Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17717

               1      -     51
UN17717        --> GGTTATAATAAGATTTCACTAGTAAAGATTCCAAAGTCAAGCAATCGTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- GGTTATAATAAGATTTCACTAGTAAAGATTCCAAAGTCAAGCAATCGTAT
EY916577       <-- ...........................ATTCCAAAGTCAAGCAATCGTAT
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> GGTTATAATAAGATTTCACTAGTAAAGATTCCAAAGTCAAGCAATCGTAT
EW719000       --> ..........................GATTCCAAAGTCAAGCAATCGTAT
FD546111       --> ..........................GATTCCAAAGTCAAGCAATCGTAT
FD977935       --> ..................................................

               51     -    101
UN17717        --> TATCAATAACCGAAAAAA-CATGAATCCAAACTTGACCGCATAGACAAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- TATCAATAACCGAAAAAAACATGAATCCAAACTTGACCGCATAGACAAAC
EY916577       <-- TATCAATAACCGAAAAAA-CATGAATCCAAACTTGACCGCATAGACAAAC
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> TATCAATAACCGAAAAAA-CATGAATCCAAACTTGACCGCATAGACAAAC
EW719000       --> TATCAATAACCGAAAAAA-CATGAATCCAAACTTGACCGCATAGACAAAC
FD546111       --> TATCAATAACCGAAAAAA-CATGAATCCAAACTTGACCGCATAGACAAAC
FD977935       --> .................................................C

               101    -    151
UN17717        --> CCCGAAAAACTGTACTTTTGGGGTCTCCCAATATCAATTATACACCCC-A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- CCCGAAAAACTGTACTTTTGGGGTTTCCCAATATCAATTATAAACCCC-A  Raphanus raphanistrum subsp. landra
EY916577       <-- CCCGAAAAACTGTACTTTTGGGGTCTCCCAATATCAATTATACACCCC-A  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722248       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722247       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982353       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550133       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535121       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574004       --> CCCGAAAAACTGTACTTTTGGGGTTTCCCAATATCAATTATAAACCCC-A  Raphanus raphanistrum subsp. landra
EW719000       --> CCCGAAAAACTGTACTTTTGGGGTCTCCCAATATCAATTATAAACCCCCA  Raphanus sativus var. oleiformis
FD546111       --> CCCGAAAAACTGTACTTTTGGGGTCTCCCAATATCAATTATACACCCC-G  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977935       --> CCCGAAAAACTGTACTTTTGGGGTCTCCCAATATCAATTATACACCCC-A  Raphanus raphanistrum subsp. raphanistrum (NY)

               151    -    201
UN17717        --> TAGTTAACACCAAACGATACGTTTTTT-GTTCTTGTTAGTCCTAGAAGTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- TAGTTAACACCAAACGATATGTTTTTTTGTTCTTGTTAGTCCTAGAAGTA
EY916577       <-- TAGTTAACACCAAACGATACGTTTTTT-GTTCTTGTTAGTCCTAGAAGTA
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> TAGTTAACACCAAACGATATGTTTTTTTGTTCTTGTTAGTCCTAGAAGTA
EW719000       --> TAGTTAACACCAAACGATAC-TTTTTT-GTTCTTGTTAGTCCTAGAAGTA
FD546111       --> TAGTTAACACCAAACGATACGTTTTTT-GTTCTTGTTAGTCCTAAAAGTA
FD977935       --> TAGTTAACACCAAACGATACGTTTTTT-GTTCTTGTTAGTCCTAAAAGTA

               201    -    251
UN17717        --> GTACTTAAAACTCGCGGAGCGTCTTGTCATAAAACCCGGGTATCCA---A
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- GTACTTAAAACTCGCGGAGCGTCTTGACATAAAAC--CGGTACCCATCAA  Raphanus raphanistrum subsp. landra
EY916577       <-- GTACTTAAAACTCGCGGAGCGTCTTGTCATAAAACCCGGGTATCCA---A  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722248       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
EW722247       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD982353       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550133       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535121       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574004       --> GTACTTAAAACTCGCGGAGCGTCTTGACATAAAACC--GGTACCCATCAA  Raphanus raphanistrum subsp. landra
EW719000       --> GTACTTAAAACTCGCGGAGCGTCTTGTCATAAAACCCGGGTATCCACCAA  Raphanus sativus var. oleiformis
FD546111       --> GTACTTAAAACTCGCGGAGCGTCTTGTCATAAAACCCGGGTATCCA---A  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977935       --> GTACTTAAAACTCGCGGAGCGTCTTGTCATAAAACCCGGGTATCCA---A  Raphanus raphanistrum subsp. raphanistrum (NY)

