1      -     51
UN17699        --> GGATCCAAAAACACATCCTTCAGACCAATCTTCCCACTTCAAAAGTCTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................
EV539728       <-- ..................................................
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> GGATCCAAAAACACATCCTTCAGACCAATCTTACCACTTCAAAAGTCTTC
FD964789       --> ....................gAGACCAATCTTCCCACTTCAAAAGTCTTC
FD965082       --> ....................gAGACCAATCTTCCCACTTCAAAAGTCTTC
FD542113       --> ..............................ggaCCACTTCAAAAGTCTTC
EV566021       --> .................................ggACTTCAAAAGTCTTC
FD973888       --> ................................gggACTTCAAAAGTCTTC
FD946629       --> ................................................gg
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ..................................................

               51     -    101
UN17699        --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................
EV539728       <-- ..................................................
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
FD964789       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
FD965082       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
FD542113       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
EV566021       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
FD973888       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTC-AAA--T
FD946629       --> ACTCGTCACTTCACTTCACAAACAATCTCTGAATCTCTCTCTCTCTC--T
FY428291       --> ..............TTCACAAACAATCTCTGAATCTCTCTCTCTCTC---
EV538137       --> ..............gggACAAACAATCTCTGAATCTCTCTCTCTCTC---
EV527364       --> ................ggaAAACAATCTCTGAATCTCTCTCTCTCTC--T
EV548182       --> ..................gAAACAATCTCTGAATCTCTCTCTCTCTC---
EV567278       --> .................ggAAACAATCTCTGAATCTCTCTCTCTCAA--A
EV569339       --> .................ggAAACAATCTCTGAATCTCTCTCTCTCTCAAA
EY937796       --> .................ggAAACAATCTCTGAATCTCTCTCTCAAAA--T
FD937741       --> ................gggAAACAATCTCTGAATCTCTCTCTCTCTC--T
EV567594       --> .....................ggAATCTCTGAATCTCTCTCTCTCTC--A
FD534100       --> ............................ggGAATCTCTCTCTCTCTC--T
EV527008       --> ....................................CTCTCTCTCTC--T
FY445692       --> ............................................CTC--T
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ..................................................

               101    -    151
UN17699        --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................
EV539728       <-- ..................................................
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> CTCTCA--AAATCAGATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD964789       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD965082       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD542113       --> CTCTCA--AAATCAGATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV566021       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD973888       --> C-------AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD946629       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY428291       --> ---------AATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV538137       --> -----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCACACCAAGTT
EV527364       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV548182       --> -----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV567278       --> T----C--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV569339       --> C----C--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EY937796       --> C-------AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD937741       --> C---TC--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV567594       --> A----ATCAAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FD534100       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
EV527008       --> C----A--AAATCAAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY445692       --> C----T--CAATC-AATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY439039       --> ....tctctcaatcAATGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY429296       --> ................TGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY437415       --> ................TGACGACACTCTTAGGGTTCTCTCATACCAAGTT
FY445026       --> ........................CTCTTAGGGTTCTCTCATACCAAGTT
FY430625       --> .........................TCTTAGGGTTCTCTCATACCAAGTT
FY429295       --> ...............................................GTT
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ..................................................

               151    -    201
UN17699        --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. maritimus
FD965082       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. maritimus
FD542113       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCCCATCTTCCTCCA  Raphanus raphanistrum subsp. landra
FD973888       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCCCATCTTCCTCCA  Raphanus sativus cv Early Scarlet Globe
FY428291       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
EV538137       --> ACCCAACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. maritimus
EV548182       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCCCATCTTCCTCCA  Raphanus raphanistrum subsp. landra
EV569339       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCCCATCTTCCTCCA  Raphanus raphanistrum subsp. landra
EY937796       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv Early Scarlet Globe
FD937741       --> ACCCAACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus var. oleiformis
EV567594       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCCCATCTTCCTCCA  Raphanus raphanistrum subsp. landra
FD534100       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. maritimus
EV527008       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. maritimus
FY445692       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY439039       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY429296       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY437415       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY445026       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY430625       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
FY429295       --> ACCCCACTGCAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus sativus cv GSK3-1
EV537921       --> .........gAACGTCTCTATCACTTCTCCAACATGCTCATCTTCCTCCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> ..................................................  Raphanus sativus cv GSK3-1
EX772586       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558374       --> ..................................................  Raphanus raphanistrum subsp. landra

