RadishBase

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Alignment for radish unigene UN17639

               1      -     51
UN17639        --> GGGCAGCACTTCAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> GGGCAGCACTTCAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
EY913742       --> ..ggAGCACTTCAACCGAAAAGCTAATAAACAAAAAA-AAAACATATTTT
EY940794       --> ..ggAGCACTTCAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
FD557775       --> ...ggGCACTTCAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
EX764180       --> ..aggggACTTCAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
EV569493       --> ..........ggAACTGAAAAGCTAATAAACAAAAAACAAAACATATTTT
FD560597       --> ..........ggAACCGAAAAGCTAATAAACAAAAAA--AAACATATTTT
FY428908       --> .......................................AAACATATTTT
EY921890       --> ..................................................
EY912931       --> ..................................................

               51     -    101
UN17639        --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
EY913742       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
EY940794       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
FD557775       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
EX764180       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAGTCACAT
EV569493       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
FD560597       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
FY428908       --> GTGGCCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
EY921890       --> ....gCTATAAAGTTGTTTAAATTCCACTCTAAACCCTAACGAATCACAT
EY912931       --> ..................................................

               101    -    151
UN17639        --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
EY913742       --> CTAGCTAGAGATTCAATGGATAGCCAAGAAGTTGTCAAGAGAAGACTAGC
EY940794       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
FD557775       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
EX764180       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
EV569493       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
FD560597       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
FY428908       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
EY921890       --> CTAGCTAGAGATTCAATGGATAACCAAGAAGTTGTCAAGAGAAGACTAGC
EY912931       --> ..................................................

               151    -    201
UN17639        --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
EY913742       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
EY940794       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
FD557775       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
EX764180       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
EV569493       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
FD560597       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
FY428908       --> CGTTCTCGTTGGCTGCAACTACCCTAACACAAAGAACGAGCTACACGGCT
EY921890       --> CGTTCTCGTCGGCTGCAACTACCCTAACACAAAGAACGAGCTTCACGGCT
EY912931       --> ........................gAACACAAAGAACGAGCTTCACGGCT

               201    -    251
UN17639        --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
EY913742       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
EY940794       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
FD557775       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
EX764180       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
EV569493       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
FD560597       --> GCGTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
FY428908       --> GCGTCAACGATGTTTTAGCCATGCAAGAAACTCTTTTAACCCGTTTCGGA
EY921890       --> GCTTCAACGATGTTTTAGCCATGAAAGAAACTCTTTTAACCCGTTTCGGA
EY912931       --> GCGTCAACGATGTTTTAGCCATGCAAGAAGCTCTTTTAACCCGTTTCGGA

               251    -    301
UN17639        --> TTCAAACAAGAAGACATGGAGGTTCTAACGGACGAGCCTGACTCAAAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY910422       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- ..................................................  Raphanus sativus var. oleiformis
FD538969       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD553808       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909254       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> TTCAAACAAGAAGACATGGAGGTTCTAACGGACGAGCCAAACTCAAAGCT  Raphanus sativus cv Early Scarlet Globe
EY913742       --> TTCAAACAAGAAAACATGGAGGTTCTAACGGACGAGCCTGAGTCAAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> TTCAAACAAGAAGACATGGAGGTTCTAACGGACGAGCCAAACTCAAAGCT  Raphanus sativus cv Early Scarlet Globe
FD557775       --> TTCAAGCAAAACGACATGGAGGTACTAACGGACGAGCCTGACTCAAAGCT  Raphanus raphanistrum subsp. landra
EX764180       --> TTCAAACAAAATGACATGGAGGTACTAACGGACGAGCCTGACTCAAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> TTCAAACAAAACGACATGGAGGTACTAACGGACGAGCCTGACTCAAAGCT  Raphanus raphanistrum subsp. landra
FD560597       --> TTCAAACAAGAAAACATGGAGGTTCTAACGGACGAGCCTGAGTCAAAGCT  Raphanus sativus var. oleiformis
FY428908       --> TTCAAACAAGAAGACATGGAGGTGCTAACGGACGAGCCTGAGTCAAAGCT  Raphanus sativus cv GSK3-1
EY921890       --> TTCAAACAAAACGACATGGAGGTACTAACGGACGAGCCTGACTCAAAGCT  Raphanus raphanistrum subsp. landra
EY912931       --> TTCAAACAAGAAGACATGGAGGTGCTAACGGACGAGCCAGACTCAAAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)

