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Alignment for radish unigene UN17811

               1      -     51
UN17811        --> TTTTTTAAAATATTAATTCAACAAATATCGACATTCTCCTCTTGGTTTAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> TTTTTTAAAATATTAATTCAACAAATATCGACATTCTCCTCTTGGTTTAT
EX770440       --> .TTTTTAAAATATTAATTCAACAAATATCGACATTCTCCTCTTGGTTTAT
EY914245       --> ............ggAATTCAAAAAATATCGACATTCTCCTCTTGGTTTAT
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ...............................................agg
EV536822       --> ..................................................

               51     -    101
UN17811        --> TGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> TGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
EX770440       --> TGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
EY914245       --> TGATCGGGATCGGTCCGGATCTCAGACCCTTGTGAGGCTCTTCAA-TGGC
FY444725       --> TGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
EX895717       --> gGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
EY948048       --> gGATCGGGATCGGTCCGGATCTCAGACGCTTGTGAGGCTCTTCAAATGGC
EV536822       --> ..................................................

               101    -    151
UN17811        --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
EX770440       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
EY914245       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTG
FY444725       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
EX895717       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
EY948048       --> GCAGCTACTCTCCCCAGTTTGCACGGATCTTTTGAAGTTTCAGAGCTCTC
EV536822       --> ..................................................

               151    -    201
UN17811        --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACAAGCGGTGCTACCTCG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACAAGCGGTGCTACCTCG
EX770440       --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACTAGCGGTGCTACCTCG
EY914245       --> TTCTTAGCTCTAGATCGCGTTTCTCAGCCAAAACTAGCGGTGCTACCTCG
FY444725       --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACAAGCGGTGCTACCTCG
EX895717       --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACAAGCGGTGCTACCTCG
EY948048       --> TTCTCAGCTCTAGATCGCGTTTCTCAGCCAAAACAAGCGGTGCTACCTCG
EV536822       --> ..................................................

               201    -    251
UN17811        --> TCTTGGTGCTTACCTGCTTACACAGGAAGGAGACGAAGTGGCTCCATCGG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> TCTTG-TGCTTACCTGCTTACACAGGAAGGAGACGAAGTGGCTCCATCGG
EX770440       --> TCTTGGTGCTTACCTGCTTACACGGGAAGGAGACGAAGTGGCTCCATCGG
EY914245       --> TCTTGGTGCTTACCTGCTTACACCGGAAGGCGACGAAGTGGCTCCATCGG
FY444725       --> TCTTGGTGCTTACCTGCTTACACAGGAAGGAGACGAAGTGGCTCCATCGG
EX895717       --> TCTTGGTGCTTACCTGCTTACACAGGAAGGAGACGAAGTGGCTCCATCGG
EY948048       --> TCTTGGTGCTTACCTGCTTACACGGGAAGGAGACGAAGTGGCTCCATCGG
EV536822       --> ..................................................

               251    -    301
UN17811        --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ..................................................
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
EX770440       --> AAGATTGAGAGTTGCAACAGAGGACG........................
EY914245       --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
FY444725       --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
EX895717       --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
EY948048       --> AAGATTGAGAGTTGCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG
EV536822       --> .............GCAACAGAGGACGCTTCTTCTCTTTCCACCGGCGACG

               301    -    351
UN17811        --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCGGATGCTACACCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ................................................CA
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCGGATGCTACACCA
EX770440       --> ..................................................
EY914245       --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCAGATGCGACGCCA
FY444725       --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCGGATGCTACACCA
EX895717       --> TCGCCGATGGTTACTATGCCGTTCTCGGACTGCTTCCGGATGCTACACCA
EY948048       --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCGGATGCTACACCA
EV536822       --> TCGCCGATGATTACTATGCCGTTCTCGGACTGCTTCCGGATGCGACGCCA

               351    -    401
UN17811        --> GCGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- GAGGAGATTAAGAAAGCATACTATAACTGTATGAAGTCTTGCCATCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950290       --> GCGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> GAGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> GCGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA  Raphanus sativus cv GSK3-1
EX895717       --> GCGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA  Raphanus sativus cv Early Scarlet Globe
EY948048       --> GCGGAGATTAAGAAAGCATATTATAACTGTATGAAGTCTTGCCATCCTGA  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> GAGGAGATTAAGAAAGCATACTATAACTGTATGAAGTCTTGCCATCTTGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               401    -    451
UN17811        --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- CTTGAGTGGCAATGACC-TGAAACCACAAACTTCTGCATGT-CATTAACG
EY910327       <-- ..................................................
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
EX770440       --> ..................................................
EY914245       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
FY444725       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
EX895717       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
EY948048       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG
EV536822       --> CTTGAGTGGCAATGACCCTGAAACCACAAACTTCTGCATGTTCATTAACG

