Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17647

               1      -     51
UN17647        --> GGAAACCAGTTGCGTGTTTGGTTATCTTTTCTTTCGTGGTAACCTAAATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- ..................................................
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> GGAAACCAGTTGCGTGTTTGGTTATCTTTTCTTTCGTG-TAACCTAAATT
FD971810       --> ...................................GTGGTAACCTAAATT
FD940505       --> ..................................................
EY921241       --> ..................................................

               51     -    101
UN17647        --> AAGGGATTTGTTCTAACAAATCTCTCTAGACTCCAAAAAGGAAGAATCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- .................AAATCTCTCTAGACTCCAAAA-GGAAGAATCTC
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> AAGGGATTTGTTCTAACAAATCTCTCTAGACTCCAAAAAGGAAGAATCTC
FD971810       --> AAGGGATTTGTTCTAACAAATCTCTCTAGACTCCAAAAAGGAAGAATCTC
FD940505       --> ..................................................
EY921241       --> ..................................................

               101    -    151
UN17647        --> ACGTCTCTCATCTTCTTCTCGGGAAGATCAGAAAACAACTTCTTTTTGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- ACGTCTCTCATCTTCTTCTCGGGAAGATCAGAAAACAACTTCTTTT-GTT
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> ACGTCTCTCATCTTCTTCTCGGGAAGATCAGAAAACAACTTCTTTTTGTT
FD971810       --> ACGTCTCTCATCTTCTTCTCGGGAAGATCAGAAAACAACTTCTTTTTGTT
FD940505       --> ..................................................
EY921241       --> ..................................................

               151    -    201
UN17647        --> TAAATTTCATCTTCAAGCTTCGAAGATCGCAGGAAAAATTTTCGTTTCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TAAATTTCATCTTCAAGCTTCGAAGATCGCAGGAAAAATTTTCGTTTCGA
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> TAAATTTCATCTTCAAGCTTCGAAGATCGCAGGAAAAATTTTCGTTTCGA
FD971810       --> TAAATTTCATCTTCAAGCTTCGAAGATCGCAGGAAAAATTTTCGTTTCGA
FD940505       --> ..................................................
EY921241       --> ..................................................

               201    -    251
UN17647        --> TCTGACCATTTCTGGTGAGAAGGCAGGATTTTAAAAGACGACAACAACAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TCTGACCATTTCTGGTGAGAAGGCAGGATTTTAAAAGACGACAACAACAA
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> TCTGACCATTTCTGGTGAGAAGGCAGGATTTTAAAAGACGACAACAACAA
FD971810       --> TCTGACCATTTCTGGTGAGAAGGCAGGATTTTAAAAGACGACAACAACAA
FD940505       --> ..................................................
EY921241       --> ..................................................

               251    -    301
UN17647        --> CAACAATGAGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACAGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CAACAATGAGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACAGAG
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> CAACAATGAGCTCTGAGCAAAACAACAACACAAGCTTCCCACCAACAGAG
FD971810       --> CAACAATGAGCTCTGAGCAAAACAACAGCACAAGCTTCCCACCAACAGAG
FD940505       --> ..................................................
EY921241       --> ..................................................

               301    -    351
UN17647        --> CCAAAGCTCTGCGATAACGGATGCGGATTCTTCGGGTCACCCTCCAACAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CCAAAGCTCTGCGATAACGGATGCGGATTCTTCGGGTCACCCTCCAACAT
EX906986       <-- ..................................................
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> CCAAAGCTCTGCGATAACGGATGCGGATTCTTCGGGTCACCCTCCAACAT
FD971810       --> CCAAAGCTCTGCGATAACGGATGCGGATTCTTCGGGTCACCCTCCAACAT
FD940505       --> .........gGCGATAACGGATGCGGATTCTTCGGGTCACCTTCCAACAT
EY921241       --> ..................................................

               351    -    401
UN17647        --> GAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- GAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAA
EX906986       <-- ................................GTGCCGAGGAAGATCAAA
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> GAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAA
FD971810       --> GAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAA
FD940505       --> GAACCTTTGTTCCAAATGTTACCGAAGCCTACGTGCCGAGGAAGATCAAA
EY921241       --> ..................................................