               201    -    251
UN17699        --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. maritimus
FD965082       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. maritimus
FD542113       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. landra
FD973888       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv Early Scarlet Globe
FY428291       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
EV538137       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. maritimus
EV548182       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> CGGTTGTCTCAATGGTGGGGAGACGCTCTGATTCCAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. landra
EV569339       --> CGGTTGTCTCAATGGTGGGGAGACGCTCTGATTCCAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. landra
EY937796       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv Early Scarlet Globe
FD937741       --> CGGTGGTCTCGATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus sativus var. oleiformis
EV567594       --> CGGTTGTCTCAATGGTGGGGAGACGCTCTGATTCCAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. landra
FD534100       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. maritimus
EV527008       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. maritimus
FY445692       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY439039       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY429296       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY437415       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY445026       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY430625       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
FY429295       --> CGGTGGTCTCAATGGTGGGGAGACGCTCTGATTCAAAGACTCTCCGGTCA  Raphanus sativus cv GSK3-1
EV537921       --> CGGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> .GGTGGTCTCAATGGTGGGGAGACGCTCCGATTCAAAGACTCTCCGGTCA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> .....................................GACTCTCCGGTCA  Raphanus sativus cv GSK3-1
EX772586       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558374       --> ..................................................  Raphanus raphanistrum subsp. landra

               251    -    301
UN17699        --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> GGCTTCCTAGGCCGTATCACTCACCGTGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACCGGTCG  Raphanus raphanistrum subsp. maritimus
FD965082       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACCGGTCG  Raphanus raphanistrum subsp. maritimus
FD542113       --> GGCTTCCTAGGCCGTATCACTCACCGTGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. landra
FD973888       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> GGCTTCCTAGGCCGTATCACTTACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv Early Scarlet Globe
FY428291       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
EV538137       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. maritimus
EV548182       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. landra
EV569339       --> GGCTTCCTAGGCCGTATCACTCACCACGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. landra
EY937796       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv Early Scarlet Globe
FD937741       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus var. oleiformis
EV567594       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. landra
FD534100       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. maritimus
EV527008       --> GGCTTCCTCGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. maritimus
FY445692       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY439039       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY429296       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY437415       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY445026       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY430625       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
FY429295       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
EV537921       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTGCCCTCGACTGGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> GGCTTCCTAGGCCGTATCACTCACCATGATCGCCTACCCTCGACTGGTCG  Raphanus sativus cv GSK3-1
EX772586       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558374       --> ..................................................  Raphanus raphanistrum subsp. landra

               301    -    351
UN17699        --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. maritimus
FD965082       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. maritimus
FD542113       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. landra
FD973888       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv Early Scarlet Globe
FY428291       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
EV538137       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. maritimus
EV548182       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> TAGAAGCTCATCAACAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. landra
EV569339       --> TAGAAGCTCATCAACAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. landra
EY937796       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv Early Scarlet Globe
FD937741       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus var. oleiformis
EV567594       --> TAGAAGCTCATCAACAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. landra
FD534100       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. maritimus
EV527008       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. maritimus
FY445692       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY439039       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY429296       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY437415       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY445026       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY430625       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
FY429295       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
EV537921       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> GAGAAGCTCATCAGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> GAGAAGCTCGTCCGCAGTGAAAATGTCGTGGGACGGTTCTCTCGCTTCCG  Raphanus sativus cv GSK3-1
EX772586       --> ..................................................  Raphanus raphanistrum subsp. landra
FD558374       --> ..................................................  Raphanus raphanistrum subsp. landra