               451    -    501
UN17811        --> ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTACGATGAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTACGATGAG
EY910327       <-- ..............CTTAGTGACCCTGTACAGAGAATGGTTTACGATGAG
EX899754       <-- ..................................................
FD945801       <-- ..................................................
FD950290       --> ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTGTACGATGAG
EX770440       --> ..................................................
EY914245       --> ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTACGATGAG
FY444725       --> ATGTCTACGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTATGATGAG
EX895717       --> ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTGTACGATGGG
EY948048       --> ATGTCTACGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTATGATGAG
EV536822       --> ATGTCTATGAGATTCTTAGTGACCCTGTACAGAGAATGGTTTACGATGAG

               501    -    551
UN17811        --> ATTCATGGGTATGCAGTGACTGCTACCAATCCTTTTCTTGATGACTCTAG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ATTCATGGGTATGCAGTGACTGCTACCAATCCTTTTCTTGATGACTCTAG  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- ATTCATGGGTATGCAGTGACTGCCACCAATCCTTTTCTTGATGACTCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950290       --> ATCCATGGGTATACAGTGACTGCCACCAATCCTTTTCTTGATGACTCTAG  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> ATTCATGGGTATGCAGTGACTGCCACCAATCCTTTTCTTGATGACTCTAG  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> ATTCATGGATATGCAGTGACTGCTACCAATCCTTTTCTTGATGACTCTAG  Raphanus sativus cv GSK3-1
EX895717       --> ATCCATGGGTATACAGTGACTGCCACCAATCCTTTTCTTGATGACTCTAG  Raphanus sativus cv Early Scarlet Globe
EY948048       --> ATTCATGGATATGCAGTGACTGCTACCAATCCTTTTCTTGATGACTCTAG  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> ATTCATGGGTATGCAGTGACTGCTACCAATCCTTTTCTTGATGACTCTAG  Raphanus raphanistrum subsp. raphanistrum (MS)

               551    -    601
UN17811        --> CCCTAAGGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- CCCTAAGGATCACGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- CCCTAAGGATCATGTTTTTGTTGATGAGTTTGCATGTATAGGCTGCAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- ..............TTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950290       --> CCCTAAAGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> CCCTAAGGATCATGTTTTTGTTGATGAGTTTGCATGTATAGGCTGCAAAA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> CCCTAAGGATCACGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus sativus cv GSK3-1
EX895717       --> CCCTAAAGATCATGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus sativus cv Early Scarlet Globe
EY948048       --> CCCTAAGGATCACGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> CCCTAAGGATCACGTTTTTGTTGATGAGTTTGCTTGTATAGGCTGCAAAA  Raphanus raphanistrum subsp. raphanistrum (MS)

               601    -    651
UN17811        --> ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGGAGGACTTTGGA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGGAGGACTTTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- ACTGTGCCAATGTGGCTCCAGATATATTTGAGATTGAGGAGGACTTTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGGAGGACTTTGGA  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- ..................................................  Raphanus sativus cv Early Scarlet Globe
FD950290       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGagga........  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAGATTGAGGAGGACTTTGGA  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAGATTGAGGAAGACTTTGGA  Raphanus sativus cv GSK3-1
EX895717       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGGAGGACTTTGGA  Raphanus sativus cv Early Scarlet Globe
EY948048       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAGATTGAGGAAGACTTTGGA  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> ACTGTGCCAATGTGGCTCCAGATATATTTGAAATTGAGGAGGACTTTGGA  Raphanus raphanistrum subsp. raphanistrum (MS)

               651    -    701
UN17811        --> AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTGATTCAGCAAGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTACTTCAACAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTACTTCAACAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- GGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTGATTCAGCAAGC  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- ...............AACCAGCGTGGCAACCCCGATTTGATTCAGCAAGC  Raphanus sativus cv Early Scarlet Globe
FD950290       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTACTTCAACAAGC  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTGCTTCAGCAAGC  Raphanus sativus cv GSK3-1
EX895717       --> GGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTGAT-CAGCAAGC  Raphanus sativus cv Early Scarlet Globe
EY948048       --> AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTGCTTCAGCAAGC  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> AGAGCAAGGGCTTGTAACCAGCGTGGCAACCCTGATTTACTTCAACAAGC  Raphanus raphanistrum subsp. raphanistrum (MS)