               401    -    451
UN17647        --> CGGCAGTGGCCAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCCTCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CGGCAGTGGCCAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCCTCTTGC
EX906986       <-- CGGCAGTGGCGAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCATCTTGC
FD581933       <-- ..................................................
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> CGGCAGTGGCCAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCCTCTTGC
FD971810       --> CGGCAGTGGCCAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCCTCTTGC
FD940505       --> CGGCAGTGGCAAAAGCTGCGGTGGAGAAATCACTAAAGCTTCCATCTTGC
EY921241       --> ..................................................

               451    -    501
UN17647        --> AGTCTCATCACCGCGCCAGAGCCGAAACAGCCTCTGGAGACGGAACCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- AGTCTCATCACCGCGCCAGAGCCGAAACAGCCTCTGGAGACGGAACCAGT
EX906986       <-- AGTCTC---ATGGCACCAGAGCCAAAACAGCCTCTGGAGACCGAACCAGT
FD581933       <-- ..cagtctcatggcaCCAGAGCCAAAACAGCCTCTGGAGACCGAACCAGT
FD581576       <-- ..................................................
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> AGTCTCATCACCGCGCCAGAGCCGAAACAGCCTCTGGAGACGGAACCAGT
FD971810       --> AGTCTCATCACCGCGCCAGAGCCGAAACAGCCTCTGGAGACGGAACCAGT
FD940505       --> AGTCTCATCACCGCACCAGAGCCAAAACAGCCTCTGGAGACCGAACCAGT
EY921241       --> ..................................................

               501    -    551
UN17647        --> CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
EX906986       <-- CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
FD581933       <-- CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
FD581576       <-- .......................................TCCTCCTGTAG
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
FD971810       --> CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTTCTGTTCCTCCTGTAG
FD940505       --> CTCGGTGGAAACCGTTGTGATCGCTGAACCGACTGCTGTTCCTCCTGTAG
EY921241       --> ..................................................

               551    -    601
UN17647        --> CTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
EX906986       <-- CTACGGGACAGGAGGAGGAAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
FD581933       <-- CTACGGGACAGGAGGAGGAAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
FD581576       <-- CTACGGGACAGGAG---GAAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
FD968878       <-- .............................AAGCCTGCACGGCCTAACAGG
EY917431       <-- ..................................................
FD973132       --> CTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
FD971810       --> CTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
FD940505       --> CTACGGGACAGGAGGAGGGAGAGCCGTCGAAGCCTGCACGGCCTAACAGG
EY921241       --> ..................................................

               601    -    651
UN17647        --> TGTTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGG-TTTAAGTGCAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TGTTTCAGCTGTAACAAGAAAGTTGGAGTCATGGGG-TTTAAGTGCAAAT
EX906986       <-- TATTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGG-TTTAAGTGCAAAT
FD581933       <-- TGTTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGG-TTTAAGTGCAAAT
FD581576       <-- TGTTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGG-TTTAAGTGCAAAT
FD968878       <-- TGTTTCAGCTGTAACAAGAAAGTTGGAGTCATGGGG-TTTAAGTGCAAAT
EY917431       <-- ..................................................
FD973132       --> TGTTTCAGCTGTAACAAGAAAGTTGGAGTCATGGGGGTTTAAGTGCAAAT
FD971810       --> TGTTTCAGCTGTAACAAGAAAGTTGGAGTCATGGGG-TTTAAGTGCAAAT
FD940505       --> TGTTTCAGCTGTAACAAGAAGGTTGGAGTTATGGGG-TTTAAGTGCAAAT
EY921241       --> ..................................................