               351    -    401
UN17699        --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ..............CAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV539728       <-- .....................................AGAGGCAATCAAG
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD964789       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD965082       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD542113       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV566021       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD973888       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCGATCAAG
FD946629       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY428291       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV538137       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV527364       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV548182       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV567278       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV569339       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EY937796       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD937741       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV567594       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FD534100       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV527008       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY445692       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY439039       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY429296       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY437415       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY445026       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY430625       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY429295       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV537921       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EV534945       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
FY434931       --> TCAAGCTGATCATCCAAGGCAAAAACCTCGAGTTATCAGAGGCAATCAAG
EX772586       --> ..............................gGTTATCAGAGGCAATCAAG
FD558374       --> ..................................................

               401    -    451
UN17699        --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV539728       <-- CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGCCATCT
FD964789       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD965082       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD542113       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGCCATCT
EV566021       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD973888       --> CAGCATGTGGAGGATAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD946629       --> CAGCATGTTGGGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY428291       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV538137       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV527364       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV548182       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV567278       --> CAGCATGTGGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV569339       --> CAGCATGTGGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EY937796       --> CAGCATGTTGAGGACAAAGTAGGGAAAGCTGTTCAGAAGCACAGTCATCT
FD937741       --> CAGCATGTTGAGGACCAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV567594       --> CAGCATGTGGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD534100       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV527008       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY445692       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY439039       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY429296       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY437415       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY445026       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY430625       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY429295       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV537921       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EV534945       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FY434931       --> CAGCATGTTGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
EX772586       --> CAGCATGTGGAGGACAAAGTAGGAAAAGCTGTTCAGAAGCACAGTCATCT
FD558374       --> ..................................................

               451    -    501
UN17699        --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV539728       <-- CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> CGTCAGAGAAGTTGATGTGAGACTCCCTGTTCGAGGTGGAGAGTTTGGTA
FD964789       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD965082       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD542113       --> CGCCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV566021       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD973888       --> TGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD946629       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY428291       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV538137       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV527364       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV548182       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV567278       --> CGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV569339       --> CGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EY937796       --> CGTGAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD937741       --> CGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV567594       --> CGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD534100       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV527008       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY445692       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY439039       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY429296       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY437415       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY445026       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY430625       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY429295       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV537921       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EV534945       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FY434931       --> CGTCAGAGAAGTTGATGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
EX772586       --> CGTCAGAGAAGTTGACGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA
FD558374       --> ...............gGTGAGACTCTCTGTTCGAGGTGGAGAGTTTGGTA

               501    -    551
UN17699        --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV539728       <-- AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD969482       <-- ..................................................
FD538253       <-- ..................................................
EV542218       <-- ..................................................
FD542385       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAC
FD964789       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD965082       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD542113       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAC
EV566021       --> AAGGACCCAAGATCCTTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD973888       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD946629       --> AAGGACCCAAGATCCGTAGATGCTAGGTAACACTGTTTACAAAGAAGCAT
FY428291       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV538137       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACGAAGAAGCAT
EV527364       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV548182       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV567278       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV569339       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EY937796       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD937741       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV567594       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD534100       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV527008       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY445692       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY439039       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY429296       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY437415       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY445026       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY430625       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY429295       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV537921       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EV534945       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FY434931       --> AAGGACCCAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
EX772586       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT
FD558374       --> AAGGACCTAAGATCCGTAGATGCGAGGTAACACTGTTTACAAAGAAGCAT