               301    -    351
UN17639        --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ..................................................
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EY913742       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EY940794       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGGGGATA
FD557775       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EX764180       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EV569493       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
FD560597       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTATGTAGGATGGTGGATA
FY428908       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EY921890       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA
EY912931       --> AAAGCCTACTGGAGCCAACATCAAGGCTGCTTTACGTAGGATGGTGGATA

               351    -    401
UN17639        --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ............GATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> AAGCTCAAACCGGATCCGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EY913742       --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EY940794       --> AAGCTCAAACCGGATCCGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
FD557775       --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EX764180       --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EV569493       --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
FD560597       --> AAGCTCAAACCGGACCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
FY428908       --> AAGCTCAAACCGGATCTGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT
EY921890       --> AAGCTCAAACCGGATCTGAAAACGTCCTGTTCTTCCACTATAGTGGCCAT
EY912931       --> AAGCTCAAACCGGATCCGAAAACGTCTTGTTCTTCCACTATAGTGGCCAT

               401    -    451
UN17639        --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- GGAACTCGGATTC-TTCGGTTAAAC-TGCTCGTCCTTTTAAACAAGACGA
EY910422       <-- ..................................................
EX891782       <-- ..................................................
FD538969       <-- ..................................................
EX900613       <-- ..................................................
EY917955       <-- ..................................................
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EY913742       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EY940794       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
FD557775       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EX764180       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EV569493       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
FD560597       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
FY428908       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EY921890       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA
EY912931       --> GGAACTCGGATTCCTTCGGTTAAACCTGCTCGTCCTTTTAAACAAGACGA

               451    -    501
UN17639        --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. landra
EY910422       <-- .........................CTCATCACAGATGTTGATTT-AGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- ..............................CACAGATGTTGATTTCAGAG  Raphanus sativus var. oleiformis
FD538969       <-- ..............................CACAGATGTTGATTTCAGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- .............................................TAGAG  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- ................................................AG  Raphanus raphanistrum subsp. landra
FD553808       <-- ..................................................  Raphanus raphanistrum subsp. landra
EY909254       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus sativus cv Early Scarlet Globe
EY913742       --> AGCTATAGTCCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus sativus cv Early Scarlet Globe
FD557775       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. landra
EX764180       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. landra
FD560597       --> AGCTATAGTCCCTTGTGATTTCAATCTCATCACAGATGTTGATTTCAGAG  Raphanus sativus var. oleiformis
FY428908       --> AGCTATAG-CCCTTGTGATT--AATCTCATCACAGATG............  Raphanus sativus cv GSK3-1
EY921890       --> AGCTATAGTTCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. landra
EY912931       --> AGCTATTGTCCCTTGTGATTTCAATCTCATCACAGATGTTGATTTTAGAG  Raphanus raphanistrum subsp. raphanistrum (NY)

               501    -    551
UN17639        --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EY910422       <-- AACTTGTTAATCAACTTCCCAAGGG-ACGAGCTTTACCATGATCTCAGAT
EX891782       <-- AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
FD538969       <-- AACTTGTTAATCAACTTCCCAAGGGAACGAGCTTTACCATGATCTCAGAT
EX900613       <-- AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EY917955       <-- AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
FD553808       <-- ..................................................
EY909254       <-- ..................................................
EY936502       <-- ..................................................
EY909925       <-- ..................................................
EX896731       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EY913742       --> AACTTGTTAAT--ACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EY940794       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCACGATCTCAGAT
FD557775       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EX764180       --> AACTTGTTAATCAACTTCCCA.............................
EV569493       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
FD560597       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
FY428908       --> ..................................................
EY921890       --> AACTTGTTAATCAACTTCCCAAGGGGACGAGCTTTACCATGATCTCAGAT
EY912931       --> AACTTGTTAATCAACTTCCCAAGGGAACGAGCTTTACCATGATCTCAGAT

