RadishBase

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Alignment for radish unigene UN17674

               -4     -     46
UN17674        --> .....GGGTGAACGTTGGAGATTTATATTTAGAAGTAATGAAATGGTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................
FD973701       <-- ..................................................
EW732351       <-- ..................................................
EY924423       <-- ..................................................
EV551424       <-- ..................................................
FD939447       <-- ..................................................
EY950074       <-- ..................................................
FD981041       <-- ..................................................
EV539483       <-- ..................................................
FD970985       <-- ..................................................
EY906959       <-- ..................................................
FD544313       <-- ..................................................
FD976833       --> .....GGGTGAACGTTGGAGATTTATATTTAGAAGTAATGAAATGGTAAA
FD967222       --> cgacagaGTGAACGTTGGAGATTTATATTTAGAAGTAATGAAATGGTAAA
FD969342       --> cgacagaGTGAACGTTGGAGATTTATATTTAGAAGTAATGAAATGGTAAA
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               46     -     96
UN17674        --> TGTAACAAACCCAATGGCAAAATCTGGTGTTCTTTATACTGATTAAAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973701       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV551424       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- ..................................................  Raphanus sativus var. oleiformis
EY950074       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> TGTAACAAACCCAATGGCAAAATCTGGTGTTCTTTATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TGTAACAAACCCAATGGCAAAATCTGGTGTCCTT-ATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> TGTAACAAACCCAATGGCAAAATCTGGTGTCCTT-ATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> ...............GGCAAAATCTGGTGTTCTTTATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> ...............GGCAAAATCTGGTGTCCTT-ATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> ...............GGCAAAATCTGGTGTTCTTTATACTGATTAAAAAA  Raphanus sativus var. oleiformis
FD958802       --> ..............cGGCAAAATCTGGTGTTCTTTATACTGATTAAAAAA  Raphanus raphanistrum subsp. maritimus
EX758597       --> ...................AAATCTGGTGTCCTT-ATACTGATTAAAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               96     -    146
UN17674        --> TAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................  Raphanus raphanistrum subsp. landra
FD973701       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV551424       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- ..................................................  Raphanus sativus var. oleiformis
EY950074       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> AAAAAAAACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> TAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> AAAAAAGACAAGACAAAAAGTTATTCCGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> TAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> --AAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus sativus var. oleiformis
FD958802       --> AAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. maritimus
EX758597       --> TAAAAAGACAAGACAAAAAGTTATTCTGGTGGGTTTACCAAACACGGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               146    -    196
UN17674        --> TATATGTGATAAATCAAACCGATCCTGCACAGGTTGTTGAACCATGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ....................GATCCTGCACA----GGTGAGCCATGAAAG  Raphanus raphanistrum subsp. landra
FD973701       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- ..................................................  Raphanus raphanistrum subsp. landra
EV551424       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- ..................................................  Raphanus sativus var. oleiformis
EY950074       <-- ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> TATATGTGATAAATCAAACCGATCCTGCACAGGTGGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TATATGTAATAAATCAAACCGATCCTGCACAGGTTGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> TATATGTAATAAATCAAACCGATCCTGCACAGGTTGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> TATATGTGATAAATCAAACCGATCCTGCACAGGTGGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> TATATGTAATAAATCAAACCGATCCTGCACAGGTTGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> TATATGTGATAAATCAAACCGATCCTGCACAGGTGGTTGAACCATGAAAG  Raphanus sativus var. oleiformis
FD958802       --> TATATGTGATAAATCAAACCGATCCTGCACAGGTGGTTGAACCATGAAAG  Raphanus raphanistrum subsp. maritimus
EX758597       --> TATATGTAATAAATCAAACCGATCCTGCACAGGTTGTTGAACCATGAAAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               196    -    246
UN17674        --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- AGTCT-CAGGCCACAGAT-GAACCGCTCTCTCGAAGT-ATC-TCGGCTGA
FD973701       <-- .............................................GCTGA
EW732351       <-- .................................................A
EY924423       <-- ..................................................
EV551424       <-- ..................................................
FD939447       <-- ..................................................
EY950074       <-- ..................................................
FD981041       <-- ..................................................
EV539483       <-- ..................................................
FD970985       <-- ..................................................
EY906959       <-- ..................................................
FD544313       <-- ..................................................
FD976833       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
FD967222       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
FD969342       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
EV546520       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
EY903009       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
FD935573       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
FD958802       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA
EX758597       --> AGTCTTCAGGCCACAGATTGAACCGCTCTCTCGAAGTTATCTTCGGCTGA

