RadishBase

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Alignment for radish unigene UN17710

               1      -     51
UN17710        --> CGAAAGTTCTAAGAAGTCAAGCAGTGTGAAGATAATTGTTCCTGTGGTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> CGAAAGTTCTAAGAAGTCAAGCAGTGTGAAGATAATTGTTCCTGTGGTTG
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               51     -    101
UN17710        --> GTGGTGTTGTTGGTGCATTGTGTCTTGTGGGACTCGGTGTTTGCCTCTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> GTGGTGTTGTTGGTGCATTGTGTCTTGTGGGACTCGGTGTTTGCCTCTAC
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               101    -    151
UN17710        --> GCCAAGAAGGGAATGAGACCCGCTAAAGTGCAGAGCCCAAACACCACCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> GCCAAGAAGGGAATGAGACCCGCTAAAGTGCAGAGCCCAAACACCACCAA
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               151    -    201
UN17710        --> CATGGTGATTCATCCTCATCACTCTGGTGACAGCGATGCGATTAAACTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> CATGGTGATTCATCCTCATCACTCTGGTGACAGCGATGCGATTAAACTCA
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               201    -    251
UN17710        --> CTGTTGCAGCTTCTAGTCTCAACAATGGGGGAGGAGGAGGAGGAACCGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> CTGTTGCAGCTTCTAGTCTCAACAATGGGGGAGGAGGAGGAGGAACCGAG
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               251    -    301
UN17710        --> AGCTCTTACAGTCACAGCGGAAGCGCCAACAGTGACATACACGTCGTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> AGCTCTTACAGTCACAGCGGAAGCGCCAACAGTGACATACACGTCGTGGA
EV550201       --> ........gAGTCACAGCGGAAGCGCCAACAGTGACATACACGTCGTGGA
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               301    -    351
UN17710        --> GTCTGGTAACTTGGTGATATCCATACAGGTTCTGAGGAGTGTGACTAACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> GTCTGGTAACTTGGTGATATCCATACAGGTTCTGAGGAGTGTGACTAACA
EV550201       --> GTCTGGTAACTTGGTGATATCCATACAGGTTCTGAGGAGTGTGACTAACA
FD548721       --> ....................gCATACAGGTTCTGAGGAAGGTGACTAACA
FD964610       --> ...................................GGAGTGTGACTAACA
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               351    -    401
UN17710        --> ACTTCAGCGAAGAGAATATACTCGGGAGAGGCGGTTTCGGTGTAGTTTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> ACTTCAGCGAAGAGAATATACTCGGGAGAGGCGGTTTCGGTGTAGTTTAC
EV550201       --> ACTTCAGCGAAGAGAATATACTCGGGAGAGGCGGTTTCGGTGTAGTTTAC
FD548721       --> ACTTCAGCGAAGAGAATATACTCGGGAGAGGCGGTTTCGGTGTAGTTTAC
FD964610       --> ACTTCAGCGAAGAGAATATACTCGGGATAGGCGGTTTCGGTGTAGTTTAC
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               401    -    451
UN17710        --> AAAGGTGAACTCCATGATGGAACTAAAATAGCTGTCAAGAGGATGGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> AAAGGTGAACTCCATGATGGAACTAAAATAGCTGTCAAGAGGATGGAGTC
EV550201       --> AAAGGTGAACTCCATGATGGAACTAAAATAGCTGTCAAGAGGATGGAGTC
FD548721       --> AAAGGTGAACTCCATGATGGAACTAAAATAGCTGTCAAGAGGATGGAGTC
FD964610       --> AAAGGTGAACTCCATGATGGAACTAAAATAGCTGTCCAGAGGATGGAGTC
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               451    -    501
UN17710        --> TTCTTCGGTTGTGAGTGATAAGGGACTCGCTGAGTTCAAATCAGAGATCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> TTCTTCGGTTGTGAGTGATAAGGGACTCGCTGAGTTCAAATCAGAGATCA
EV550201       --> TTCTTCGGTTGTGAGTGATAAGGGACTCGCTGAGTTCAAATCAGAGATCA
FD548721       --> TTCTTCGGTTGTGAGTGATAAGGGACTCGCTGAGTTCAAATCAGAGATCA
FD964610       --> TTCTTCGGTTGTGAGTGATAAGGGACTCGCTGAGTTCAAATCAGAGATCA
FD989377       --> ..........................................gGAGATCA
EX764779       --> ............................................gGATCA
EX887650       --> ..................................................