               551    -    601
UN17639        --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATCGGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAATAGATCGGACC  Raphanus raphanistrum subsp. landra
EY910422       <-- TCTTGCCACAGTGGTGGTCTCATTGATAAGGAGAAAGAACAAATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATTGGTCC  Raphanus sativus var. oleiformis
FD538969       <-- TCTTGCCACAGTGGTGGTCTCATTGATAAGGAGAAAGAACAAATCGGACC  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAATAAATCGGACC  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATCGGACC  Raphanus raphanistrum subsp. landra
FD553808       <-- ...........................AAGGAGAAAGAACAAATCGGACC  Raphanus raphanistrum subsp. landra
EY909254       <-- .......................................CAAATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAATAAATCGGACC  Raphanus sativus cv Early Scarlet Globe
EY913742       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> TCTTGCCACAGTGGTGGCCTCATCGACAAGGAGAAAGAACAAATCGGACC  Raphanus sativus cv Early Scarlet Globe
FD557775       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATCGGACC  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAATAGATCGGACC  Raphanus raphanistrum subsp. landra
FD560597       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATTGGTCC  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> TCTTGCCACAGTGGTGGCCTCATTGACAAGGAGAAAGAACAAATCGGACC  Raphanus raphanistrum subsp. landra
EY912931       --> TCTTGCCACAGTGGTGGTCTCATTGATAAGGAGAAAGAACAAATTGGTCC  Raphanus raphanistrum subsp. raphanistrum (NY)

               601    -    651
UN17639        --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EY910422       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EX891782       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGTCGACAATAACAT
FD538969       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EX900613       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EY917955       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAACAACAT
FD553808       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EY909254       <-- CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EY936502       <-- .TTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EY909925       <-- ..................................................
EX896731       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACA-TAACAT
EY913742       --> CTTCTCTGGAGTTAGATC................................
EY940794       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
FD557775       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
EX764180       --> ..................................................
EV569493       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT
FD560597       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGTCGACAATAACAT
FY428908       --> ..................................................
EY921890       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAACAACAT
EY912931       --> CTTCTCTGGAGTTAGATCTCCGGCCATGGAGACAACGACGACAATAACAT

               651    -    701
UN17639        --> CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EY910422       <-- CACGTGCCTTACCCTACAAGGAGGTTCTCGACCACTTGAGTTCTCGCACC
EX891782       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
FD538969       <-- CACGTGCCTTACCCTACAAGGAGGTTCTCGACCACTTGAGTTCTCGCACC
EX900613       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EY917955       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
FD553808       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EY909254       <-- CACGTGCCTTACCCTACAAGGAGGTTCTCGACCACTTGAGTTCTCGCACC
EY936502       <-- CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EY909925       <-- .................AAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EX896731       --> CACGTGCCT.........................................
EY913742       --> ..................................................
EY940794       --> CACGTGCCTTACCCTACAAGGA-GTTCTCGACCACTTGAGTTCTCGTACC
FD557775       --> CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
EX764180       --> ..................................................
EV569493       --> CACGTGCCTTACCCTACAAGGAAGTTCTCGACCACTTGAGTTCTCGTACC
FD560597       --> CACGTGCCTTACCCTACAAG-AAGTTCTCGACCACTTGAGTTCTCGTACC
FY428908       --> ..................................................
EY921890       --> CACGTGCCTTACCCTACAAG-AAGTTCTCGACCACTTGAGTTCTCGTACC
EY912931       --> CACGTGCCTTACCCTACAAGGAGGTTCTCGACCACTTGAGTTCTCGCACC