               551    -    601
UN17699        --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTCTACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGATGGTA..............  Raphanus raphanistrum subsp. maritimus
FD965082       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGATGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. maritimus
FD542113       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra
FD973888       --> GGCGTTGTTCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv Early Scarlet Globe
FY428291       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
EV538137       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTCTACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. maritimus
EV548182       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> GGTGTTGTGCGCGGCGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra
EV569339       --> GGTGTTGTGCGCGGCGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra
EY937796       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv Early Scarlet Globe
FD937741       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus var. oleiformis
EV567594       --> GGTGTTGTGCGCGGCGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra
FD534100       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. maritimus
EV527008       --> GGTGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. maritimus
FY445692       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY439039       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY429296       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY437415       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY445026       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY430625       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
FY429295       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
EV537921       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTCTACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> GGCGTTGTGCGCGGTGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus sativus cv GSK3-1
EX772586       --> GGTGTTGTGCGCGGCGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra
FD558374       --> GGTGTTGTGCGCGGCGAGGAAGATGCTGAGACGGTATACGCTTGTATCGA  Raphanus raphanistrum subsp. landra

               601    -    651
UN17699        --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGTAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- ...............AATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- ....................AGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAG-  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965082       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. maritimus
FD542113       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGA............  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra
FD973888       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGGGGAAGATCAAGGAGAAGG  Raphanus sativus cv Early Scarlet Globe
FY428291       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
EV538137       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. maritimus
EV548182       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra
EV569339       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra
EY937796       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCGAGGAGAAGG  Raphanus sativus cv Early Scarlet Globe
FD937741       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus var. oleiformis
EV567594       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra
FD534100       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAAGAGAA..  Raphanus raphanistrum subsp. maritimus
EV527008       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. maritimus
FY445692       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY439039       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY429296       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY437415       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY445026       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY430625       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
FY429295       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
EV537921       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGTAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> CTTGGTATCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> CTTGGTTTCAACGATAATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus sativus cv GSK3-1
EX772586       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra
FD558374       --> CTTGGTATCAACGATTATACAGAGGAAGCTGAGGAAGATCAAGGAGAAGG  Raphanus raphanistrum subsp. landra

               651    -    701
UN17699        --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ACTCCGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV539728       <-- ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FD969482       <-- ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FD538253       <-- ACTCTGACCATGGAAGGCACATGAAAGGCTTCAACAGGTCGAAGGTGAGA
EV542218       <-- ..................................................
FD542385       --> ACTCTGACCATGGAAG-CACATGAAAG-TTTCA.................
FD964789       --> ..................................................
FD965082       --> ACTCTGACCATGGAAAGCACATG...........................
FD542113       --> ..................................................
EV566021       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FD973888       --> ACTCTGACCATGGA-GGCACATGAAAGGTTTCA.................
FD946629       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY428291       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV538137       --> ACTCCGACCATGGAAGGCACATGCAAGGTTTCAACAGGTCGAAGGTGAGA
EV527364       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV548182       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV567278       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV569339       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EY937796       --> ACTCTGACCATGGAAG-CACATGAAAGGTTTCAACAGGTCGAAAGTGAGA
FD937741       --> ACTCTGACCATGGAAGGCACATGAAATGTTTCAACAGGTCGAAGGTGAGA
EV567594       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FD534100       --> ..................................................
EV527008       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY445692       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY439039       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY429296       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY437415       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY445026       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY430625       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY429295       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV537921       --> ACTCCGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EV534945       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FY434931       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA
EX772586       --> ACTCTGACCATGGAAGGCGCATGAAAGGTTTCAACAGGTCGAAGGTGAGA
FD558374       --> ACTCTGACCATGGAAGGCACATGAAAGGTTTCAACAGGTCGAAGGTGAGA

               701    -    751
UN17699        --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- GAGCCTGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- GAGCCTGTGATTGAGCCCGTTGTGGGGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965082       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD542113       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> GAGCCTGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra
FD973888       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGGGA  Raphanus sativus cv Early Scarlet Globe
FY428291       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
EV538137       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> GAGCCTGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. maritimus
EV548182       --> GAGCCTGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra
EV569339       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra
EY937796       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv Early Scarlet Globe
FD937741       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus var. oleiformis
EV567594       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra
FD534100       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527008       --> GAGCCTGTGATTGAGCCCGTTGAGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. maritimus
FY445692       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY439039       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY429296       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY437415       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY445026       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY430625       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
FY429295       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus sativus cv GSK3-1
EV537921       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> GAGCCTGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> ..................................................  Raphanus sativus cv GSK3-1
EX772586       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra
FD558374       --> GAGCCAGTGATTGAGCCCGTTGTGGAGGATCCTGAGGACGTTGCTGGAGA  Raphanus raphanistrum subsp. landra