               501    -    551
UN17710        --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
EV550201       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
FD548721       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
FD964610       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
FD989377       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
EX764779       --> CGGTTTTGACTAAAATGCGTCACCGTCATCTTGTTGCGCTTCTAGGGTAC
EX887650       --> ..................................................

               551    -    601
UN17710        --> TGCCTTGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> TGCCTCGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
EV550201       --> TGCCTTGATGGTAACGAGAGGCTTCTTGTCTGTGAGTACATGCCGCAAGG
FD548721       --> TGCCTTGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
FD964610       --> TGCCTTGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
FD989377       --> TGCCTTGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
EX764779       --> TGTCTTGATGGTAACGAGAGGCTTCTTGTCTATGAGTACATGCCGCAAGG
EX887650       --> ..................................................

               601    -    651
UN17710        --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
EV550201       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
FD548721       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
FD964610       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
FD989377       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
EX764779       --> AACACTGAGCCAGCATCTGTTCCACTGGAAAGAAGAAGAGCGTAAACCAC
EX887650       --> ..................................................

               651    -    701
UN17710        --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> TTGATTGGACTAGAAAGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
EV550201       --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
FD548721       --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
FD964610       --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
FD989377       --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
EX764779       --> TTGATTGGACTAGAAGGTTGGCTATCGCGTTGGATGTAGCTAGGGGTGTG
EX887650       --> ..................................................

               701    -    751
UN17710        --> GAGTATTTACACACGCTTGCTCATCAGAGTTTCATCCATAGGGATCTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................................................
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> GAGTATTTACACACGCTTGCTCATCAGAGTCTCATCCATAGGGATCTAAA
EV550201       --> GAGTATTTACACACGCTTGCTCATCAGAGTTTCATCCATAGGGATCTAAA
FD548721       --> GAGTATTTACACACGCTTGCTCATCAGATTTTCATCCATAGGGATCTAAA
FD964610       --> GAGTATTTACACACGCTTGCTCATCAGAGTTTCATCCATAGGGATCTAAA
FD989377       --> GAGTATTTACACACGCTTGCTCATCAGAGTTTCATCCATAGGGATCTAAA
EX764779       --> GAGTATTTACACACGCTTGCTCATCAGAGTTTCATCCATAGGGATCTAAA
EX887650       --> ...............................TCATCCATAGGGATCTAAA

               751    -    801
UN17710        --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ..................TGGTGATGATATGCGTGCTAAAGTCTCCGACT
FD977735       <-- ..................................................
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGC..............
EV550201       --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
FD548721       --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
FD964610       --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
FD989377       --> ACCATCTAACATCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
EX764779       --> ACCATCTAACAGCCTTCTTGGTGATGATATGCGTGCTAAAGTCTCCGACT
EX887650       --> ACCATCTAACATCCTTCTTGGTGATGACATGCGTGCTAAAGTCTCTGACT

               801    -    851
UN17710        --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
FD977735       <-- ...................................TCCATCGAGACGAGA
EX891752       <-- ..................................................
EX768631       <-- ..................................................
EX900480       <-- ..................................................
EV544927       <-- ..................................................
FD544867       <-- ..................................................
FD985165       <-- ..................................................
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
FD548721       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACCCCATCGAGACGAGA
FD964610       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
FD989377       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
EX764779       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA
EX887650       --> TTGGGTTAGTCCGCTTAGCCCCTGAAGGCAAATACTCCATCGAGACGAGA

