1      -     51
UN17795        --> GGAAATCAGTAGAAGAAAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- GGAAATCAGTAGAAGAAAAAAGATCTCGAAAAAA--GCTTAGGAAGAAAG
EV540614       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV541375       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV541458       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EX760492       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EX761131       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EX767729       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD537594       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD538266       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD553097       <-- ...............gcAAAAGATCTCAAAAAAAAAGCTTAGGAAGAAAG
FD967228       <-- ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EY909301       <-- ..................................................
FD537706       <-- ..................................................
EV539653       <-- ..................................................
FD975177       <-- ..................................................
FD536580       --> GGAAATCAGTAGAAGAAAAAAGATCTCGAAAAAA--GCTTAGGAAGAAAG
EV536088       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV537064       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV537160       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV551094       --> ...............gcAAAAGATCTCAAAAAAA--GCTTAGGAAGAAAG
EX756748       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EX757580       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EX763674       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EY907986       --> ...............gcAAAAGATCTCAAAAAAAAAGCTTAGGAAGAAAG
EY912982       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD541276       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD541423       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD542127       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD556873       --> ...............gcAAAAGATCTCAAAAAAAAAGCTTAGGAAGAAAG
FD970428       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD970992       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
FD979051       --> ...............gcAAAAGATCTCAAAAAAAA-GCTTAGGAAGAAAG
EV538668       --> .............................................GAAAG

               51     -    101
UN17795        --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV540614       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV541375       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV541458       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX760492       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX761131       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX767729       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD537594       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD538266       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD553097       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD967228       <-- AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EY909301       <-- ...........................................AAGGAAG
FD537706       <-- ...............................................AAG
EV539653       <-- ..................................................
FD975177       <-- ..................................................
FD536580       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV536088       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV537064       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV537160       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV551094       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX756748       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX757580       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EX763674       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EY907986       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EY912982       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD541276       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD541423       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD542127       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD556873       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD970428       --> AAAAATGGCGGATCAACTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD970992       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
FD979051       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG
EV538668       --> AAAAATGGCGGATCAGCTGACCGATGACCAGATCTCAGAGTTCAAGGAAG

               101    -    151
UN17795        --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. maritimus
EV540614       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- CCTTTAGCCTCTTCGATAAGGGTGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. landra
FD967228       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- CCTTTAGCCTCTTCGATAATGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- ..........................GATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. maritimus
EV536088       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> CCTTTAGCCTCTTCGATAAGGGTGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> CCTTTAGCCTCTTCGATAATGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. landra
FD970428       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACCAAGGAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> CCTTTAGCCTCTTCGATAAGGATGGAGATGGTTGCATCACCACGAAGGAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               151    -    201
UN17795        --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- CTCGGGACCGTGATGAGGTCTCTGGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. maritimus
EV540614       <-- CTTGGGACCGTGATGAGGTCTTTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- CTTGGGACCGTGATGAGGTCTTTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- CTTGGGACCGTGATGAGGTCTTTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- CTTGGGACCGTGATGAGGTCTTTAGGGCAAAATCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGC-GAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. landra
FD967228       <-- CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- CTTGGGACCGTGATGAGGTCTTTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- .........................GGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> CTCGGGACCGTGATGAGGTCTCTGGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. maritimus
EV536088       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAATCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAATCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGC-GAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. landra
FD970428       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> CTCGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> CTTGGGACCGTGATGAGGTCTCTAGGGCAAAACCCGACAGAAGCCGAGCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               201    -    251
UN17795        --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGTACCATTGACT  Raphanus raphanistrum subsp. maritimus
EV540614       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. landra
FD967228       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- CCAAGACATGATCAACGAAGTCGATGCCGACGGGAAC---GGCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGTACCATTGACT  Raphanus raphanistrum subsp. maritimus
EV536088       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. landra
FD970428       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> CCAAGACATGATCAACGAAGTCGATGCTGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> CCAAGACATGATCAACGAAGTCGATGCCGACGGGAACGGGACCATTGACT  Raphanus raphanistrum subsp. raphanistrum (MS)

               251    -    301
UN17795        --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. maritimus
EV540614       <-- TCCCTGAGTTTTTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- TCCCTGAGTTTTTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- TCCCTGAGTTTCTTAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. landra
FD967228       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. maritimus
EV536088       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> TCCCTGAGTTTCTTAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. landra
FD970428       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> TCCCTGAGTTTCTGAACCTGATGGCGAGGAAGATGAAGGACACTGACTCG  Raphanus raphanistrum subsp. raphanistrum (MS)

               301    -    351
UN17795        --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- GAGGAAGAGCTCAAGGAAGCCTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. maritimus
EV540614       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTTGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- GAGGAAGAGCTCAAGGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGG  Raphanus raphanistrum subsp. landra
FD967228       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> GAGGAAGAGCTCAAGGAAGCCTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. maritimus
EV536088       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTTGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> GAGGAAGAGCTCAAGGAAGCCTTCAGGGTTTTCGACAAAGACCAGAACGG  Raphanus raphanistrum subsp. landra
FD970428       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGACAAAGACCAGAATGG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> GAGGAAGAGCTCAAGGAAGCGTTCAGGGTTTTCGATAAAGACCAGAACGG  Raphanus raphanistrum subsp. raphanistrum (MS)