               246    -    296
UN17674        --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
FD973701       <-- TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
EW732351       <-- TGATACACGCT-CACGAGCACATGT-CTGGATGTGATAGTT-CAGCTGGC
EY924423       <-- ..ATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
EV551424       <-- ..............................................TGGC
FD939447       <-- ..................................................
EY950074       <-- ..................................................
FD981041       <-- ..................................................
EV539483       <-- ..................................................
FD970985       <-- ..................................................
EY906959       <-- ..................................................
FD544313       <-- ..................................................
FD976833       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
FD967222       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
FD969342       --> TGATACACCCTTCACGAGCACATGTTCTGGATGTGATAGTTTCACCTGGC
EV546520       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
EY903009       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
FD935573       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC
FD958802       --> TGATACACGCTTCACGAGCACATGTTCTGGATATGATAGTTTCAGCTGGC
EX758597       --> TGATACACGCTTCACGAGCACATGTTCTGGATGTGATAGTTTCAGCTGGC

               296    -    346
UN17674        --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
FD973701       <-- TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
EW732351       <-- TTAAGTAACGTGAAGATGATT-GCCAACATGAAGACTGCAGACGACAAGG
EY924423       <-- TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
EV551424       <-- TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
FD939447       <-- ...........GAAGATGATT-GCCAACATGAAGACTGCAGACGACAAG-
EY950074       <-- ................................AGACTGCAGACGACAAG-
FD981041       <-- ..................................................
EV539483       <-- ..................................................
FD970985       <-- ..................................................
EY906959       <-- ..................................................
FD544313       <-- ..................................................
FD976833       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGGCAAGG
FD967222       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAAACGACAAGG
FD969342       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAAACTGCAAACGACAAGG
EV546520       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
EY903009       --> TTAAGTAACGTGAAAATGATTTGCCAACATGAAGACTGCAGACGACAAGG
FD935573       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG
FD958802       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAAACTGCAAACGACAAGG
EX758597       --> TTAAGTAACGTGAAGATGATTTGCCAACATGAAGACTGCAGACGACAAGG

               346    -    396
UN17674        --> TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TTTGCAAGAGTTTCTGGGTCCTTAGCATCCCTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. landra
FD973701       <-- TTTGCAAGAGTTTCTGGGTCTT-AGCATCCTTATTGAGTGCTTCAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- TTTGCAAGAGTTTCTGGGTCTTTAGCATC-TTGTTGAGTGCTTCAAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- TTTGCAAGAGTTTCTGGGTCTT-AGCATC-TTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. landra
EV551424       <-- TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- TTTGCAAGAGTTTCTGGGTCTTTAGCATC-TTG-TGAGTGCTTCAAGGAG  Raphanus sativus var. oleiformis
EY950074       <-- TTTGCAAGAGTT-CT-GGTCTTTAGCAT--CTG-TGAGTGC-TCAAGGAG  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TTTGCAAGAGTTTCTGGGTCCTTAGCATCCTTATTGAGTGCTTCAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> TTTGCAAGAGTTTCTGGGTCCTTAGCATCCTTATTGAGTGCTTCAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> TTTGCAAGAGTTTCTGGGTCCTTAGCATCCTTATTGAGTGCTTCAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG  Raphanus sativus var. oleiformis
FD958802       --> TTTGCAAGAGTTTCTGGGTCTTTAGCATCCTTGTTGAGTGCTTCAAGGAG  Raphanus raphanistrum subsp. maritimus
EX758597       --> TTTGCAAGAGTTTCTGGGTCCTTAGCATCCTTATTGAGTGCTTCAAGAAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               396    -    446
UN17674        --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- CAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. landra
FD973701       <-- TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACAGCT  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- CAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. landra
EV551424       <-- CAGTGTTTTCAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus sativus var. oleiformis
EY950074       <-- TAGTGTTT-CAGCT-CATCAAAGTTACCCATTTGCATACAGCAAACAGCT  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ................ATCAAAGTTACCCATT-GCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ..................CAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> CAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus sativus var. oleiformis
FD958802       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. maritimus
EX758597       --> TAGTGTTT-CAGCTTCATCAAAGTTACCCATTTGCATACAGCAAACTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               446    -    496
UN17674        --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
FD973701       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG
EW732351       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
EY924423       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
EV551424       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
FD939447       <-- TTGCCATTCAAGATCAAGCATGAGATGGGATACTTCTCACAGAAATCCTG
EY950074       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
FD981041       <-- TTGCCAT-CAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
EV539483       <-- TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
FD970985       <-- ....CATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG
EY906959       <-- ..................................................
FD544313       <-- ..................................................
FD976833       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
FD967222       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG
FD969342       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG
EV546520       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
EY903009       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG
FD935573       --> TTGCCATTCAAGATCAAGCATGAGATGGGATACTTCTCACAGAAATCCTG
FD958802       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAGAAATCCTG
EX758597       --> TTGCCATTCAAGATCAAGCATGTCATGGGATACTTCTCACAAAAATCCTG