               851    -    901
UN17710        --> GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
FD977735       <-- GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
EX891752       <-- ....................CCTTGCTCCAGAATATGCAGTGACGGGAAG
EX768631       <-- .........................gCCCTGAATATGCAGTGACTGGAAG
EX900480       <-- .........................ctccaGAATATGCAGTGACGGGAAG
EV544927       <-- ................................ATATGCAGTGACTGGAAG
FD544867       <-- ................................ATATGCAGTGACTGGAAG
FD985165       <-- ................................ATATGCAGTGACTGGAAG
FD969762       <-- ..................................................
FD960567       <-- ..................................................
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
FD548721       --> GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
FD964610       --> GTCGCTGGGA........................................
FD989377       --> GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
EX764779       --> GTCGCTGGGACCTTCGGTTACCTTGCCCCTGAATATGCAGTGACTGGAAG
EX887650       --> GTCGCTGGGACCTTCGGTTACCTTGCTCCAGAATATGCAGTGACGGGAAG

               901    -    951
UN17710        --> AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977735       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891752       <-- AGTGACGACTAAGGTAGACATATTCAGCCTCGGGGTCATACTTATGGAGC  Raphanus sativus var. oleiformis
EX768631       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900480       <-- AGTGACGACCAAGGTAGACATGTTCAGCCTCGGGGTCATACTTATGGAGC  Raphanus sativus cv Early Scarlet Globe
EV544927       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544867       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985165       <-- AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. landra
FD969762       <-- ....ACGACCAAGGTAGACATATTCAGCCTCGGGGTCATTTTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960567       <-- ................................GGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. maritimus
FY428956       <-- ..................................................  Raphanus sativus cv GSK3-1
EV549457       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV550201       --> AGTGACGACCAAG-TAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548721       --> AGTGACGACCAAAGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964610       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD989377       --> AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. landra
EX764779       --> AGTGACGACCAAGGTAGATATCTTCAGCCTCGGGGTCATATTAATGGAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887650       --> AGTGACGACTAAGGTAGACATATTCAGCCTCGGGGTCATACTTATGGAGC  Raphanus sativus var. oleiformis

               951    -   1001
UN17710        --> TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD977735       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACATCGTC
EX891752       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
EX768631       <-- TA-T-ACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
EX900480       <-- TAATCACTGGTCGTAAAGCCTTGGATGAGACGCAACCTGAGGACAGCGTC
EV544927       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD544867       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD985165       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD969762       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD960567       <-- TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAATCTGAGGACAGCGTC
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
FD548721       --> TAA...............................................
FD964610       --> ..................................................
FD989377       --> TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
EX764779       --> TA-T-ACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC
EX887650       --> TAATCACTGGTCGTAAAGCCTTAGATGAGACGCAACCTGAGGACAGCGTC

               1001   -   1051
UN17710        --> CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FD977735       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
EX891752       <-- CATCTAGTGACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
EX768631       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
EX900480       <-- CATCTAGTCACATGGTTCCGTCGTGTAGCAGCCAGCAAAGACAAAGACGA
EV544927       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FD544867       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FD985165       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FD969762       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FD960567       <-- CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> CATCTAGTCACATGGTTCCGTCGTGTG.......................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
EX764779       --> CATCTAGTCACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA
EX887650       --> CATCTAGTGACATGGTTCCGTCGTGTGGCAGCAAGCAAAGACAAAGACGA

               1051   -   1101
UN17710        --> GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
FD977735       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
EX891752       <-- GAACGCCTTCAAAAACGCAATAGACCCGAACATCAAGCTGGACGAAGACA
EX768631       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
EX900480       <-- GAACGCCTTCAAAAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
EV544927       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
FD544867       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
FD985165       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGTCA
FD969762       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
FD960567       <-- GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGTCA
EX764779       --> GAACGCCTTCAAGAACGCAATAGACCCAAACATCAAGCTGGACGAAGACA
EX887650       --> GAACGCCTTCAAAAACGCAATAGACCCGAACATCAAGCTGGACGAAGACA

               1101   -   1151
UN17710        --> CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FD977735       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EX891752       <-- CCTTAGCTAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EX768631       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EX900480       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EV544927       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FD544867       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FD985165       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FD969762       <-- CCTTAGCTAGTGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FD960567       <-- CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
FY428956       <-- ..................................................
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EX764779       --> CCTTAGCCAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA
EX887650       --> CCTTAGCTAGCGTTGAAAAAGTTTGGGAGCTTGCTGGTCATTGCTGTGCA