               701    -    751
UN17639        --> GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTG-
EY910422       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTGGAGCTCTTTGGTGG
EX891782       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
FD538969       <-- GGAATCTCAACTTCAGACATCGGTACACACCTACTGGAGCTCTTTGGTAG
EX900613       <-- GGAATCTCAACTTCAGACATTGGTACGCACCTACTCGAGCTCTTTGGTGG
EY917955       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
FD553808       <-- GGAATCTCAACTTCAGACATTGGTACA-ACCTACTCGAGCTCTTTGGTGG
EY909254       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTGGAGCTCTTTGGTGG
EY936502       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
EY909925       <-- GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> GGAATCTCA-CTTCAGACAT-GGTACACACCTACTCGAGCTCTTTGGTGG
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTG-
FD560597       --> GGAATCTCA-CTTCAGACATTGGTACACACCTACTCGAGCTCTT......
FY428908       --> ..................................................
EY921890       --> GGAATCTCAACTTCAGACATTGGTACACACCTACTCGAGCTCTTTGGTGG
EY912931       --> GGAATCTCAACTTCAGACATTGGTACACACCTACTGGAGCTCTTTGGTGG

               751    -    801
UN17639        --> CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EY910422       <-- CGACGCCGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EX891782       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
FD538969       <-- CGACGTCGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGAACTT
EX900613       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EY917955       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
FD553808       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EY909254       <-- CGACGCCGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EY936502       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EY909925       <-- CGACGCTGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> CGACGCTGGTCTAA-G-TCC--GCTACCGGCTATGGATT-GATGGATCTT
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> CGACGCTGGTCTAAAGTTCCCGGCTACCGGCTATGGATTTGATGGATCTT
FD560597       --> ..................................................
FY428908       --> ..................................................
EY921890       --> CGACGCTGGTCTAAAGTTCC-G-CTA-CGGCTATGGATTTGATGGATCTT
EY912931       --> CGACGCCGGTCTAAAGTTCC-GGCTACCGGCTATGGATTTGATGGATCTT

               801    -    851
UN17639        --> TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EY910422       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EX891782       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
FD538969       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EX900613       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EY917955       <-- TTGGAGAGCATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
FD553808       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EY909254       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EY936502       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EY909925       <-- TTGGAGAACATGAAGGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> T-GGAGA-CATGAAG-CGCGTGAAg.........................
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> TTGGAGAACATGAAG-CGCGTGAAAGACACGTTGACTCAGG-ATACTGTT
FD560597       --> ..................................................
FY428908       --> ..................................................
EY921890       --> Tgagagcatgagcgcg..................................
EY912931       --> TTGGAGAACATGAAAGCGCGTGAAAGACACGTTGACTCAGGGATACTGTT

               851    -    901
UN17639        --> GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCTGTG  Raphanus raphanistrum subsp. landra
EY910422       <-- GAGCGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- GAGTGGGTGTCTGGCCGATGAAACGTCTGCTGGCGTTGTAAGTGGCGGTG  Raphanus sativus var. oleiformis
FD538969       <-- GAGCGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- GAGTGGGTGTCAGGCCGACGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCTGTG  Raphanus raphanistrum subsp. landra
FD553808       <-- GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCTGTG  Raphanus raphanistrum subsp. landra
EY909254       <-- GAGCTGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- GAGTGGGTGTCAGGCCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY913742       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557775       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> GAGTGGGTGTCAG-CCGATGAA-CGTCTGCTGACGT-GT-AGTGGCTGTG  Raphanus raphanistrum subsp. landra
FD560597       --> ..................................................  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> ..................................................  Raphanus raphanistrum subsp. landra
EY912931       --> GAGCTGGTGTCAG-CCGATGAAACGTCTGCTGACGTTGTAAGTGGCGGTG  Raphanus raphanistrum subsp. raphanistrum (NY)