               751    -    801
UN17699        --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV539728       <-- A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FD969482       <-- A-GAAGCAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FD538253       <-- A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV542218       <-- ..................................................
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> AAGGAGAAGAGGATGATTTGGTCAA-GGAGATTGTGCGTACCAAGTACTT
FD973888       --> ..................................................
FD946629       --> A-GAAGAAGAGGATGATTTGATCAA-G-AGATTGTGCGTAC-AAGTACTT
FY428291       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV538137       --> ..................................................
EV527364       --> Aagaga............................................
EV548182       --> A-AGAGAAGAGGATGATTTGGTCAA-G-AGATTGTGCGTACCAAGTACTT
EV567278       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV569339       --> A-GAAGAGGAGGATGATTTGATCAAAGGAGATTGTGCGTACCAAGTACTT
EY937796       --> A-GA..............................................
FD937741       --> A-GAAGA-GAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV567594       --> A-GAAGAAGAGGATGATTTGATCAA-AGAGATTGTGCGTACCAAGTACTT
FD534100       --> ..................................................
EV527008       --> A-AGAGAAGAGGATGATTTGGTCAA-GGAGATTGTGCGTACCAAGTACTT
FY445692       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY439039       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY429296       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY437415       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY445026       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY430625       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FY429295       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV537921       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
EV534945       --> A-GAAGAAGAGGATGATTTGA.............................
FY434931       --> ..................................................
EX772586       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT
FD558374       --> A-GAAGAAGAGGATGATTTGATCAA-GGAGATTGTGCGTACCAAGTACTT

               801    -    851
UN17699        --> TGAGATGCCACCATTGACCGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- TGAGATGCCACCATTGACTGTTTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- TGAGATGCCACCATTGACTGTTTTTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- TGAGATGCCACCATTGACCGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- TGAGATGCCACCATTGACTGTTTTTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- ...........................GGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965082       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD542113       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> TGAGATGCCACCATTGACCGTCTCT.........................  Raphanus raphanistrum subsp. landra
FD973888       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> TGAGATGCCACCATTGACCGTCTCTGAG-CAGTGGAGCGGCTGGAGT-AG  Raphanus sativus cv Early Scarlet Globe
FY428291       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
EV538137       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV548182       --> TGAGATGCCACCATTGATCGTCTCTGAG-CAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> TGAGATGCCACCATTGACTGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. landra
EV569339       --> TGAGATGCCACCATTGACTGTCTCTGAG-CAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. landra
EY937796       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD937741       --> TGAGATGCCACCATTGACCGTCTCAGAG-CAGTGGAGCAGTTGGAGTTAG  Raphanus sativus var. oleiformis
EV567594       --> TGAGATGCCACCATTGACTGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. landra
FD534100       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527008       --> TGAGATGCCACCATTGACCGTCTCTGAG-CAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. maritimus
FY445692       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY439039       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY429296       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY437415       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY445026       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY430625       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
FY429295       --> TGAGATGCCACCATTGACCGTCTCAGAGGCAGTGGAGCAGTTGGAGTTAG  Raphanus sativus cv GSK3-1
EV537921       --> TGAGATGCCACCATTGACTGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> ..................................................  Raphanus sativus cv GSK3-1
EX772586       --> TGAGATGCCACCATTGACTGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. landra
FD558374       --> TGAGATGCCACCATTGACTGTCTCTGAGGCAGTGGAGCAGCTGGAGTTAG  Raphanus raphanistrum subsp. landra