               1151   -   1201
UN17710        --> CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FD977735       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
EX891752       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTACTTTC
EX768631       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
EX900480       <-- CGTGAGCCCTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
EV544927       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FD544867       <-- CGTGAGTCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FD985165       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FD969762       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FD960567       <-- CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
FY428956       <-- ........................ATGTCTCACATCGTTAACGTTCTTTC
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
EX764779       --> CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTTCTTTC
EX887650       --> CGTGAGCCTTACCAAAGACCTGACATGTCTCACATCGTTAACGTACTTTC

               1201   -   1251
UN17710        --> TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FD977735       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EX891752       <-- TTCTCTCACTGTCCAATGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EX768631       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EX900480       <-- TTCTCTCACTGTCCAATGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EV544927       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FD544867       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FD985165       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FD969762       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FD960567       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
FY428956       <-- TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> TTCGCTCACTGTCCAGTGGAAACCCACTGAG-TCGATCCTGATGAC-TTT
EX764779       --> TTCGCTCACTGTCCAGTGGAAACCCACTGAGGTCGATCCTGATGACCTTT
EX887650       --> TTCTCTCACTGTCCAATGGAAACCCACTGAGGTCGATCCTGATGACCTTT

               1251   -   1301
UN17710        --> ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
FD977735       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
EX891752       <-- ACGGTATAGACTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
EX768631       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
EX900480       <-- ACGGTATAGACTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
EV544927       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
FD544867       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAG--ATGGCAA
FD985165       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
FD969762       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
FD960567       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAGTGGCAA
FY428956       <-- ACGGTATAGATTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ACG-TATAGATTATGAT.................................
EX764779       --> ACG-TATAGATTATGATCTTC.............................
EX887650       --> ACGGTATAGACTATGATCTTCCGCTTCCGCAGGCGGTTAAGAAATGGCAA

               1301   -   1351
UN17710        --> GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- GCTTTTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
FD977735       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
EX891752       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCCTCCTC
EX768631       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
EX900480       <-- GCTTCTGAAGGGCTTAGCCAAACAGGAGCTGACTCTGGTTTTTCGTCCTC
EV544927       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
FD544867       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
FD985165       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCGTCCTC
FD969762       <-- GCTTTTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCCTCCTC
FD960567       <-- GCTTTTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTTTTCGTCCTC
FY428956       <-- GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCCTCGTCCTC
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> GCTTCTGAAGGGCTTAGCCAAACGGGAGATGACTCTGGTTCTTCCTCCTC

               1351   -   1401
UN17710        --> TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977735       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX891752       <-- TGTTTATGGAAGCAAAGATAATACACAGACAAGTATCCCAACACGCCCGT  Raphanus sativus var. oleiformis
EX768631       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX900480       <-- TTTTTATGGAAGCAAAGACAATACACAGACAAGTATCCCAACACGCCCGT  Raphanus sativus cv Early Scarlet Globe
EV544927       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD544867       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD985165       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. landra
FD969762       <-- TGTTTATGGAAGCAAAGATAATACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD960567       <-- TGTTTATGGAAGCAAAGATAACACACAGACAAGTATCCCAACACGCCCGT  Raphanus raphanistrum subsp. maritimus
FY428956       <-- TGTTTATGGAAGCAAAGATAATACACAGACAAGTATCCCAACACGCCCGT  Raphanus sativus cv GSK3-1
EV549457       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV550201       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD548721       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD964610       --> ..................................................  Raphanus raphanistrum subsp. maritimus
FD989377       --> ..................................................  Raphanus raphanistrum subsp. landra
EX764779       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX887650       --> TGTTTATGGAAGCAAAGATAATACACAGACAAGTATCCCAACACGCCCGT  Raphanus sativus var. oleiformis