               496    -    546
UN17674        --> GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
FD973701       <-- GAAAATGAGATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
EW732351       <-- GAAAATGAGATAAGCTTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
EY924423       <-- GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
EV551424       <-- GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
FD939447       <-- GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
EY950074       <-- GAAAATGAGATAAGCTTCGTGAATCTTCGAGCCACCCACTGCCAGGTTAA
FD981041       <-- GAAAATGAGATAAGCTTC-TGTATCTTCGAGCCACCCACTGCCAGGTTAA
EV539483       <-- GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
FD970985       <-- GAAAATGAGATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
EY906959       <-- ......................ATCTTCGAGCCACCCACTGCCAGGTTAA
FD544313       <-- ..................................................
FD976833       --> GAAAA.............................................
FD967222       --> GAAAATGAGATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
FD969342       --> GAAAATGAAATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
EV546520       --> GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
EY903009       --> GAAAATGAGATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA
FD935573       --> GAAAATGAGATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
FD958802       --> GAAAATGAAATAAGCTTCCTGTATCTTCGAGCCACCCACTGCCAGGTTAA
EX758597       --> GAAAATGAGATAAGCCTCCTGAATCTTCGAGCCACCCACTGCCAGGTTAA

               546    -    596
UN17674        --> ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD973701       <-- ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EW732351       <-- ACCACGAGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EY924423       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EV551424       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD939447       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EY950074       <-- ACCACGAGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD981041       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EV539483       <-- ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD970985       <-- ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EY906959       <-- ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD544313       <-- ........................................ATATTGCTGC
FD976833       --> ..................................................
FD967222       --> ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD969342       --> ACCACGCGGTAGCAAGTTGAGTGAGAGTG.....................
EV546520       --> ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EY903009       --> ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD935573       --> ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
FD958802       --> ACCAGGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC
EX758597       --> ACCACGCGGTAGCAAGTTGAGTGAGAGTGTGGTCTTCGTCATATTGCTGC

               596    -    646
UN17674        --> ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD973701       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EW732351       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EY924423       <-- ATAACTC-AAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EV551424       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD939447       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EY950074       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD981041       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EV539483       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD970985       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EY906959       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAA--TA
FD544313       <-- ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD976833       --> ..................................................
FD967222       --> ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD969342       --> ..................................................
EV546520       --> ATAACTCCAAGCTGCTT.................................
EY903009       --> ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAAT--A
FD935573       --> ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
FD958802       --> ATAACTCCAAGCTGCTTCTCAGCATAATCTGTTCTATGCATCTTAATGAA
EX758597       --> ATAACTCCAAGCTGCTTCT...............................