               701    -    751
UN17811        --> AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- AGTTGAAACATGCCCGGTTGATTGTATCCATCAGACTTCTGCGGCACAGT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGC  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGC  Raphanus sativus cv Early Scarlet Globe
FD950290       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> AGTTGAA-CATGCCCGGTTGATTGTATCCATCAGACTTCTGCGGC.....  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> AGTTGAAACATGCCCGGTTGATTGTATATATCAGACTTCTGCGGCACAGT  Raphanus sativus cv GSK3-1
EX895717       --> AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGC  Raphanus sativus cv Early Scarlet Globe
EY948048       --> AGTTGAAACATGC.....................................  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> AGTTGAAACATGCCCGGTTGATTGTATCTATCAGACTTCTGCGGCACAGT  Raphanus raphanistrum subsp. raphanistrum (MS)

               751    -    801
UN17811        --> TGTCTTTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTTAATGTTGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- TGTCTTTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTGAATGTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)
EY910327       <-- TGTCTTTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTTAATGTTGCT  Raphanus raphanistrum subsp. raphanistrum (NY)
EX899754       <-- TGTCATTGCTTTAAGATGAAATGCGTAGGGTTGAAAGAGTTAATGTTGCT  Raphanus sativus cv Early Scarlet Globe
FD945801       <-- TGTCATTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTTAATGTTGCT  Raphanus sativus cv Early Scarlet Globe
FD950290       --> ..................................................  Raphanus sativus cv Early Scarlet Globe
EX770440       --> ..................................................  Raphanus raphanistrum subsp. landra
EY914245       --> ..................................................  Raphanus raphanistrum subsp. raphanistrum (NY)
FY444725       --> TGTCTTTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTAAATGTTGCT  Raphanus sativus cv GSK3-1
EX895717       --> TGTCATTGCTT-TAGATGAA-TGCGTAGG-TTGAAAGAGTTA-TG-TGCT  Raphanus sativus cv Early Scarlet Globe
EY948048       --> ..................................................  Raphanus sativus cv Rat-Tail Radish #3870
EV536822       --> TGTCTTTGCTTGAAGATGAAATGCGTAGGGTTGAAAGAGTGAATGTTGCT  Raphanus raphanistrum subsp. raphanistrum (MS)

               801    -    851
UN17811        --> CTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- CTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC
EY910327       <-- CTGATGCTTTCTGGAATGGGGTCAGGAGCAGTTGATGTTTTCAGAATGGC
EX899754       <-- CTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC
FD945801       <-- TTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> CTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC
EX895717       --> CTGA..............................................
EY948048       --> ..................................................
EV536822       --> CTGATGCTTTCTGGAATGGGGTCAGGAGCCGTTGATGTTTTCAGAATGGC

               851    -    901
UN17811        --> GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTTTTGAATCAAGCTAGAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTCTTGAATCAAGCTAGAA
EY910327       <-- GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTTTTGAATCAAGCTAGAA
EX899754       <-- GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTTTTGAATCGAGCTAGAA
FD945801       <-- GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTTTTGAATCAAGCTAGAA
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> GAGATCTCGATGGGGAAAAAGGCAAGCAAAAGTTTTGAATCAAGC.....
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> GAGATCTCGATGGGAAAAAAGGCAAGCAAAAGTCTTGAATCAAGCTAGAA

               901    -    951
UN17811        --> GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT
EY910327       <-- GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT
EX899754       <-- GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT
FD945801       <-- GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> GTAGAATGATGAAGCGGAAAAGCACAGATGAAACACCTTCCTATTGGGAT

               951    -   1001
UN17811        --> AACCTCTGGGGCAAAGATAATCAATACCAGAAAAGCGAGGAAGAAGTACA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- AACCTCTGGGGCCAAGACAATCAATACCAGAAAAGCGAGGAAGAAGTACA
EY910327       <-- AACCTCTGGGGCAAAGATAATCAATACCAGAAAAGCGAGGAAGAAGTACA
EX899754       <-- AACCTCTGGGGCAAAGATAATCAATACCAGAAAAGCGAGGAAGAAGTACA
FD945801       <-- AACCTTTGGGGCAAAGATAATCAATACCAGAAAAGCGAGGAAGAAGTACA
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> AACCTCTGGGGCCAAGACAATCAATACCAGAAAAGCGAGGAAGAAGTACA

               1001   -   1051
UN17811        --> AGAACGAGCTCAACGAGCCGCAGCAGCAGCCAGAAGATGGAGGGAGTACT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- AGAACGAGCTCAACGAGCCGCTGCAGCAGCCAGAAGATGGAGGGAGTACT
EY910327       <-- AGAACGAGCTCAACGAGCCGCAGCAGCAGCCAGAAGATGGAGGGAGTACT
EX899754       <-- AGAACGAGCTCAACGAGCCGCAGCAGCAGCCAGAAGATGGAGGGAGTACT
FD945801       <-- AGAACGAGCTCAACGAGCCGCAGCAGCAGCCAGAAGATGGAGGGAGTACT
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> AGAACGAGCTCAACGAGCCGCTGCAGCAGCCAGAAGATGG..........