               901    -    951
UN17639        --> GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTTTTGAAGGAA  Raphanus raphanistrum subsp. landra
EY910422       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus sativus var. oleiformis
FD538969       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTTCTGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTTTTGAAGGAA  Raphanus raphanistrum subsp. landra
FD553808       <-- GGAAGGCGTATGGAGCGTTTAACAACGCGATTCAGACGGTTTTGAAGGAA  Raphanus raphanistrum subsp. landra
EY909254       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- GGAAGGCGTATGGAGCGTTTAGCAACGCGATTCAGACGGTGCTGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY913742       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557775       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> GGAgc.............................................  Raphanus raphanistrum subsp. landra
FD560597       --> ..................................................  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> ..................................................  Raphanus raphanistrum subsp. landra
EY912931       --> GGAAGGCGTATGGAGCGTT-AGCAACGCGATTCAGACG............  Raphanus raphanistrum subsp. raphanistrum (NY)

               951    -   1001
UN17639        --> AACGGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- ATCGGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. landra
EY910422       <-- AACGGAGGTGCCTTGAAGAACGAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- AACAGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus sativus var. oleiformis
FD538969       <-- AACGGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- AACAGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- AACGGAGGTGCCTTGAAGAACAAGGAACTGGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. landra
FD553808       <-- ATCGGAGGTGCCTTGAAGGACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. landra
EY909254       <-- AACGGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- AACAGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- AACAGAGGTGCCTTGAAGAACAAGGAACTAGTGATAATGGCAAGAGAAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY913742       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557775       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> ..................................................  Raphanus raphanistrum subsp. landra
FD560597       --> ..................................................  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> ..................................................  Raphanus raphanistrum subsp. landra
EY912931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1001   -   1051
UN17639        --> GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EY910422       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EX891782       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
FD538969       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EX900613       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTCTACTGCAGCGACC
EY917955       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTAGTCTTTACTGCAGCGACC
FD553808       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EY909254       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EY936502       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EY909925       <-- GCTTGAGAGACTAGGGTTTCAGCAACACCCTTGTCTTTACTGCAGCGACC
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> ..................................................
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> ..................................................
FD560597       --> ..................................................
FY428908       --> ..................................................
EY921890       --> ..................................................
EY912931       --> ..................................................

               1051   -   1101
UN17639        --> AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTA-
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATACTTA-  Raphanus raphanistrum subsp. landra
EY910422       <-- AGAACGCGGACGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- AGAACGCGGACGCAACGTTTCTGTCTCAACCTTGATTCGATTATATTTA-  Raphanus sativus var. oleiformis
FD538969       <-- AGAACGCGGACGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTA-  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTAT  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTA-  Raphanus raphanistrum subsp. landra
FD553808       <-- AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATACTTA-  Raphanus raphanistrum subsp. landra
EY909254       <-- AGAACGCGGACGCAATGTTCCTGTCTCAACCTTGATGCGATTATATTTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- AGAACGCGGGCGCAACGTTCCTGTCTCAACCTTGATGCGATTATATTTAT  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- AGAACGCGGACGCAACGTTTCTGTCTCAACCTTGATTCGATTATATTTA-  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY913742       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557775       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> ..................................................  Raphanus raphanistrum subsp. landra
FD560597       --> ..................................................  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> ..................................................  Raphanus raphanistrum subsp. landra
EY912931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1101   -   1151
UN17639        --> --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EY910422       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EX891782       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
FD538969       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTAT--------TTGTGT
EX900613       <-- TAATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EY917955       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
FD553808       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EY909254       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EY936502       <-- TAATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EY909925       <-- --ATGAATAAAAGCGTTGTCGTTGTGTTTCTTTTATTTGTGTTGTCGTGT
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> ..................................................
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> ..................................................
FD560597       --> ..................................................
FY428908       --> ..................................................
EY921890       --> ..................................................
EY912931       --> ..................................................