               646    -    696
UN17674        --> TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TATCTGGACATTCAGCGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. landra
FD973701       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- TATCAGGACGTTCAAGGCATGCAGATCCATAGCCCCTCCAGCATGAGTGT  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- TATCTGGACATTCAGCACATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. landra
EV551424       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus sativus var. oleiformis
EY950074       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGGGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> TATCTGGACGTTCAAGGCATGCAGATCCATAGTCCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus sativus var. oleiformis
FD958802       --> TATCTGGACGTTCAAGGCATGCAGATCCATAGTTCCTCCAGCATGAGTGT  Raphanus raphanistrum subsp. maritimus
EX758597       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               696    -    746
UN17674        --> GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. landra
FD973701       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- GCTTCGGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. landra
EV551424       <-- GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus sativus var. oleiformis
EY950074       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAA............  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> GCTTCAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACAC.....  Raphanus sativus var. oleiformis
FD958802       --> GCTTGAGAGCTTCACTATAATCTTCCTCATGCATGAAAACAACACCAGCA  Raphanus raphanistrum subsp. maritimus
EX758597       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               746    -    796
UN17674        --> ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. landra
FD973701       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EW732351       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAGCCACTC  Raphanus sativus cv Rat-Tail Radish #3870
EY924423       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. landra
EV551424       <-- ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD939447       <-- ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus sativus var. oleiformis
EY950074       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus sativus cv Rat-Tail Radish #3870
FD981041       <-- ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (NY)
EV539483       <-- ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTCGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970985       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY906959       <-- ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD544313       <-- ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD976833       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD967222       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969342       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV546520       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EY903009       --> ACCAGTCGCAAAGTCGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD935573       --> ..................................................  Raphanus sativus var. oleiformis
FD958802       --> ACCAGTCGCAAAGTAGCATTGTTTCCTATTGTTGGATCTGCCAACCACTC  Raphanus raphanistrum subsp. maritimus
EX758597       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)

               796    -    846
UN17674        --> CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
FD973701       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGAGTCGATAGATACA
EW732351       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTGGATAGATACA
EY924423       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
EV551424       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
FD939447       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
EY950074       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTGGATAGATACA
FD981041       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
EV539483       <-- CCTCAAGCTTGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
FD970985       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGAGTCGATAGATACA
EY906959       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGAGTCGATAGATACA
FD544313       <-- CCTCAAGCTCGAAATCGTTGATTCCTTATTTGCAGGACTCGATAGATACA
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> CCTCAAGCTCGAAATCGTTGATTCCTTATTT...................
FD935573       --> ..................................................
FD958802       --> CCTCAAGCTCGAAATCG.................................
EX758597       --> ..................................................