               1401   -   1451
UN17710        --> CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
FD977735       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
EX891752       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
EX768631       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
EX900480       <-- CTGGATTTGCTGACTCGTTCACTTCTGTGGATGGACGTTGAAGAAAATAA
EV544927       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
FD544867       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
FD985165       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
FD969762       <-- CTGGATTTGCTGACTCGTTCACTTCTGTGGATGGACGTTGAATAAAATAA
FD960567       <-- CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAAATAA
FY428956       <-- CTGGATTTGCTGACTCGTTCACTTCTGTGGATGGACGTTGAAGAAAATAA
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> CTGGATTTGCTGACTCGTTCACATCTGTGGATGGACGTTGAAGAAA-TAA

               1451   -   1501
UN17710        --> AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FD977735       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
EX891752       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
EX768631       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
EX900480       <-- AAGTCT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
EV544927       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FD544867       <-- AAGACT-GCGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FD985165       <-- AAGACT-GCGTTTTTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FD969762       <-- AAGACT-GCGTTTTTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FD960567       <-- AAGACT-GCGTTTTTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
FY428956       <-- AAGACTTACGTTTCTCAGTTTCGTTAAAAACGTTTTTAGTAGTATAGAAG
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> AAGACT-GCGTTTCTCAGTTTCGTTAAAA-CGTTTTTAGTAGTATAGAAG

               1501   -   1551
UN17710        --> TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FD977735       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTC.
EX891752       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAAAGTTCCTATTTTCTTGTTCT
EX768631       <-- TAGTAGATGAGGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
EX900480       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
EV544927       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FD544867       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FD985165       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FD969762       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FD960567       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
FY428956       <-- TAGTAGATGAAGAATCCTTGTGTGAAAAAA-GTTCCTATTTTCTTGTTCT
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> TAGTAGATGAA.......................................

               1551   -   1601
UN17710        --> TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
FD977735       <-- ..................................................
EX891752       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCCATTTTTCATGAAAACT
EX768631       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
EX900480       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
EV544927       <-- TTGTTTTTGTCTGAAGCATTTA............................
FD544867       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
FD985165       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
FD969762       <-- TTGTTTTTGTTTGAAGCATTTACCTGTGACATCTATTTTTCATGAAAACT
FD960567       <-- TTGTTTTTGTTTGAAGCATTTA............................
FY428956       <-- TTGTTTTTGTCTGAAGCATTTACTTGTGACATCTATTTTTCATGAAAACT
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               1601   -   1651
UN17710        --> TTTGGTTTAAGTGTACTCTATCGTTGTAGTGTTTATGCAAACATAAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- TTTGGTTTAAGTGTAg..................................
FD977735       <-- ..................................................
EX891752       <-- TTTGGTTTAAGTGTAaaaaaa.............................
EX768631       <-- TTTGGTTTAAGTGTACTCCATCGTTGTAGTGTCTATGCAAACATAAAGTA
EX900480       <-- TTTGGTTTAAGTGTACTCTATCGTTGTAGTGTTTATGCAAACATAAAGTA
EV544927       <-- ..................................................
FD544867       <-- TTTGGTTTAAGTGc....................................
FD985165       <-- TTTGGTTTAAGTGc....................................
FD969762       <-- TTTGGTTTAAGTGTACTCTATCGTTGTAGTGTTTATGCAAACATAAAGTA
FD960567       <-- ..................................................
FY428956       <-- TTTGGTTTAAGTt.....................................
EV549457       --> ..................................................
EV550201       --> ..................................................
FD548721       --> ..................................................
FD964610       --> ..................................................
FD989377       --> ..................................................
EX764779       --> ..................................................
EX887650       --> ..................................................

               1651   -   1701
UN17710        --> TCTATACTATACATCTTGCATCTGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~
EV545529       <-- .........................
FD977735       <-- .........................
EX891752       <-- .........................
EX768631       <-- TCTATACc.................
EX900480       <-- TCTATACc.................
EV544927       <-- .........................
FD544867       <-- .........................
FD985165       <-- .........................
FD969762       <-- TCTATACTATACATCTTGCATCTGG
FD960567       <-- .........................
FY428956       <-- .........................
EV549457       --> .........................
EV550201       --> .........................
FD548721       --> .........................
FD964610       --> .........................
FD989377       --> .........................
EX764779       --> .........................
EX887650       --> .........................