               651    -    701
UN17647        --> GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
EX906986       <-- GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
FD581933       <-- GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
FD581576       <-- GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
FD968878       <-- GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCATGAGTG
EY917431       <-- ggGGG-AGCACGTTTTGCGGGAGACATAGGTACCCGGAGAAGCACGAGTG
FD973132       --> GCGGGGAGCACGTTTTGCGGGAGCCA........................
FD971810       --> GCGGG-AGCACGTTTTGCGGGAGCCATAG-TACCCGGAGAAGCATGAGTG
FD940505       --> GCGGG-AGCACGTTTTGCGGGAGCCATAGGTACCCGGAGAAGCACGAGTG
EY921241       --> ggGGG-AGCACGTTTTGCGGGAGACATAGGTACCCGGAGAAGCACGAGTG

               701    -    751
UN17647        --> TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
EX906986       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
FD581933       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
FD581576       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
FD968878       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
EY917431       <-- TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
FD973132       --> ..................................................
FD971810       --> TAGCTTCGATTTCAAAGAG-TTGGACGCGGTGCAATCGC...........
FD940505       --> TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC
EY921241       --> TAGCTTCGATTTCAAAGAGGTTGGACGCGGTGCAATCGCAAAGGCGAATC

               751    -    801
UN17647        --> CTGTGGTCAAGGCGGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- CTGTGGTCAAGGCGGATAAAGTCCAGAGGATATGATTGTGATGTGATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX906986       <-- CTGTGGTCAAGGCGGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG  Raphanus sativus cv Rat-Tail Radish #3870
FD581933       <-- CTGTGGTCAAGGCGGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG  Raphanus sativus cv Rat-Tail Radish #3870
FD581576       <-- CTGTGGTCAAGGCGGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG  Raphanus sativus cv Rat-Tail Radish #3870
FD968878       <-- CTGTGGTCAAGGCGGATAAAGTCCAGAGGATACGATTGTGATGTGATGTG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY917431       <-- CTGTGGTCAAGGCCGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG  Raphanus raphanistrum subsp. landra
FD973132       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD971810       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD940505       --> CTGTGGTCAAGGCCGATAAAGTCCAGAGGATTTGATTGTGATGTTATGTG  Raphanus sativus var. oleiformis
EY921241       --> CTGTGGTCAAGGCCGATAAAGTCCAGAGGATTTGATTGTGATGTGATGTG  Raphanus raphanistrum subsp. landra

               801    -    851
UN17647        --> TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
EX906986       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
FD581933       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
FD581576       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
FD968878       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
EY917431       <-- TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
FD973132       --> ..................................................
FD971810       --> ..................................................
FD940505       --> TCTATCTTTCGGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG
EY921241       --> TCTATCTTTCAGTTTATTCCGAGAATGTTGCTGTGATGTGGTCATGTTCG

               851    -    901
UN17647        --> ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTGCTATTGGTTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAAT-GCTGCTATTGGTTTTC
EX906986       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTGCTATTGGTTTTC
FD581933       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTGCTATTGGTTTTC
FD581576       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTGCTATTGGTTTTC
FD968878       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAA..................
EY917431       <-- ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTac...........
FD973132       --> ..................................................
FD971810       --> ..................................................
FD940505       --> ATGTTGGGTTTCTATGAATCAAAATGAA......................
EY921241       --> ATGTTGGGTTTCTATGAATCAAAATGAAAAAATTGCTac...........

               901    -    951
UN17647        --> TCATGAATCCTTTTT-AGTGCTTTTAACTCTATTGAAATGGAGTCTCCCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD967834       <-- TCATGAATCCTTTTTTAGTGCTTTTAAGTCTATTGAAATGGAGTCTCCCT
EX906986       <-- TCATG.............................................
FD581933       <-- TCATGAATCCTTTTT-AGTGCTTTTAACTCTATTGAAATGGAGTCTCCC.
FD581576       <-- TCATGAATCCTTTTT-AGTGCTTTTAACTCTATTGAAATGGAGTCTCCCT
FD968878       <-- ..................................................
EY917431       <-- ..................................................
FD973132       --> ..................................................
FD971810       --> ..................................................
FD940505       --> ..................................................
EY921241       --> ..................................................

               951    -   1001
UN17647        --> TTGCCTGCTC
                   ~~~~~~~~~~
FD967834       <-- TTGCCTGCT.
EX906986       <-- ..........
FD581933       <-- ..........
FD581576       <-- TTGCCTGCTC
FD968878       <-- ..........
EY917431       <-- ..........
FD973132       --> ..........
FD971810       --> ..........
FD940505       --> ..........
EY921241       --> ..........