Library    |     Search    |     Batch query    |     SNP    |     SSR  

Alignment for radish unigene UN17735

               1      -     51
UN17735        --> GGAATCGTCTTCACCAAACCTTAGGATAACTTGAAACAAGAAAACGGCGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> GGAATCGTCTTCACCAAACCTTAGGATAACTTGAAACAAGAAAACGGCGT
EX897048       --> .......ggaccaaacttcaggAGGATAACTTGAAACAAGAAAACGGCGT
EY916148       --> ....................ggAGGATAACTTGAAACAAGAAAACGGCGT
FD569180       --> .................ggaggAGGATAACTTGAAACAAGAAAACGGCGT
FY434326       --> ..................................................
EV570420       --> ..................................................
EY906285       --> ..................................................
EY922846       --> ..................................................

               51     -    101
UN17735        --> CGGTTAGACCGACGGAGGAGGAACCATGTCGTCGTCTCTTCTTCTCTCTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> CGGTTAGACCGACGGAGGAGGAACCATGTCGTCGTCTCTTCTTCTCTCTG
EX897048       --> CGGTTAGACCGACGGAAGAGGAACCATGTCGTCGTCTCTTCTTCTCTCTG
EY916148       --> CGGTTAGACCGACGGAGGAGGAACCATGTCGTCGTCTCTTCTTCTCTCTG
FD569180       --> CGGTTAGACCGACGGAAGAGGAACCATGTCGTCGTCTCTTCTTCTCTCTG
FY434326       --> .........................ATGTCGTCGTCTCTTCTTCTCTCTG
EV570420       --> ..................................................
EY906285       --> ..................................................
EY922846       --> ..................................................

               101    -    151
UN17735        --> GCTCTACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTCTCATCAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> GCTCTACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTCTCATCAAAG
EX897048       --> GCTCTACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTGTCATCAAAG
EY916148       --> GCTCTACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTCTCATCAAAG
FD569180       --> GCTCTACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTGTCATCAAAG
FY434326       --> GCTCCACAGTATCTTCTCCCCTCATCGCTCCATCAAAGCTCTCATCAAAG
EV570420       --> ..................................................
EY906285       --> ..................................................
EY922846       --> ..................................................

               151    -    201
UN17735        --> CTTTCTCTCTTACGGAATCAAAATCAATCACTGTCACTACCTCGGAGAAC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> CTTTCTCTCTTACGAAATCAAAATCAATCACTGTCACTACCTCGGAGAAC
EX897048       --> CTTTCTCTCTTACGGAATCAAAATCAATCACTGTCACTACCTCGGAGAAC
EY916148       --> CTTTCTCTCTTACGGAATCAAAATCAATCACTGTCACTACCTCGGAGAAC
FD569180       --> CTTTCTCTCTTACGGAATCAAAATCAATCACTG.................
FY434326       --> CTTTCTCTCTTACGGAATCAAAATCAATCACTGTCACTACCTCGGAGAAC
EV570420       --> ..................................................
EY906285       --> ..................................................
EY922846       --> ..................................................

               201    -    251
UN17735        --> CTTCAAAGCCCCTAGGTGCTCCTCCTCCTCCTCCGCTGATTCTCCCTACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> CTTCAAAGCCCCTAGGTGCTCCTCCTCC------GCTGATTCTCCCTACG
EX897048       --> CTTCAAAGCCCCTAGGTGCTCCTCCTCCTCCTCCGCTGATTCTCCCTACG
EY916148       --> CTTCAAAGCCCCTAGGTGCTCCTCCTCCTCC---GCTGATTCTCCCTACG
FD569180       --> ..................................................
FY434326       --> CTTCAAAGCCCCTAGGTGCTCCTCCTCCTCCTCCGCTGATTCTCCTTACG
EV570420       --> ..................................................
EY906285       --> ..................................................
EY922846       --> ..................................................