               1151   -   1201
UN17639        --> -TT-GATGTGTATTTTCACTCTTTCA-TGGTGTGTGTGTTCCATAATTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- -TT-GATGTGTATTTTCACTCTTTCG-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. landra
EY910422       <-- -TT-GATGTGTACTTTCACTCTTTCA-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891782       <-- -TT-GATGTGTATTTTCACTCTTTCAAAGGTGTGTGTGTTCCATAATTAA  Raphanus sativus var. oleiformis
FD538969       <-- -TT-GATGTGTATTTTCACTCTTTCA-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX900613       <-- -TTTGATGTGTATTTTCACTCTTTCG-TGGTGTGTGTGTTCCATAATTAA  Raphanus sativus cv Early Scarlet Globe
EY917955       <-- GTT-GATGTGTATTTTCACTCTTTCA-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. landra
FD553808       <-- -TT-GATGTGTATTTTCACTCTTTCG-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. landra
EY909254       <-- -TT-GATGTGTATTTTCACTCTTTCA-TGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY936502       <-- -TTTGATGTGTATTTTCACTCTTTCG-TGGTGTGTGTGTTCCATAATTAA  Raphanus sativus cv Early Scarlet Globe
EY909925       <-- -TT-GATGTGTATTTTCACTCTTTCAAAGGTGTGTGTGTTCCATAATTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX896731       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY913742       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY940794       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD557775       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764180       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV569493       --> ..................................................  Raphanus raphanistrum subsp. landra
FD560597       --> ..................................................  Raphanus sativus var. oleiformis
FY428908       --> ..................................................  Raphanus sativus cv GSK3-1
EY921890       --> ..................................................  Raphanus raphanistrum subsp. landra
EY912931       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               1201   -   1251
UN17639        --> AAGGAAGAATAAATTGCTACGAATTTAAAACATAATATTTTCTAAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- AAGGAAGAATAAATTGCTACGGATTTAAAACAg.................
EY910422       <-- AAGGAAGAATAAATTGCTACGAATTTAAAACATAATATTTTCTAAAGACA
EX891782       <-- AAGGAAGAATAAATTGCTACGAATTT........................
FD538969       <-- AAGGAAGAATAAATTGCTAC..............................
EX900613       <-- AAG-AAGAATAAATTGCTACGAATTTAAAACATg................
EY917955       <-- AAGGAAGAATAAATTGCTACGAATTT........................
FD553808       <-- AAGGAAGAATAAATTGCTACGAATTT........................
EY909254       <-- AAGGAAGAATAAATTGCTAC..............................
EY936502       <-- AAGGAAGAATAAATTGCTACGAATTT........................
EY909925       <-- AAGGAAGAATAAATTGCTACGAATTTAAAACAgc................
EX896731       --> ..................................................
EY913742       --> ..................................................
EY940794       --> ..................................................
FD557775       --> ..................................................
EX764180       --> ..................................................
EV569493       --> ..................................................
FD560597       --> ..................................................
FY428908       --> ..................................................
EY921890       --> ..................................................
EY912931       --> ..................................................

               1251   -   1301
UN17639        --> TAAAACTAGATCTTAAAGGTG
                   ~~~~~~~~~~~~~~~~~~~~~
EV574022       <-- .....................
EY910422       <-- TAAAACTAGATCTTAAAGGTG
EX891782       <-- .....................
FD538969       <-- .....................
EX900613       <-- .....................
EY917955       <-- .....................
FD553808       <-- .....................
EY909254       <-- .....................
EY936502       <-- .....................
EY909925       <-- .....................
EX896731       --> .....................
EY913742       --> .....................
EY940794       --> .....................
FD557775       --> .....................
EX764180       --> .....................
EV569493       --> .....................
FD560597       --> .....................
FY428908       --> .....................
EY921890       --> .....................
EY912931       --> .....................