               851    -    901
UN17699        --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- TATCTCACGATTTTTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539728       <-- TATCTCACGATTTTTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD969482       <-- TATCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538253       <-- TATCTCACGATTTTTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV542218       <-- TATCTCACGATTTTTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542385       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD964789       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD965082       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD542113       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV566021       --> ..................................................  Raphanus raphanistrum subsp. landra
FD973888       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD946629       --> TAGCTCACGATT-CTACG-CTT-CAG-ATGAAGAAc..............  Raphanus sativus cv Early Scarlet Globe
FY428291       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
EV538137       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV527364       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV548182       --> TAGCTCATGATTTCTATGGCTTCCA.........................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV567278       --> TAGCTCATGATTTCT...................................  Raphanus raphanistrum subsp. landra
EV569339       --> TAGCTCATGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus raphanistrum subsp. landra
EY937796       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FD937741       --> TAGCTCACGATTTCT...................................  Raphanus sativus var. oleiformis
EV567594       --> TAGCTCATGGTTTC....................................  Raphanus raphanistrum subsp. landra
FD534100       --> ..................................................  Raphanus raphanistrum subsp. maritimus
EV527008       --> TAGCTCATGATTTCT...................................  Raphanus raphanistrum subsp. maritimus
FY445692       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY439039       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY429296       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY437415       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY445026       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY430625       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
FY429295       --> TAGCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus sativus cv GSK3-1
EV537921       --> TATCTCACGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAC  Raphanus raphanistrum subsp. raphanistrum (MS)
EV534945       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FY434931       --> ..................................................  Raphanus sativus cv GSK3-1
EX772586       --> TAGCTCATGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus raphanistrum subsp. landra
FD558374       --> TAGCTCATGATTTCTACGGCTTCCAGAATGAAGAAACCGGTGAGATAAAT  Raphanus raphanistrum subsp. landra

               901    -    951
UN17699        --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA
EV539728       <-- ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTTTGATAATCCCTAAGAA
FD969482       <-- ATAGTGTACAACA-AAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA
FD538253       <-- ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTTTGATAATCCCTAAGAA
EV542218       <-- ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTTTGATAATCCCTAAGAA
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ATAGTGTACAAG......................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ATAGTGTACAAGAGAA..................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTA.....................
FY439039       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTA....
FY429296       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTA.....................
FY437415       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAA..........
FY445026       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA
FY430625       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA
FY429295       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTA....
EV537921       --> ATAGTGTACAAGAGAA..................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ATAGTGTACA........................................
FD558374       --> ATAGTGTACAAGAGAAAAGAAGGAGGGTACGGTCTGATAATCCCTAAGAA

               951    -   1001
UN17699        --> AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
EV539728       <-- AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
FD969482       <-- AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
FD538253       <-- AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
EV542218       <-- AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> AGATGGCAAGGCTGAGAAAGTTGATCCGCT....................
FY430625       --> AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACT.............
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> AGATGGCAAGGCTGAGAAAGTTGATCCGCTTCCAACTGAGCAATTGAATG

               1001   -   1051
UN17699        --> AACACTCTTTTGCTGAGTAGACTTGTGTGTCTGTCTCAGAACCAAAACTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- AACACTCTTTTGCTGAGTAGACTTGTGTGTCTGTCTCAGAACCAAAACTG
EV539728       <-- AACACTCTTTTGCTGAGTAGGCTTGTGTGTCTGTTTCAGAACCAAAACTG
FD969482       <-- AACACTCTTTTGCTGAGTAGACTTGTGTGTCTGTCTCAGAACCAAAACTG
FD538253       <-- AACACTTTTTTGCTGAGTAGACTTGTG.......................
EV542218       <-- AACACTCTTTTGCTGAGTAGACTTGTGTGTCTGTTTCAGAACCAAAACTG
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> AACACTCTTTTGCTGAGTAGACTTGTGTGTCTGTCTCGGAACCAAAACTG

               1051   -   1101
UN17699        --> ATGTTACTTCTCTCCTTACAGATGGTTTGCATGTATGGATATGGGCTAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- ATGTTACTTCTCTCCTTACAGATGGTTTGCATGTATGGATATGGGCTAAG
EV539728       <-- ATGTTACTTCTCTCCTTACAGATGGTTTGCATGTATGGATATGGGCTAAG
FD969482       <-- ATCTTACTTCTCTCCTTACAGATGGTTTGCATGTATGGATATGGGCTAAG
FD538253       <-- ..................................................
EV542218       <-- ATGTTACTTCTCTCCTTACAGATGGTTTGCATGTATGGATATGGGCTAAG
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ATCTTACTTCTCTCCCTACAGATGGTTTGCATGTA...............