               251    -    301
UN17735        --> GAGGCAACGT-CCC-A-CGTTCCCTCGGACCAGAGTCTGGGACCCGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> GAGGCAACGT-CCC-AACGTTCCCTCGGACCAGAGTCTGGGACCCGTACA
EX897048       --> GAGGCAACGT-CCC-AACGTTCCCTCGGACCAGAGTCTGGGACCCGTGCA
EY916148       --> GAGGCAACGT-CCCCA-CGTTCCCTCGGACCAGAGTCTGGGACCCGTACA
FD569180       --> ..................................................
FY434326       --> GAGGCAACGTGCCC-A-CGTTCCCTCGGACCAGAGTCTGGGACCCTTACA
EV570420       --> .....................................gGGGACCCATACA
EY906285       --> ..................................................
EY922846       --> ..................................................

               301    -    351
UN17735        --> AGCGCCTAGGGATCAGCCCCTACGCTTCCGAGGAAGAGATCTGGGCCTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ..................................................
EV574710       <-- ..................................................
EW731121       --> AGCGCCTAGGGATCAGCCCCTACGCTTCGGAGGAAGAGATCTGGGCCTCT
EX897048       --> A.................................................
EY916148       --> AGCGCCTAGGGATCAGCCCCTACGCTTCCGAGGAAGAGATCTGGGCCTCT
FD569180       --> ..................................................
FY434326       --> AGCGCCTAGGGATCAGCCCCTACGCCTCCGAGGAAGAGATCTGGGCCTCG
EV570420       --> AGCGCCTAGGGATCAGCCCCTACGCTTCCGAGGAAGAGATCTGGGCCTCT
EY906285       --> ..................................................
EY922846       --> ..................................................

               351    -    401
UN17735        --> CGCAACTTCCTCTTGGAGCAGTACGCCGACCACGAGAGGAGCCGGGAGTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- ......................gCGCCGACCACGAGAGAAGCCGGGAGTC
EV574710       <-- ..................................................
EW731121       --> CGCAACTTCCTCTTGGAGCAGTACGCTGACCACGAGAGGAGCCGGGAGTC
EX897048       --> ..................................................
EY916148       --> CGCAACTTCCTCTTGGAGCAGTACGCTGACCACGAGAGGAGCCGAGAGTC
FD569180       --> ..................................................
FY434326       --> CGCAACTTTCTCTTGGAGCAGTACGCCGACCACGAGAGGAGCCGGGAGTC
EV570420       --> CGCAACTTCCTCTTAGAGCAGTACGCCGGCCACGAGAGGAGCCGGGAGTC
EY906285       --> ......................gCGCCGACCACGAGAGAAGCCGGGAGTC
EY922846       --> ..................................................

               401    -    451
UN17735        --> TATAGAGGGCGCCTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- TATAGAGGGCGCCTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
EV574710       <-- .........................................TGGCGAGGA
EW731121       --> TATAGAGGGGGCCTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
EX897048       --> ..................................................
EY916148       --> TATAGAGGGAGCATTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
FD569180       --> ..................................................
FY434326       --> TATCGAGGGGGCCTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
EV570420       --> TATAGAGGGCGCGTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
EY906285       --> TATAGAGGGCGCCTTCGAGAAGCTTCTCATGTCTAGTTTCGTGGCGAGGA
EY922846       --> ..................................................

               451    -    501
UN17735        --> AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EV574710       <-- AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EW731121       --> AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EX897048       --> ..................................................
EY916148       --> AGAAGACTAAGATCAACCTCAAGACGAGGCTGAAGAAGAGAGTCGAGGAG
FD569180       --> ..................................................
FY434326       --> AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EV570420       --> AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EY906285       --> AGAAGACTAAGATCAACCTCAAGACGAGGTTGAAGAAGAGAGTCGAGGAG
EY922846       --> ..................................................