               1051   -   1101
UN17811        --> CACGAAGAGGCGTGGATAAACGCCCCACGTTCAAACTCCCTGACTCCTCA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- CACGAAGAGGCGTGGATAAGCGCCCCACGTTCAAACTCCCTGACTCCTCA
EY910327       <-- CACGAAGAGGCGTGGATAAACGCCCCACGTTCAAACTCCCTGACTCCTCA
EX899754       <-- CACGAAGAGGCGTGGATAAACGCCCCACGTTCAAACCCCCCGACTCCTCA
FD945801       <-- CACGAAGAGGCGTGGATAAACGCCCCACGTTCAAACTCCCCGACTCCTCA
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> ..................................................

               1101   -   1151
UN17811        --> TCCTCCAGAGGAGACAACTGAAA-CCACCCTCCAGACATGAATCTTAATG
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- TCCTCCAGAGGAAACAACTGAAAACCACCCTCCAGACATGAATCTTAATG
EY910327       <-- TCCTCCAGAGGAGACAACTGAAA-CCACCCTCCAGACATGAATCTTAATG
EX899754       <-- TCCTCCAGAGGAGACAACTGAAA-CCACCCTCCAGACATGAATCTTAATG
FD945801       <-- TCCTCCAGAGGAGACAACTGAAA-CCACCCTCCAGACATGAATCTTAATG
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> ..................................................

               1151   -   1201
UN17811        --> GTAGTAAAGTATATATGTAATAACTTCACCGTTCCTAGACTTGTATAGCT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- GTAGTAAAGTATATATGTAATAACTTCACCGTTCCTAGACTTGTATAGCT
EY910327       <-- GTAGTAAAGTATATATGTAATAACTTCACCGTTCCTAGACTTGTATAGCT
EX899754       <-- GTAGTAAAGTATATATGTAATAACTTCACCGTTCCTAGACTTGTATAGCT
FD945801       <-- GTAGTAAAGTATATATGTAATAACTTCACCGTTCCTAGACTTGTATAGCT
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> ..................................................

               1201   -   1251
UN17811        --> TTCTTCCCATATCGATTTGTGGAAGAATAAAAAC-AAGTGTATTAAACGT
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- CTCTTCCCATATCGATTTGTGGAAGAATAAAAACTAAGTGTATTAAACGT
EY910327       <-- CTCTTCCCATATCGATTTGTGGAAGAATAAAAAC-AAGTGTATTAAACGT
EX899754       <-- TTCTTCCCATATCGATTCGTGGAAGAATAAAAAC-AAGTGTAT-AAACGT
FD945801       <-- TTCTTCCCATATCGATTCGTGGAAGAATAAAAAC-AAGTGTAT-AAACGT
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> ..................................................

               1251   -   1301
UN17811        --> TTTCATTTTCATGTATTATATACTCTTTATGTATATAAGTCTCTCTCCAA
                   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
EV541184       <-- TTTCATTTTCATGTATGATATACTCTT-ATGTATATAAGTCTCTCTCCAA
EY910327       <-- TTTCATTTTCATGTATGATATACTCTTatgt...................
EX899754       <-- TTTCATTTTCATGTATTATATACTCTTTATGTATATAAGTCTCTCTCCAA
FD945801       <-- TTTCATTTTCATGTATTATATACTCTTTATGTAT................
FD950290       --> ..................................................
EX770440       --> ..................................................
EY914245       --> ..................................................
FY444725       --> ..................................................
EX895717       --> ..................................................
EY948048       --> ..................................................
EV536822       --> ..................................................

               1301   -   1351
UN17811        --> GGCCTAGAT
                   ~~~~~~~~~
EV541184       <-- GGt......
EY910327       <-- .........
EX899754       <-- GGCCTAGAT
FD945801       <-- .........
FD950290       --> .........
EX770440       --> .........
EY914245       --> .........
FY444725       --> .........
EX895717       --> .........
EY948048       --> .........
EV536822       --> .........