               251    -    301
UN17717        --> ATCAGAGTGAACCTTCTCCAGAAGATTTTTTCTTGCCCCAGCATTTTAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ATCAGAGTGAACCTTCTCCAGAAGATTTTTTCTTGCCCCAGCATTTTAGT
EY916577       <-- ATCAGAGTGAACCTTCTCCAGAAGATTTTTTCTTGCCCCAGCATTTTAGT
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> ATCAGAGTGAACCTTCTCCAGAAGATTTTTTCTTGCCCCAGCATTTTAGT
EW719000       --> ATCAGAGTGAACCTTCTCCAGAAGATTTTTTCTTGCCCCAGCACTTTAGT
FD546111       --> ATCAAAGTGAACCTTCTCCAGAAAATTTTTTCTTGCCCCAGCATTTTAGT
FD977935       --> ATCAGAGTGAACCTTCTCCAAAAAATTTTTTCTTGCCCCAGCATTTTAGT

               301    -    351
UN17717        --> TTGTTGCTGAGAGGAGTTTTTGACACCGGAATGAATTTCCCCACCAGAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- TTGTTGCTGAGAGGAGTTTTCGACACCGGAATGAATTTCCCAACCAGAGC
EY916577       <-- TTGTTGCTGAGAGGAGTTTTTGACACCGGAATGAATTTCCCCACCAGAGC
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> TTGTTGCTGAGAGGAGTTTTCGACACCGGAATGAATTTCCCAACCAGAGC
EW719000       --> TTGTTGCTGAGAGGAGTTTTTGACACCGGAATGAATTTTCCCACCAGAGC
FD546111       --> TTGTTGCTGAAAGGAGTTTTTGACACCGGAATGAATTTCCCCACCAAAGC
FD977935       --> TTGTTGCTGAGAGGAGTTTTTGACACCGGAATGAATTTCCC.........

               351    -    401
UN17717        --> AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
EY916577       <-- AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
EW722248       <-- ..............................ACATATTAGCCATTGTTGCC
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
EW719000       --> AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
FD546111       --> AAGAGGCCAACTGATCACACCGATGGCAACACATATTAGCCATTGTTGCC
FD977935       --> ..................................................

               401    -    451
UN17717        --> AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
EY916577       <-- AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
EW722248       <-- AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
EW722247       <-- ..............GTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
EW719000       --> AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGATA
FD546111       --> AGTTAAGTTTTGTCGTGGAAGCGAATTTGCCGAGGAACTCAACAATGACA
FD977935       --> ..................................................

               451    -    501
UN17717        --> ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
EY916577       <-- ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
EW722248       <-- ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
EW722247       <-- ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
EW719000       --> ACCTGGAGGACGAGAGTTATGACTATTATTCCCATGAAGAGACGATTCTT
FD546111       --> ACCTGGAGGACGAAAGTTATGACTATTATTCCCATGA.............
FD977935       --> ..................................................

               501    -    551
UN17717        --> GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
EY916577       <-- GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
EW722248       <-- GATAACGCCTTTGAAAGATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
EW722247       <-- GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
FD982353       <-- ...............................TGGTTTTCGAGCATTGAAC
FD550133       <-- ..................................................
EV535121       <-- ..................................................
EV574004       --> GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
EW719000       --> GATAACGCCTTTGAA-GATGTTCTTCTCGTCTGGTTTTCGAGCATTGAAC
FD546111       --> ..................................................
FD977935       --> ..................................................

               551    -    601
UN17717        --> TCGTTGAAGGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- TCGTTGAAAGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
EY916577       <-- TCGTTGAAGGC.......................................
EW722248       <-- TCGTTGAAGGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
EW722247       <-- TCGTTGAAGGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
FD982353       <-- TCGTTGAAGGCTTGGCAGAGCACGAAGGCGT-GAAAATTATTGTGTTCTT
FD550133       <-- ...........................................TGTTCTT
EV535121       <-- ..................................................
EV574004       --> TCGTTGAAAGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
EW719000       --> TCGTTGAATGCTTGGCAGAGCACGAAGGCGTTGAAAATTATTGTGTTCTT
FD546111       --> ..................................................
FD977935       --> ..................................................