               501    -    551
UN17735        --> TCTCCTCCGTGGCTCAAGGCTCTTTTTGATTTCGTTGAGATGCCTCCGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- TCTCCTCCGTGGCTCAAGGCTCTTTTTGATTTCGTTGAGATGCCTCCGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574710       <-- TCTCCTCCTTGGCTCAAGGCGCTTTTCGATTTCGTTGAGATGCCTCCGAT  Raphanus raphanistrum subsp. landra
EW731121       --> TCTCCTCCGTGGCTCAAGGCTCTTTTTGATTTCGTCGAGATGCCTCCGAT  Raphanus sativus cv Rat-Tail Radish #3870
EX897048       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY916148       --> TCTCCTCCGTGGCTCAAGGCTCTTTTCGATTTCGTTGAGATGCCTCCGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569180       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY434326       --> TCTCCTCCGTGGCTCAAGGCTCTTTTTGATTTCGTCGAGATGCCTCCGAT  Raphanus sativus cv GSK3-1
EV570420       --> TCTCCTCCTTGGCTCAAGGCGCTTTTCGATTTCGTTGAGATGCCTCCGAT  Raphanus raphanistrum subsp. landra
EY906285       --> TCTCCTCCGTGGCTCAAGGCTCTTTTTGATTTCGTTGAGATGCCTCCGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY922846       --> ..................................................  Raphanus raphanistrum subsp. landra

               551    -    601
UN17735        --> GGATACTGTGTTCAGAAGGCTGTTCCTTTTTGCCTTCATGGGTGGTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- GGATACTGTGTTCAGAAGGCTGTTCCTTTTTGCCTTCATGGGTGGTTGGA
EV574710       <-- GGATACTGTGTTCAGAAGGCTGTTTCTTTTTGCCTTCATGGGTGGTTGGA
EW731121       --> GGATACTGTGTTCAGAAGGCTCTTCCTTTTTGCTTTCATGGGTGGTTGGA
EX897048       --> ..................................................
EY916148       --> GGATACTGTGTTTAGAAGGCTCTTCCTTTTTGCCTTCATGGGTGGTTGGA
FD569180       --> ..................................................
FY434326       --> GGATACTGTGTTCAGAAGGCTCTTCCTTTTTGCCTTCATGGGTGGTTGGA
EV570420       --> GGATACTGTGTTCAGAAGGCTGTTTCTTTTTGCCTTCATGGGTGGTTGGA
EY906285       --> GGATACTGTGTTCAGAAGGCTGTTCCTTTTTGCCTTCATGGGTGGTTGGA
EY922846       --> ..................................................

               601    -    651
UN17735        --> GTATCATGAACTCAGCTGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- GTATCATGAACTCAGCTGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV574710       <-- GTATCATGAACTCTGCAGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCT  Raphanus raphanistrum subsp. landra
EW731121       --> GTATCATGAACTCAGCTGAAGGCGGTCCTGCttt................  Raphanus sativus cv Rat-Tail Radish #3870
EX897048       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EY916148       --> GTATCATGAACTCAGCTGAAGGCGGTCCTGCCTT................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD569180       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
FY434326       --> GTATCATGAACTCAGCTGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCG  Raphanus sativus cv GSK3-1
EV570420       --> GTATCATGAACTCTGCAGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCT  Raphanus raphanistrum subsp. landra
EY906285       --> GTATCATGAACTCAGCTGAAGGCGGTCCTGCCTTTCAGGTGGCGGTGTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY922846       --> ..................................gCAGGTGGCGGTGTCT  Raphanus raphanistrum subsp. landra

               651    -    701
UN17735        --> TTGGCTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- TTGGTTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
EV574710       <-- TTGGCTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> TTGGCTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
EV570420       --> TTGGCTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
EY906285       --> TTGGTTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG
EY922846       --> TTGGCTGCTTGCGTATATTTCCTGAATGAGAAGACAAAGAGCTTGGGGAG