               351    -    401
UN17795        --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. maritimus
EV540614       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- TTTCATTTCTGCAGCTGAGTTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- TTTCATCTCTGCTGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. landra
FD967228       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- TTTCATCTCTGCA.....................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. maritimus
EV536088       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> TTTCATCTCTGCTGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. landra
FD970428       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGATGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> TTTCATCTCCGCAGCTGAGCTTCGACACGTGATGACTAACCTCGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> TTTCATCTCTGCAGCTGAGCTCCGACATGTGGTGACTAACCTTGGGGAGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN17795        --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- AGCTTACCGACGAGGATGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. maritimus
EV540614       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- AGTTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. landra
FD967228       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> AGCTTACCGACGAGGATGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. maritimus
EV536088       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> AGTTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. landra
FD970428       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> AGCTGACCGACGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> AGCTGACCGATGAGGAGGTTGATGAGATGATCCGTGAAGCTGATGTTGAT  Raphanus raphanistrum subsp. raphanistrum (MS)

               451    -    501
UN17795        --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- GGCGATGGTCAGATCAACTACGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. maritimus
EV540614       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- GGCGTTGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- GGCGATGGCCAGATCAACTACGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. landra
FD967228       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> GGCGATGGTCAGATCAACTACGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. maritimus
EV536088       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> GGCGTTGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> GGCGATGGCCAGATCAACTACGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. landra
FD970428       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTTATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> GGCGATGGTCAGATCAACTATGATGAGTTCGTCAAAGTCATGATGGCTAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               501    -    551
UN17795        --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- GTGAAGACGGAATCTTATTTATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. maritimus
EV540614       <-- GTGAAGACGGAATTTTATT-ATCCCTTTTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541375       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV541458       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAGCAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX760492       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAAACGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX761131       <-- GTGAAGACGGAATCTTATT-ATCCCTTTTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX767729       <-- GTGA-GACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537594       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD538266       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD553097       <-- GTGAAGACGGAATCCTATTTATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. landra
FD967228       <-- GTGAAGACGGAATCTTATT-ATCCCCTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY909301       <-- GCG-AGACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD537706       <-- GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV539653       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (MS)
FD975177       <-- GTGA-GACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD536580       --> GTGAAGACGGAATCTTATTTATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. maritimus
EV536088       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537064       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV537160       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAGCAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EV551094       --> GTGA-GACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX756748       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAAACGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX757580       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EX763674       --> GTGA-GACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EY907986       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY912982       --> GCG-AGACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
FD541276       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD541423       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD542127       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD556873       --> GTGAAGACGGAATCCTATTTATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. landra
FD970428       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD970992       --> GTGAAGACGGAATCTTATT-ATCCCCTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)
FD979051       --> GTGA-GACGGAATCTTATT-ATCCCTTCTGAAAGAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (NY)
EV538668       --> GTGAAGACGGAATCTTATT-ATCCCTTCTGAAACAAAAAA-CGATTTATG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN17795        --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- ATGTCTGTGACATCGTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV540614       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV541375       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV541458       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX760492       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX761131       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX767729       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD537594       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD538266       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD553097       <-- ATGTCTGTGACATCGTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD967228       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EY909301       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD537706       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV539653       <-- ..................................................
FD975177       <-- ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD536580       --> ATGTCTGTGACATCGTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV536088       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV537064       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV537160       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV551094       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX756748       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX757580       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EX763674       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EY907986       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EY912982       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD541276       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD541423       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD542127       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD556873       --> ATGTCTGTGACATCGTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD970428       --> ATGTCTG--ACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD970992       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
FD979051       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT
EV538668       --> ATGTCTGTGACAT-GTTTTCGCTTTCTGTTATTTGTCTTTTGCTTTTGGT

               601    -    651
UN17795        --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV540614       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACg..
EV541375       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV541458       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EX760492       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGAC...
EX761131       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EX767729       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTG.....
FD537594       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD538266       <-- TAGTGCTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD553097       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD967228       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EY909301       <-- TAGTGTTCTGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD537706       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV539653       <-- ..................................................
FD975177       <-- TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGAC...
FD536580       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV536088       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGA....
EV537064       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV537160       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EV551094       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EX756748       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGAC...
EX757580       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
EX763674       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAa
EY907986       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCA................
EY912982       --> TAGTGTTCTGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD541276       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD541423       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD542127       --> TAGTGCTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD556873       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD970428       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD970992       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAT
FD979051       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTTGACAAa
EV538668       --> TAGTGTTATGTGAAGTATGAACTCATGGTTTGCATTATCCTTTT......

               651    -    701
UN17795        --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCTGTTGTTACTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
FD532011       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTT...................
EV540614       <-- ..................................................
EV541375       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCc............
EV541458       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCT............
EX760492       <-- ..................................................
EX761131       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCT............
EX767729       <-- ..................................................
FD537594       <-- TTGATGTTCTCTCGTTTTTATT............................
FD538266       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCTGTTGTTACTCTC
FD553097       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCTGTTGT.......
FD967228       <-- TTGATGTTCTCTCGTTTTT...............................
EY909301       <-- TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATC...............
FD537706       <-- TTGATGTTCCCTCGTTTTTATTATTTGTTTTCATCTCTGTTGTT......
EV539653       <-- ..................................................
FD975177       <-- ..................................................
FD536580       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTaaaa...............
EV536088       --> ..................................................
EV537064       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCc............
EV537160       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCT............
EV551094       --> TTGATGCTCTCTCGTTTT................................
EX756748       --> ..................................................
EX757580       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCT..............
EX763674       --> aaa...............................................
EY907986       --> ..................................................
EY912982       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCaaaaaaaa.......
FD541276       --> TTGATGTTCTCTCGTTTTTATT............................
FD541423       --> TTGATGTTCCCTCGTTTTTATTATTTGTTTTCATCTCTGTTGTT......
FD542127       --> TTGATGTTCTCTCGTTT.................................
FD556873       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCTGTT.........
FD970428       --> TTGATGTTCTCTCGTTTTTATTATTTGTTTTCATCTCTGTTGTTACT...
FD970992       --> TTGATGTTCTCTCGTTTTT...............................
FD979051       --> aa................................................
EV538668       --> ..................................................