               601    -    651
UN17717        --> CACTCTGGTGGCATGTGTGGGAACTTCATGCTCGAGGCCAAGTATGCTTA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- CACTCTGGTGGCATGTGTAGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus raphanistrum subsp. landra
EY916577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722248       <-- CACTCTGGTGGCATGTGTGGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus sativus cv Early Scarlet Globe
EW722247       <-- CACTCTGGTGGCATGTGTGGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus sativus cv Early Scarlet Globe
FD982353       <-- CACTCTGGTGGCATGTGTGGGAACTTCATGCTCGAGGCCAAGTATGTTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550133       <-- CACTCTGGTGGCATGTGTGGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535121       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574004       --> CACTCTGGTGGCATGTGTAGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus raphanistrum subsp. landra
EW719000       --> CACTCTGGTGGCATGTGTAGGAACTTCATGCTCGAGGCCAAGTATGCTTA  Raphanus sativus var. oleiformis
FD546111       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977935       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               651    -    701
UN17717        --> TGCCCCGGAAATTGAGAACCAGCAGTACAATCACTTGATAGATAGCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- TCCCTCGGAAATTGAGAACCAGTAATACACTCACTTGATAGATAGCCTGA  Raphanus raphanistrum subsp. landra
EY916577       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EW722248       <-- TGCCCCGGAAATTGAGAACCAGCAGTACAATCACTTGATAGATAGCCTGA  Raphanus sativus cv Early Scarlet Globe
EW722247       <-- TGCCCCGGAAATTGAGAACCAGCAGTACAATCACTTGATAGATAGCCTGA  Raphanus sativus cv Early Scarlet Globe
FD982353       <-- TGCCTCGGAAATTGAGAACCAGCAGTACAATCACTTGATAGATAGCGTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD550133       <-- TGCCTCGGAAATTGAGAACCAGCAGTACAATCACTTGATAGATAGCCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV535121       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574004       --> TCCCTCGGAAATTGAGAACCAGTAATACACTCACTTGATAGATAGCCTGA  Raphanus raphanistrum subsp. landra
EW719000       --> TCCCTCGGAAATTGAGAACCAGTAATACACTCACTTGATAGATAGCCTGA  Raphanus sativus var. oleiformis
FD546111       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD977935       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)

               701    -    751
UN17717        --> ATCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTTCTGCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ATCc..............................................
EY916577       <-- ..................................................
EW722248       <-- ATCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTTCTGCC
EW722247       <-- ATCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTTCTGCC
FD982353       <-- CTCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTTCTGCC
FD550133       <-- ATCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTCCTGCC
EV535121       <-- ATCAACAGGTTTCTCCACATGATGTTGGTAATAAGAGGCTCCTTTCTGCC
EV574004       --> ATCc..............................................
EW719000       --> ATCAACAGGTTTCTCCACATGATGTTGGTGATAAGAGGCTCCTTTCTGCC
FD546111       --> ..................................................
FD977935       --> ..................................................

               751    -    801
UN17717        --> CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGCTAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGATAAAG
EW722247       <-- CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGATAAAG
FD982353       <-- CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGCTAAAG
FD550133       <-- CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGCTAAAG
EV535121       <-- CACAGGAGGTCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGCTAAAG
EV574004       --> ..................................................
EW719000       --> CACGGGAGGCCTTCCCATGAGGTGATCAGTAGGTGGTTCAGTAGCTAAAG
FD546111       --> ..................................................
FD977935       --> ..................................................

               801    -    851
UN17717        --> CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
EW722247       <-- CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
FD982353       <-- CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
FD550133       <-- CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
EV535121       <-- CCAACGCTCCGAGAGTGTCCATAATCAGATTAACCCACAGAAGCTGCACA
EV574004       --> ..................................................
EW719000       --> CCAATGCTCCGAGAGTGTCCc.............................
FD546111       --> ..................................................
FD977935       --> ..................................................