               701    -    751
UN17735        --> AGCTTTCTTAATCGGGTTTGGTGCATTAGCGGCTGGATGGTTCTGCGGTT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- AGCTTTCTTAATCGGGTTTGGTGCGTTAGCGGCTGGATGGTTTTGCGGTT
EV574710       <-- AGCTTTCTTAATCGGGTTTGGTGCATTAGCGGCTGGATGGTTCTGCGGTT
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> AGCTTTCTTAATCGGGTTTGGTGCATTAGCGGCTGGATGGTTCTGCGGTT
EV570420       --> AGCTTTCTTAATCGGGTTTGGTGCATTAGCGGCTGGATGGTTCTGCGGTT
EY906285       --> AGCTTTCTTAATCGGGTTTGGTGCGTTAGCGGCTGGATGGTTCTGCGGTT
EY922846       --> AGCTTTCTTAATCGGGTTTGGTGCATTAGCGGCTGGATGGTTCTGCGGTT

               751    -    801
UN17735        --> CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCATGGACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCATGGACA
EV574710       <-- CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCAAGGACA
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCATGGACA
EV570420       --> CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCATGGACA
EY906285       --> CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCGGCATGGACA
EY922846       --> CGCTAGTCATTCCCATGATTCCGACTGTTTTGATTAACCCTGCATGGACA

               801    -    851
UN17735        --> CTGGAGCTCCTAACGTCACTGGTTGCTTATGTGTTTTTGTTTCTTTCTTG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- CTGGAGCTCCTAACGTCACTGGTTGCTTATGCGTTTTTGTTTCTTTCTTG
EV574710       <-- CTGGAGCTCCTAACGT..................................
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> CTGGAGCTCCTAACGTCACTGGTTGCTTATGTGTTTTTGTTTCTTTCTTG
EV570420       --> CTGGAGCTCCTAACGTCACTGGTTGCTTATGTGTTTTTGTTTCTTTCTTG
EY906285       --> CTGGAGCTCCTAACGTCACTGGTTGCTTATGCGTTTTTGTTTCTTTCTTG
EY922846       --> CTGGAGCTCCTAACGTCATTGGTTGCTTATGTGTTTTTGTTTCTTTCTTG

               851    -    901
UN17735        --> TACTTTCCTCAAGTAGAGTTGCTTTTTTTGTTTCTTTCTTGTACCTGATC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- TACTTTCCTCAAGTAGAGTTGCTTTTTTTGTTTCTTTCTTGTACCTGATC
EV574710       <-- ..................................................
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> TACTTTCCTCAAGTAGAGTTGCTTTTT.......................
EV570420       --> TACTTTCCTCAAGTAGAGTTGCTTTTTTTGTTTCTTTCTTGTACCTGATC
EY906285       --> TACTTTCCTCAAGTAGAGTTGCTTTTTTTGTTTCTTTCTTGTACCTGATC
EY922846       --> TACTTTCCTCAAGTAGAGTTGCTTTTTTTGTTTCTTTCTTGTACCTGATC

               901    -    951
UN17735        --> TCGCCGGAAAATTGAACTTAAGTTCCATAACATTGGCTGGCTCTGTTAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- TCGCCGGAAAATTGAACTTAAGTTCCATAACATTGGCTGGCTCTGTTAAA
EV574710       <-- ..................................................
EW731121       --> ..................................................
EX897048       --> ..................................................
EY916148       --> ..................................................
FD569180       --> ..................................................
FY434326       --> ..................................................
EV570420       --> TCGCCGGAAAATTGAACTTAAGTTCCATAACATTGGCTGGCTCTGTTAAA
EY906285       --> TCGCCGGAAAATTGAACTTAAGTTCCATAACATTGGCTGGCTCTGTTAAA
EY922846       --> TCGTCGGAAAATTGAACTTAAGTTCCATAACATTGGCTGGCTCTGTTAAA

               951    -   1001
UN17735        --> GTGTGGAATCAAGTTGATGAGAATCTTTTGCCC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EY902501       <-- GTGTGGAATCAAGTTGAgg..............
EV574710       <-- .................................
EW731121       --> .................................
EX897048       --> .................................
EY916148       --> .................................
FD569180       --> .................................
FY434326       --> .................................
EV570420       --> GTGTGGAATCAAGTTGATGAGAATCTTTTGCCC
EY906285       --> GTGTGGAATCAAGTTGAgg..............
EY922846       --> GTGTGGAA.........................