               846    -    896
UN17674        --> TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
FD973701       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
EW732351       <-- TCGCGAGGAGCTTAACTGCCTGCAGAGGAGTAGCGGCGGATTCATCGATC
EY924423       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
EV551424       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
FD939447       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
EY950074       <-- TCGCGAGGAGCTTAACTGCCTGCAGAGGAGTAGCGGCGGATTCATCGATC
FD981041       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
EV539483       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
FD970985       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
EY906959       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
FD544313       <-- TCGCGAGGAGCTTAACTGCCTGCAGTGGAGTAGCGGCGGATTCATCGATC
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               896    -    946
UN17674        --> TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCc.................
FD973701       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
EW732351       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAGGATCGGAAGAC
EY924423       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
EV551424       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
FD939447       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
EY950074       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAGGATCGGAAGAC
FD981041       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
EV539483       <-- TCGTTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
FD970985       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
EY906959       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
FD544313       <-- TCGCTGATGACGAGCTGATAGCTACCGAGGGCGATGTAAGATCGGAAGAC
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               946    -    996
UN17674        --> GAGGCAGTCGCGCTCCACGGCGTCCTCCGGCGAGAGGTTACGGATCTCGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................
FD973701       <-- GAGGCAGTCGCGTTCCACGGCGTCCTCCGGCGAGAGGTTAGGGATCTCGC
EW732351       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCAGGCGAGAGGTTACGGATCTCGC
EY924423       <-- GAGGCAGTCGC.......................................
EV551424       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCCGGCGAGAGGTTACGGATCTCGC
FD939447       <-- GAGGCAGTCGCGCTCCACGGCGTCCTC-GGCGAGAGGTTACGGATCTCGC
EY950074       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCAGGCGAGAGGTTACGGATCTCGC
FD981041       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCCGGCGAGAGGTTACGGATCTCGC
EV539483       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCCGGCGAGAGGTTACGGATCTCGC
FD970985       <-- GAGGCAGTCGCGTTCCACGGCGTCCTCCGGCGAGAGGTTAGGGATCTCGC
EY906959       <-- GAGGCAGTCGCGTTCCACGGCGTCCTCCGGCGAGAGGTTAGGGATCTCGC
FD544313       <-- GAGGCAGTCGCGCTCCACGGCGTCCTCCGGCGAGAGGTTACGGATCTCGC
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               996    -   1046
UN17674        --> TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................
FD973701       <-- TGTTc.............................................
EW732351       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
EY924423       <-- ..................................................
EV551424       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
FD939447       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
EY950074       <-- TGTTGTTGATCGCCGTTTGATAGGCTCCCAGATAGAATTGGTTTCTCAGA
FD981041       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
EV539483       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
FD970985       <-- TGTTc.............................................
EY906959       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
FD544313       <-- TGTTGTTGATCGCCGTTTGATAAGCTCCCAGATAGAATTGGTTTCTCAGA
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               1046   -   1096
UN17674        --> TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................
FD973701       <-- ..................................................
EW732351       <-- TTGAATAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGC
EY924423       <-- ..................................................
EV551424       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCCTTGCTT-C
FD939447       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTT-C
EY950074       <-- TTGAATAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGC
FD981041       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTT-C
EV539483       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGC
FD970985       <-- ..................................................
EY906959       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCT--TCTT-C
FD544313       <-- TTGAAGAGGTGATCTGGCCCTGCTCCCATGCCTGCCATTGCTTTGCTTGC
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               1096   -   1146
UN17674        --> TTCTTCCTCTAGATCTCTATCTCACAGATCCGCGTCTTATTGGATTGCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY924217       <-- ..................................................
FD973701       <-- ..................................................
EW732351       <-- TTCTTCCTCTAGATCTtgcagatccgcccc....................
EY924423       <-- ..................................................
EV551424       <-- TTCTTCCc..........................................
FD939447       <-- TTCTTCCTCTAGATCTCTATCTCACAGATCCGCGTCTTATTGGATTGCGA
EY950074       <-- TTCTTCCTCTAGATCTtgcagatcccc.......................
FD981041       <-- TTCTTCCTCTAGATCTCTATCTCACAGATCCGCGTCTTATTGGATTGCGA
EV539483       <-- TTCTTCCTCTAGATCTCTATCTCACAGAagatccgcgtcttcc.......
FD970985       <-- ..................................................
EY906959       <-- TTCTTCCT..........................................
FD544313       <-- TTCTTCCTCTAGATCTCTATCTCACAGAagatc.................
FD976833       --> ..................................................
FD967222       --> ..................................................
FD969342       --> ..................................................
EV546520       --> ..................................................
EY903009       --> ..................................................
FD935573       --> ..................................................
FD958802       --> ..................................................
EX758597       --> ..................................................

               1146   -   1196
UN17674        --> AACGAAGTTCC
                   ~~~~~~~~~~~
EY924217       <-- ...........
FD973701       <-- ...........
EW732351       <-- ...........
EY924423       <-- ...........
EV551424       <-- ...........
FD939447       <-- AACGAAGTTCC
EY950074       <-- ...........
FD981041       <-- AACGAAGTTCC
EV539483       <-- ...........
FD970985       <-- ...........
EY906959       <-- ...........
FD544313       <-- ...........
FD976833       --> ...........
FD967222       --> ...........
FD969342       --> ...........
EV546520       --> ...........
EY903009       --> ...........
FD935573       --> ...........
FD958802       --> ...........
EX758597       --> ...........