX769590       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
FD546675       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EV543969       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT
EX776144       --> TCTGCTCCGTCTATGCCAAGCTTTTTAGCCGTCTCAGCCAGAAACTCCCT

               401    -    451
UN17636        --> GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EV569438       <-- GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX765834       <-- GTCCCCTATATACTTTCCCTGTGTGAAGTAACCAAGACACAACTCTTCAA
FD550765       <-- GTCCCCTATATACTTTCCCTGTGTGAAGTAACCAAGACACAACTCTTCAA
FD580382       <-- GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
FD541105       <-- GTCCCCTATGTACTTTCCCTGGGTGAAGTAACCAAGACACAACTCTTCAA
FD966011       <-- GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX772112       <-- GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX765878       <-- ..................................................
FD944944       --> GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX769554       --> GTCCCCTATATACTTTCCCTGTGTGAAGTAACCAAGACACAACTCTTCAA
EV573984       --> GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX769590       --> GTCCCCTATATACTTTCCCTGTGTGAAGTAACCAAGACACAACTCTTCAA
FD546675       --> GTCCCCTATATACTTTCCCTGTGTGAAGTAACCAAGACACAACTCTTCAA
EV543969       --> GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA
EX776144       --> GTCCCCTATGTACTTTCCCTGCGTGAAGTAACCAAGACACAACTCTTCAA

               451    -    501
UN17636        --> CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCACATAATGTATGAGT
EV569438       <-- CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
EX765834       <-- CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
FD550765       <-- CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
FD580382       <-- CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
FD541105       <-- CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
FD966011       <-- CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
EX772112       <-- CAAGGCTATGTTGTGTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
EX765878       <-- ..................................................
FD944944       --> CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
EX769554       --> CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
EV573984       --> CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT
EX769590       --> CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
FD546675       --> CAAGGCTATGTTGTTTATCCGGAGCTTGTTTCCCCGCATAATGTATGAGT
EV543969       --> CAAGGCTATGTTGTTTATCCGGCGCTTGTTTCCCCACATAATGTATGAGT
EX776144       --> CAAGGCTATGTTGTGTATCCGGCGCTTGTTTCCCCGCATAATGTATGAGT

               501    -    551
UN17636        --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EV569438       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX765834       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCACACTCTAA
FD550765       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
FD580382       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
FD541105       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
FD966011       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX772112       <-- CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX765878       <-- ..................................................
FD944944       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX769554       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCACACTCTAA
EV573984       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX769590       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
FD546675       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EV543969       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA
EX776144       --> CTATGACTATCCAGAGTGTTGCCTGTGAGACCGGATGTGTCATACTCTAA

               551    -    601
UN17636        --> CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EV569438       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EX765834       <-- CCCAATACCTTTGAAGATCCCAAACATTCTTCTGAACATTGCTTCAACCC
FD550765       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
FD580382       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
FD541105       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
FD966011       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EX772112       <-- CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EX765878       <-- .....................AGACATTCTTCTGAACATTGCTTCAACTC
FD944944       --> CCCAATACCTTTGAAGATCTC.............................
EX769554       --> CCCAATACCTTTGAAGATCCCAAACATTCTTCTGAACATTGCTTCAACCC
EV573984       --> CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EX769590       --> CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
FD546675       --> CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC
EV543969       --> CCCAATACCTTTGAAGATCTCAAACATTCTTCTGAACATTGCTTCAACTC
EX776144       --> CCCAATACCTTTGAAGATCTCAGACATTCTTCTGAACATTGCTTCAACTC

               601    -    651
UN17636        --> TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569438       <-- TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. landra
EX765834       <-- TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550765       <-- TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTCCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD580382       <-- TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus sativus cv Rat-Tail Radish #3870
FD541105       <-- TGCTTCCAAACCTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD966011       <-- TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. maritimus
EX772112       <-- TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. landra
EX765878       <-- TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTATTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD944944       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX769554       --> TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV573984       --> TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. landra
EX769590       --> TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTATTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD546675       --> TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTCCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV543969       --> TGCTTCCAAACTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX776144       --> TGCTTCCAAATTTTTGTCTATAAAACTCTTTCTTGTTCACACCTTCTTTG  Raphanus raphanistrum subsp. landra

               651    -    701
UN17636        --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGCTGT
EV569438       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
EX765834       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
FD550765       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
FD580382       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
FD541105       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
FD966011       <-- GGTGCAGATGCATCGAGGAAAAAAAGGATGCCATCGAATCTCAAAGTTGT
EX772112       <-- GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
EX765878       <-- GGTGCAGATGCATCGAGGAAAAAG-GGATGCCATCGAATCTCAAAGTTGT
FD944944       --> ..................................................
EX769554       --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
EV573984       --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
EX769590       --> GGTGCAGATGCATCGAGGAAAAAG-GGATGCCATCGAATCTCAAAGTTGT
FD546675       --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT
EV543969       --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGCTGT
EX776144       --> GGTGCAGATGCATCGAGGAAAAAA-GGATGCCATCGAATCTCAAAGTTGT