               851    -    901
UN17717        --> GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
EW722247       <-- GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
FD982353       <-- GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
FD550133       <-- GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
EV535121       <-- GCGGTAAGTGGAACGTCACCGCTTGAAATAGCAGCTACGACGTTAATGAC
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               901    -    951
UN17717        --> AAGAGCGGCAACATTGACTGTGAGCTGGAACTGGATGAATTTCTGAATGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- AAGAGCGGCAACATTGACTGTGAGCTGGAACTGGATGAATTTCTGAATGT
EW722247       <-- AAGAGCGGCAACATTGACTGTGAGCTGGAACTGGATGAATTTCTGAATGT
FD982353       <-- AAGAGCGGCAACATTGACTGTGAGCTGGAACTGGATGAATTTCTGAATGT
FD550133       <-- AAGAGCGGCAACATTGACTGTGAGCTGGAACTGGATGAATTTCTGAATGT
EV535121       <-- AAGAGCGGCAACATTGACGGTTAGCTGGAACTGGATGAATTTCTGAATGT
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               951    -   1001
UN17717        --> TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
EW722247       <-- TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
FD982353       <-- TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
FD550133       <-- TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
EV535121       <-- TGGCGTACACTGATCGTCCCCAGCGAACAACCTTGACAACTGAAGCAAAG
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1001   -   1051
UN17717        --> TTATCATCCAAGATAATGATGTCCGAACTTTCCTTAGCAACTTCTGTTCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- TTATCATCCAAGATAATGATGTCCGAACTTTCCTTAGCAACTTCTGTTCC
EW722247       <-- TTATCATCCAAGATAATGATGTCCGAACTTTCCTTAGCAACTTCTGTTCC
FD982353       <-- TTATCATCCAAGATAATGATGTCCGAACTTTCCTTAGCAACTTCTGTTCC
FD550133       <-- TTATCATCCAAGATAATGATGTCCGGACTTTCCTTAGCAACTTCTGTTCC
EV535121       <-- TTATCATCCAAGATAATGATGTCCGAACTTTCCTTAGCAACTTCTGTTCC
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1051   -   1101
UN17717        --> TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
EW722247       <-- TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
FD982353       <-- TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
FD550133       <-- TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
EV535121       <-- TGCTATTCCCATAGCAAGACCAATATCGGCCTCGTGGAGTGCGGGAGCGT
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1101   -   1151
UN17717        --> CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCTAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCTAAGC
EW722247       <-- CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCTAAGC
FD982353       <-- CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCT....
FD550133       <-- CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCTAAGC
EV535121       <-- CATTTGTCCCATCTCCAGTCACAGCAACAACATGCCCACGTCTTCTAAGC
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1151   -   1201
UN17717        --> GATTGTACCAGCAGAAGCTTGTCATTGGGAGATGAGCGGCCCATAACCGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- GATTGTACCAGCAGAAGCTTGTCATTGGGAGATGAGCGGCCCATAACCGA
EW722247       <-- GATTGTACCAGCAGAAGCTTGTCATTGGGAGATGAGCGGCCCATAACCGA
FD982353       <-- ..................................................
FD550133       <-- GATTGTACCAGCAGAAGCTc..............................
EV535121       <-- GATTGTACCAGCAGAAGCTTGTCATTGGGAGATGAGCGGCCCATAACCGA
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1201   -   1251
UN17717        --> TATTTTGTCACTAATCTTGTCCCTTTCTGCCTCAGTCAAGGCGCGGAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- TATTTTGTCACTAATCTTGTCCCTTTCTGCC...................
EW722247       <-- TATTTTGTCACTAATCTTGTCCCTTTCTGCC...................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- TATTTTGCCACTAATCTTGTCCCTTTCTGCATCAGTCAAGGCGCGGAATG
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1251   -   1301
UN17717        --> ATTTTCCTTCAATGAGAGTAGGCTCGGAGGCATCAGCATCTGACGTTAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ATTTTCCTTCAATGAGAGTAGGCTCGGAGGCATCAGCATCTGACGTTAAT
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1301   -   1351
UN17717        --> ATTCCACACTCCAAAGCAATAGCCCTGGCAGTTTGGACGTTGTCACCAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- ATTCCACACTCCAAAGCAATAGCCCTGGCAGTTTGGACGTTGTCACCAGT
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1351   -   1401
UN17717        --> GACCATACGGACCTTGACACCAGCGTTCTGACACAACTGAACTGAATCTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- GACCATACGGACCTTGACACCAGCGTTCTGACACAACTGAACTGAATCTT
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1401   -   1451
UN17717        --> TAACTCCTGGTCTGCATGGATCCTTTATGCCTACTATAGCTAGCAAAATA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV569466       <-- ..................................................
EY916577       <-- ..................................................
EW722248       <-- ..................................................
EW722247       <-- ..................................................
FD982353       <-- ..................................................
FD550133       <-- ..................................................
EV535121       <-- TAACTCCTGGTCTGCATGGATCCTTTATGCCTACTATAGCTAGCAAAATA
EV574004       --> ..................................................
EW719000       --> ..................................................
FD546111       --> ..................................................
FD977935       --> ..................................................

               1451   -   1501
UN17717        --> AGGTCGTCTC
                   ~~~~~~~~~~
EV569466       <-- ..........
EY916577       <-- ..........
EW722248       <-- ..........
EW722247       <-- ..........
FD982353       <-- ..........
FD550133       <-- ..........
EV535121       <-- AGGTCGTCTC
EV574004       --> ..........
EW719000       --> ..........
FD546111       --> ..........
FD977935       --> ..........