               1101   -   1151
UN17699        --> GGTTCTTGAGAGAAAACAGTGAAAGAAATTGAATTTGTTATGGTTCAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- GGTTCTTGAGAGAAAACAGTGAAAGAAATTGAATTTGTTATGGTTCAGGA
EV539728       <-- GGTTCTTGAGAGAA....................................
FD969482       <-- GGTTCTTGAGAGAAAACAGTGAAAGAAATTGAATCTGTTATGGTTCAGGA
FD538253       <-- ..................................................
EV542218       <-- GGTTCTTGAGAGAAAACAGTGAAAGAAATTGAATTTGTTATGGTTCAGGA
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ..................................................

               1151   -   1201
UN17699        --> AACAGTGTAAATAATAATAAAAGGCTAGAGAACTTTTTTTT-AAATGATT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- AACAGTGTAAATAATAATAAAAGGCTAGAGAACTTTTTTTT-AAATGATc
EV539728       <-- ..................................................
FD969482       <-- AACAGTGTACATAATAATAAAAGGCTAGAGAACTTTTTTCT-AAATGATT
FD538253       <-- ..................................................
EV542218       <-- AACAGTGTAAATAATAATAAAAGGCTAGAGAACTTTTTTTTTAAATGATT
FD542385       --> ..................................................
FD964789       --> ..................................................
FD965082       --> ..................................................
FD542113       --> ..................................................
EV566021       --> ..................................................
FD973888       --> ..................................................
FD946629       --> ..................................................
FY428291       --> ..................................................
EV538137       --> ..................................................
EV527364       --> ..................................................
EV548182       --> ..................................................
EV567278       --> ..................................................
EV569339       --> ..................................................
EY937796       --> ..................................................
FD937741       --> ..................................................
EV567594       --> ..................................................
FD534100       --> ..................................................
EV527008       --> ..................................................
FY445692       --> ..................................................
FY439039       --> ..................................................
FY429296       --> ..................................................
FY437415       --> ..................................................
FY445026       --> ..................................................
FY430625       --> ..................................................
FY429295       --> ..................................................
EV537921       --> ..................................................
EV534945       --> ..................................................
FY434931       --> ..................................................
EX772586       --> ..................................................
FD558374       --> ..................................................

               1201   -   1251
UN17699        --> CTGTTTTACTCTATTTGAGGTAGAAAGAAAATTGAATCTGAAG..
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV542054       <-- c............................................
EV539728       <-- .............................................
FD969482       <-- CTGTTCTACTCTATTTGAGGTAG......................
FD538253       <-- .............................................
EV542218       <-- CTGTTTTACTCTATTTGAGGTAGAAAGAAAATTGAATCTGAAGct
FD542385       --> .............................................
FD964789       --> .............................................
FD965082       --> .............................................
FD542113       --> .............................................
EV566021       --> .............................................
FD973888       --> .............................................
FD946629       --> .............................................
FY428291       --> .............................................
EV538137       --> .............................................
EV527364       --> .............................................
EV548182       --> .............................................
EV567278       --> .............................................
EV569339       --> .............................................
EY937796       --> .............................................
FD937741       --> .............................................
EV567594       --> .............................................
FD534100       --> .............................................
EV527008       --> .............................................
FY445692       --> .............................................
FY439039       --> .............................................
FY429296       --> .............................................
FY437415       --> .............................................
FY445026       --> .............................................
FY430625       --> .............................................
FY429295       --> .............................................
EV537921       --> .............................................
EV534945       --> .............................................
FY434931       --> .............................................
EX772586       --> .............................................
FD558374       --> .............................................