               701    -    751
UN17636        --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EV569438       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EX765834       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD550765       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD580382       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD541105       <-- ATTGACCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD966011       <-- ATTGATCTTTAGATACATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EX772112       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EX765878       <-- ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD944944       --> ..................................................
EX769554       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EV573984       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EX769590       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
FD546675       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EV543969       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA
EX776144       --> ATTGATCTTTAGATGCATCAATGGCTTTGTCAAGATTCTTCTTCCCCACA

               751    -    801
UN17636        --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EV569438       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EX765834       <-- AAGCACCATGGGCACACCGTAACCGAGCTTATATCAATTTCGATGAGCTT
FD550765       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
FD580382       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
FD541105       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
FD966011       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EX772112       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EX765878       <-- AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
FD944944       --> ..................................................
EX769554       --> AAGCACCATGGGCACACCGTAACCGAGCTTATATCAATTTCGATGAGCT.
EV573984       --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EX769590       --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGA....
FD546675       --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EV543969       --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT
EX776144       --> AAGCACCATGGGCACACCGTATCCGAGCTTATATCAATTTCGATGAGCTT

               801    -    851
UN17636        --> TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGGAGGTTTTTTTTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGGAGGTTCTTTTTTT
EV569438       <-- TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGTAGGTTTT----TT
EX765834       <-- TTTT-GAAAAGTTTCTGCTCGCAGACTCGGCCATTGGAGGTTTTTTTTTT
FD550765       <-- TTTT-GAAAAGTTTCTGCTCGCAGACTCGGCCATTGGAGGTTTTTTTTTT
FD580382       <-- TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGGAGGTTCTTTTTTT
FD541105       <-- TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGGAGGTTTTTTTTTT
FD966011       <-- TTTTTGAAAAGTTTCTGCTTGCAGACTCGGCCATTGGAGGTTCTTTTTTT
EX772112       <-- TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCATTGTAGGTTTT----TT
EX765878       <-- TTTTTGAAAAGTTTCTGCTCGCAGACTCGGCCATTGGAGGTTTTTTTTTT
FD944944       --> ..................................................
EX769554       --> ..................................................
EV573984       --> TTT...............................................
EX769590       --> ..................................................
FD546675       --> TTT--GAAAAGTT.....................................
EV543969       --> TTTT-GAAAAGTTTCTGCTTGCAGACTCGGCCAT................
EX776144       --> TTTT-G............................................

               851    -    901
UN17636        --> T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATcc.
EV569438       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATccc
EX765834       <-- T--TTTTGGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
FD550765       <-- TTTTTTTGGCTGCAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
FD580382       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
FD541105       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
FD966011       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
EX772112       <-- T------GGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
EX765878       <-- T--TTTTGGCTGGAAACGATTGGAGGAAGATGATTGTGATCGTCTATGGG
FD944944       --> ..................................................
EX769554       --> ..................................................
EV573984       --> ..................................................
EX769590       --> ..................................................
FD546675       --> ..................................................
EV543969       --> ..................................................
EX776144       --> ..................................................

               901    -    951
UN17636        --> AGAAACAACTCACAAGATCATATTATCAAGATCATATAATATACAATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- ..................................................
EV569438       <-- ..................................................
EX765834       <-- cc................................................
FD550765       <-- AGAAACAACTCcc.....................................
FD580382       <-- AGAAACcc..........................................
FD541105       <-- AGAAACAACTCACAAGATCATATTATCAAGATCATATAATATACAATACA
FD966011       <-- AGAAACAACTCcc.....................................
EX772112       <-- AGAAACAACTCACAAGATCATATTATCAAGATCATATAATATACAATACA
EX765878       <-- AAAAA.............................................
FD944944       --> ..................................................
EX769554       --> ..................................................
EV573984       --> ..................................................
EX769590       --> ..................................................
FD546675       --> ..................................................
EV543969       --> ..................................................
EX776144       --> ..................................................

               951    -   1001
UN17636        --> CCTTCAAAGATAATGACTTTTCACCAACCATGCTGAGTTTCCCTCATTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV548263       <-- ..................................................
EV569438       <-- ..................................................
EX765834       <-- ..................................................
FD550765       <-- ..................................................
FD580382       <-- ..................................................
FD541105       <-- CCTTCAAAGA........................................
FD966011       <-- ..................................................
EX772112       <-- CCTTCAAAGATAATGACTTTTCACCAACCATGCTGAGTTTCCCTCATTTC
EX765878       <-- ..................................................
FD944944       --> ..................................................
EX769554       --> ..................................................
EV573984       --> ..................................................
EX769590       --> ..................................................
FD546675       --> ..................................................
EV543969       --> ..................................................
EX776144       --> ..................................................

               1001   -   1051
UN17636        --> TTTTTTTCTTTCC
                   ~~~~~~~~~~~~~
EV548263       <-- .............
EV569438       <-- .............
EX765834       <-- .............
FD550765       <-- .............
FD580382       <-- .............
FD541105       <-- .............
FD966011       <-- .............
EX772112       <-- TTTTTTTCTTTCC
EX765878       <-- .............
FD944944       --> .............
EX769554       --> .............
EV573984       --> .............
EX769590       --> .............
FD546675       --> .............
EV543969       --> .............
EX776144       --> .............